Gcaud208.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud208.t1
Unique Name	Gcaud208.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3709_length_3047_cov_5.367050	contig	NODE_3709_length_3047_cov_5.367050:808..2031 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LIQ8
PFAMs	Band_7,Band_7_C
Max annot lvl	2759\|Eukaryota
Evalue	9.96e-73
EggNOG OGs	COG0330@1\|root,KOG2620@2759\|Eukaryota
Description	stress-induced mitochondrial fusion
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud208	Gcaud208	Gracilaria caudata M_176_S67 male	gene	NODE_3709_length_3047_cov_5.367050 808..2031 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud208.t1.start1	Gcaud208.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3709_length_3047_cov_5.367050 808..810 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud208.t1.CDS1	Gcaud208.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3709_length_3047_cov_5.367050 808..2031 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud208.t1.exon1	Gcaud208.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3709_length_3047_cov_5.367050 808..2031 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud208.t1.stop1	Gcaud208.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3709_length_3047_cov_5.367050 2029..2031 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud208.t1	Gcaud208.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3709_length_3047_cov_5.367050 808..2031 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3709_length_3047_cov_5.367050:808..2031+
coding sequence from alignment at NODE_3709_length_3047_cov_5.367050:808..2031+

mRNA sequence

>Gcaud208.t1 ID=Gcaud208.t1|Name=Gcaud208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp
MGCVSRLLFPDLAPSVPIGKFLFSLIPTDIFNSPLDNIMQRLLSSSLSVA
VRNLRISPSPRSPVFQAVQCIPPHRLFHTSERRLASSEKQQEYTLETDTP
SNKWPVSHFNTLLNICPEGQKMVVERLGSVHNVYSPGWFISIPVVDRIAY
CVDMREQTVYYPPQNAVTKDNVTVRVDAVIFVKFVDALKAAYGATDPLRS
VQELAKSAMRAAVGELELDALFHSRKYVNERVSDAVTAAASNWGLIITRH
EILDVKPDKHILEVMDKQAAAERMRREKVLEAEGEKQSATLKSEGVRIRL
VNESEGHLTRVKNEATAEQSRLRLEAEGRAKAITAEAEARSAALKMVSKA
FQEEGAIEAARLLVAREYVSMYGEMGKTSNTIMINDKPADVGALLAQVTM
ALQKHES*

spliced messenger RNA

>Gcaud208.t1 ID=Gcaud208.t1|Name=Gcaud208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at NODE_3709_length_3047_cov_5.367050:808..2031+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATGTGTTTCACGTCTGCTCTTCCCAGACCTTGCTCCATCCGTGCC
GATCGGGAAATTCCTCTTCTCTCTCATCCCTACCGATATCTTCAACTCTC
CGCTTGATAACATTATGCAGCGACTACTTTCTTCGTCCCTCAGCGTAGCC
GTTCGAAACCTACGTATCTCTCCGTCGCCGCGATCTCCTGTGTTCCAAGC
CGTGCAATGCATCCCTCCACATCGACTGTTTCACACCTCTGAAAGACGCC
TCGCATCATCCGAAAAGCAGCAAGAGTACACACTCGAAACCGATACACCC
TCGAACAAATGGCCAGTCTCTCACTTCAATACGCTTCTCAACATCTGTCC
GGAAGGACAGAAAATGGTTGTCGAACGTCTAGGATCCGTTCACAACGTGT
ATTCACCCGGATGGTTCATTTCGATTCCCGTCGTTGATCGCATAGCGTAC
TGCGTGGACATGAGGGAACAAACCGTCTACTATCCTCCGCAAAACGCCGT
CACAAAGGATAACGTTACTGTACGCGTTGATGCTGTGATCTTTGTGAAAT
TCGTCGATGCACTCAAGGCAGCTTACGGAGCAACCGATCCTTTGAGATCG
GTGCAGGAACTTGCAAAGTCTGCAATGAGAGCGGCTGTAGGAGAATTGGA
GCTGGATGCGTTGTTTCATTCGAGGAAGTACGTGAACGAACGTGTAAGCG
ATGCGGTGACGGCGGCTGCTTCCAATTGGGGTCTTATCATAACTCGACAT
GAGATCCTCGACGTCAAGCCGGACAAACATATTCTGGAAGTAATGGATAA
ACAAGCAGCAGCCGAACGCATGAGAAGAGAGAAGGTATTGGAAGCCGAAG
GAGAGAAGCAATCGGCCACGTTGAAGTCGGAAGGAGTGCGTATCCGATTG
GTGAACGAGTCGGAAGGGCACTTGACGAGAGTTAAGAATGAAGCCACGGC
AGAGCAGAGTCGGCTGAGATTGGAGGCGGAAGGAAGGGCGAAGGCGATCA
CGGCTGAGGCTGAGGCGAGGAGTGCGGCTCTGAAGATGGTTTCCAAAGCG
TTTCAGGAGGAAGGTGCCATTGAAGCAGCTCGTCTGTTGGTTGCAAGGGA
ATATGTGTCCATGTATGGAGAGATGGGCAAGACAAGCAATACTATTATGA
TTAATGATAAGCCAGCAGACGTGGGAGCGCTGCTGGCTCAAGTAACGATG
GCGCTTCAGAAGCACGAGAGCTAG

protein sequence of Gcaud208.t1

>Gcaud208.t1 ID=Gcaud208.t1|Name=Gcaud208.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=408bp
MGCVSRLLFPDLAPSVPIGKFLFSLIPTDIFNSPLDNIMQRLLSSSLSVA
VRNLRISPSPRSPVFQAVQCIPPHRLFHTSERRLASSEKQQEYTLETDTP
SNKWPVSHFNTLLNICPEGQKMVVERLGSVHNVYSPGWFISIPVVDRIAY
CVDMREQTVYYPPQNAVTKDNVTVRVDAVIFVKFVDALKAAYGATDPLRS
VQELAKSAMRAAVGELELDALFHSRKYVNERVSDAVTAAASNWGLIITRH
EILDVKPDKHILEVMDKQAAAERMRREKVLEAEGEKQSATLKSEGVRIRL
VNESEGHLTRVKNEATAEQSRLRLEAEGRAKAITAEAEARSAALKMVSKA
FQEEGAIEAARLLVAREYVSMYGEMGKTSNTIMINDKPADVGALLAQVTM
ALQKHES*

mRNA from alignment at NODE_3709_length_3047_cov_5.367050:808..2031+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud208.t1 ID=Gcaud208.t1|Name=Gcaud208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at NODE_3709_length_3047_cov_5.367050:808..2031+ (Gracilaria caudata M_176_S67 male)
ATGGGATGTGTTTCACGTCTGCTCTTCCCAGACCTTGCTCCATCCGTGCC
GATCGGGAAATTCCTCTTCTCTCTCATCCCTACCGATATCTTCAACTCTC
CGCTTGATAACATTATGCAGCGACTACTTTCTTCGTCCCTCAGCGTAGCC
GTTCGAAACCTACGTATCTCTCCGTCGCCGCGATCTCCTGTGTTCCAAGC
CGTGCAATGCATCCCTCCACATCGACTGTTTCACACCTCTGAAAGACGCC
TCGCATCATCCGAAAAGCAGCAAGAGTACACACTCGAAACCGATACACCC
TCGAACAAATGGCCAGTCTCTCACTTCAATACGCTTCTCAACATCTGTCC
GGAAGGACAGAAAATGGTTGTCGAACGTCTAGGATCCGTTCACAACGTGT
ATTCACCCGGATGGTTCATTTCGATTCCCGTCGTTGATCGCATAGCGTAC
TGCGTGGACATGAGGGAACAAACCGTCTACTATCCTCCGCAAAACGCCGT
CACAAAGGATAACGTTACTGTACGCGTTGATGCTGTGATCTTTGTGAAAT
TCGTCGATGCACTCAAGGCAGCTTACGGAGCAACCGATCCTTTGAGATCG
GTGCAGGAACTTGCAAAGTCTGCAATGAGAGCGGCTGTAGGAGAATTGGA
GCTGGATGCGTTGTTTCATTCGAGGAAGTACGTGAACGAACGTGTAAGCG
ATGCGGTGACGGCGGCTGCTTCCAATTGGGGTCTTATCATAACTCGACAT
GAGATCCTCGACGTCAAGCCGGACAAACATATTCTGGAAGTAATGGATAA
ACAAGCAGCAGCCGAACGCATGAGAAGAGAGAAGGTATTGGAAGCCGAAG
GAGAGAAGCAATCGGCCACGTTGAAGTCGGAAGGAGTGCGTATCCGATTG
GTGAACGAGTCGGAAGGGCACTTGACGAGAGTTAAGAATGAAGCCACGGC
AGAGCAGAGTCGGCTGAGATTGGAGGCGGAAGGAAGGGCGAAGGCGATCA
CGGCTGAGGCTGAGGCGAGGAGTGCGGCTCTGAAGATGGTTTCCAAAGCG
TTTCAGGAGGAAGGTGCCATTGAAGCAGCTCGTCTGTTGGTTGCAAGGGA
ATATGTGTCCATGTATGGAGAGATGGGCAAGACAAGCAATACTATTATGA
TTAATGATAAGCCAGCAGACGTGGGAGCGCTGCTGGCTCAAGTAACGATG
GCGCTTCAGAAGCACGAGAGCTAG

Coding sequence (CDS) from alignment at NODE_3709_length_3047_cov_5.367050:808..2031+

>Gcaud208.t1 ID=Gcaud208.t1|Name=Gcaud208.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1224bp|location=Sequence derived from alignment at NODE_3709_length_3047_cov_5.367050:808..2031+ (Gracilaria caudata M_176_S67 male)
ATGGGATGTGTTTCACGTCTGCTCTTCCCAGACCTTGCTCCATCCGTGCC
GATCGGGAAATTCCTCTTCTCTCTCATCCCTACCGATATCTTCAACTCTC
CGCTTGATAACATTATGCAGCGACTACTTTCTTCGTCCCTCAGCGTAGCC
GTTCGAAACCTACGTATCTCTCCGTCGCCGCGATCTCCTGTGTTCCAAGC
CGTGCAATGCATCCCTCCACATCGACTGTTTCACACCTCTGAAAGACGCC
TCGCATCATCCGAAAAGCAGCAAGAGTACACACTCGAAACCGATACACCC
TCGAACAAATGGCCAGTCTCTCACTTCAATACGCTTCTCAACATCTGTCC
GGAAGGACAGAAAATGGTTGTCGAACGTCTAGGATCCGTTCACAACGTGT
ATTCACCCGGATGGTTCATTTCGATTCCCGTCGTTGATCGCATAGCGTAC
TGCGTGGACATGAGGGAACAAACCGTCTACTATCCTCCGCAAAACGCCGT
CACAAAGGATAACGTTACTGTACGCGTTGATGCTGTGATCTTTGTGAAAT
TCGTCGATGCACTCAAGGCAGCTTACGGAGCAACCGATCCTTTGAGATCG
GTGCAGGAACTTGCAAAGTCTGCAATGAGAGCGGCTGTAGGAGAATTGGA
GCTGGATGCGTTGTTTCATTCGAGGAAGTACGTGAACGAACGTGTAAGCG
ATGCGGTGACGGCGGCTGCTTCCAATTGGGGTCTTATCATAACTCGACAT
GAGATCCTCGACGTCAAGCCGGACAAACATATTCTGGAAGTAATGGATAA
ACAAGCAGCAGCCGAACGCATGAGAAGAGAGAAGGTATTGGAAGCCGAAG
GAGAGAAGCAATCGGCCACGTTGAAGTCGGAAGGAGTGCGTATCCGATTG
GTGAACGAGTCGGAAGGGCACTTGACGAGAGTTAAGAATGAAGCCACGGC
AGAGCAGAGTCGGCTGAGATTGGAGGCGGAAGGAAGGGCGAAGGCGATCA
CGGCTGAGGCTGAGGCGAGGAGTGCGGCTCTGAAGATGGTTTCCAAAGCG
TTTCAGGAGGAAGGTGCCATTGAAGCAGCTCGTCTGTTGGTTGCAAGGGA
ATATGTGTCCATGTATGGAGAGATGGGCAAGACAAGCAATACTATTATGA
TTAATGATAAGCCAGCAGACGTGGGAGCGCTGCTGGCTCAAGTAACGATG
GCGCTTCAGAAGCACGAGAGCTAG