Gcaud9975.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9975.t1
Unique NameGcaud9975.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length609
Homology
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A2V3ITB9_9FLOR (Myocyte-specific enhancer factor 2D-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITB9_9FLOR)

HSP 1 Score: 258 bits (658), Expect = 7.010e-74
Identity = 223/633 (35.23%), Postives = 280/633 (44.23%), Query Frame = 0
Query:    7 NTQPTSSRPPAPQKRGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFEEDLDPLSVAKRRKLSSGETPTFEVPTNGVQIHQIVNEAVSAPVAPIPSVVNTTYNMNAPSPIHAVPLTQTVQVPHPLPIVPAQDPSRSYGPGLMPSHQSTYNSYGXXXXXXXXXXXXXXXXQLQSSSKGNDRSPGVIHHNQHPTDNEIY------QDAGMPVPVGSLAPIPTSTYPEAIQYGYQRQVEEPPAGAIPPQATSTQMKQHTPYAETQ----HYVDKQQKPVTEGEEIRTEVRDRPVRSPSPVDGRKHREEPAPIKAPVTDAGKADVSH-----SEAVTEPPQKKHAVQQNGAPHG-------SVILKPSHESPTEARMANKENEGTENLSLP-----------------------RIEVRSDSMPPTSLESALHTTTRASPP--------------PIPNISDTIGGIPRLQIPQTPHGQSTWPALNSLPSNDGGNSVSLTRFFGLDSSSARRRNRNPFAMPQD---GIIPLTPRXXXXXXXXSARSL 577
            N  P+SS PP    R KI+I+RI DNR+RQVTFLKRKNGLLKKAMELGILCDCEIAVIVYN HNGKLFEYSSI M++VLNRYATYSGP ERRK + FFD+ A++ +SNIPVNEP+VA AA+NA++ ASRRPRPTYKF+E   P      RKLSSGETP   V T   Q H +  +  +  V        T Y       I+  P   T    + LP +    P  S         QS  N                   QLQ        +P   +++    +N  +      +D  + +P GS    P ST          +Q   P    I P  +S       P  ++Q     Y         + +  R    D  + S      ++HR E A                     +   T+  Q +H    +    G       S+   P+H        +  E      L LP                       R  + S S P    E    T   AS                 +P IS  +  +P L    TPHGQ+TWP  NSLPS DG N++ LT FF +DS S R R+ NPFAM      G +PLTPR        S RSL
Sbjct:    7 NYHPSSSIPPTQDGRRKIRIQRIQDNRSRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNVHNGKLFEYSSIDMDKVLNRYATYSGPSERRKKDSFFDLQAAKGYSNIPVNEPNVANAARNAALAASRRPRPTYKFQE---PDDKPHGRKLSSGETPVVMVHTPHTQPHALQEQHAAKKV-------KTNYGQ-----INIAPKPCTPAFANHLPTLHPATPVES-----AIHQQSAVND-----------ARRVYISQLQQIPLATP-APSFTNYDPIQANNNPFSQHCARKDNALRIPPGSNWQTPRST---------GQQHFRPSETPIHPHYSSHMNAYANPNNQSQAQAGDYSSHASASQIQSDWSRAHRNDTYLSSTPTTTNQQHRSEKAXXXXXXXXXXXXXXXXXXXXFAHETTDIQQDRHINDNSANSRGFHQPTEPSLAPNPAHNLVASHNDSGIETGAKAKLGLPHRDLGEQTNQEYRADCGRREDGIRALLNSSSSPHAESECREGTAQHASAAGAAGQLQSENGQQSAMPTISQALRTVPPLHFATTPHGQATWP--NSLPSADGENAIPLTPFFNMDSFSTRGRSVNPFAMSSSKNMGFLPLTPRFFGMDPMQSTRSL 596          
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A2V3J9R8_9FLOR (Myocyte-specific enhancer factor 2D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9R8_9FLOR)

HSP 1 Score: 216 bits (550), Expect = 2.010e-58
Identity = 112/179 (62.57%), Postives = 135/179 (75.42%), Query Frame = 0
Query:    1 MSSNINNTQPTSSRPPAPQKRGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFEEDLDPLSVAKRRKLSSGET---PTFEVPTNGVQIH 176
            M+ N  N  P SS P A   R KI+I+RI DNR+RQ TFLKRKNGL KKAMELG+LCDCEI VIVYN HNGKLFEYSS+ M++VLNRYA+YSGP ERRK E FFD++A++ +SNIP NEP+VA AA+NA++ ASRRPRP+YKFEE+ +       RKLS GET   P  +   N +Q H
Sbjct:    1 MNHNDENQTPNSSTPVA---RRKIKIQRIEDNRSRQATFLKRKNGLFKKAMELGVLCDCEIGVIVYNVHNGKLFEYSSVDMDQVLNRYASYSGPSERRKRENFFDLSAAKGYSNIPQNEPNVAQAARNAALAASRRPRPSYKFEEETNAQPQGSNRKLSYGETSVAPMADFEANPIQGH 176          
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A2V3J2L1_9FLOR (Myocyte-specific enhancer factor 2D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2L1_9FLOR)

HSP 1 Score: 138 bits (348), Expect = 3.540e-32
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 0
Query:   26 IRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFE 144
            I  I +   ++VTF KRK+GLLKKA ELG+LCDCEI VI++NP +G LFEY S+ ME +L RYA+Y GP  R + E F D +A++  SNIPV EP +A  A+NA++ AS RPRP  KF+
Sbjct:   26 IEPIQNRNKQRVTFSKRKDGLLKKAYELGVLCDCEIGVIIFNPLSGNLFEYCSVQMENLLQRYASYKGPSMRMEKETFCDRSAAKGVSNIPVEEPELAQKARNAAIAASHRPRPILKFQ 144          
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A6T6BQ46_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6BQ46_9RHOD)

HSP 1 Score: 120 bits (301), Expect = 2.490e-25
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 0
Query:   21 RGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNA 129
            R KI+I RI D R RQVTF KRKNGLLKKAMEL +LCDC+I V+++N  +GKL+EY+S  +  +L RYATYSGP+E R+TE F      ++H N+P + P++A A Q A
Sbjct:    9 RKKIKIARIEDERNRQVTFTKRKNGLLKKAMELAVLCDCDIGVVIFNS-SGKLYEYTSGDLAGLLARYATYSGPVEHRETEMFHRPTV-QSHVNVPKDRPALAEAVQCA 115          
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A1X6PC13_PORUM (MADS-box domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC13_PORUM)

HSP 1 Score: 120 bits (302), Expect = 7.440e-25
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 0
Query:   21 RGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRR 136
            R KI IR I D R RQVTF KRKNGLLKKAMEL +LC C+I+V+V+N    KLFEY +  M++V  RYA YSGP ERR  + F + AA++   N+P N  ++  AA  A + ASRR
Sbjct:   59 RKKILIRHIPDERNRQVTFTKRKNGLLKKAMELSVLCGCDISVVVFNG-KSKLFEYCNTDMDKVFLRYANYSGPAERRNLKNFHNPAAAKVAINVPKNHAALRDAALAAGVAASRR 173          
BLAST of Gcaud9975.t1 vs. uniprot
Match: UPI0005239FBF (myocyte-specific enhancer factor 2D homolog n=1 Tax=Nestor notabilis TaxID=176057 RepID=UPI0005239FBF)

HSP 1 Score: 103 bits (258), Expect = 2.270e-22
Identity = 58/149 (38.93%), Postives = 82/149 (55.03%), Query Frame = 0
Query:   21 RGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFEEDLDPLSVAKRRKLSSGETPTFEVP 169
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    +  +     EP       +      + P    K+ +  + L +  +R  SS   P F +P
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEP-------DGDDSIDQSPLMEDKYRKGSEDLDILFKRYGSSVPAPNFAMP 143          
BLAST of Gcaud9975.t1 vs. uniprot
Match: UPI00077D44FC (myocyte-specific enhancer factor 2A-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D44FC)

HSP 1 Score: 105 bits (262), Expect = 4.290e-22
Identity = 59/149 (39.60%), Postives = 84/149 (56.38%), Query Frame = 0
Query:   21 RGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFEEDLDPLSVAKRRKLSSGETPTFEVP 169
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    + H +    +P      +    +  R      K +E+ D + +   R  S+   PTF +P
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEALNKKEHRDSESPDP------EEPFSLTPRTEEKYKKIDEEFDKM-MQNYRLSSTVPQPTFSMP 143          
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A6P6R266_CARAU (myocyte-specific enhancer factor 2D-like isoform X1 n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6R266_CARAU)

HSP 1 Score: 105 bits (262), Expect = 4.820e-22
Identity = 59/149 (39.60%), Postives = 84/149 (56.38%), Query Frame = 0
Query:   21 RGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFEEDLDPLSVAKRRKLSSGETPTFEVP 169
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    + H +    +P      +    +  R      K +E+ D +  + R   S+   PTF +P
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEALNKKEHRDSESPDP------EEPFSLTPRTEEKYKKIDEEFDKMMQSYRLS-STVPPPTFSMP 143          
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A671RLP5_9TELE (Myocyte-specific enhancer factor 2D-like n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A671RLP5_9TELE)

HSP 1 Score: 102 bits (254), Expect = 5.350e-22
Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 0
Query:   21 RGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFEEDLDPLSVAKRRKLSSGE 162
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    +  +     EP       + S+  S      Y+  E+LD L   KR  +S GE
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCNSPEPD-----GDDSIDQSPLQEDKYRNSEELDILF--KRYGVSVGE 136          
BLAST of Gcaud9975.t1 vs. uniprot
Match: A0A4W4G0I4_ELEEL (MADS-box domain-containing protein n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4G0I4_ELEEL)

HSP 1 Score: 101 bits (252), Expect = 6.900e-22
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 0
Query:   21 RGKIQIRRIADNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKTEQFFDVAAS------RAHSNIPV 117
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +V  S       AHS  P+
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEVTPSATTPPTHAHSRRPL 104          
The following BLAST results are available for this feature:
BLAST of Gcaud9975.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITB9_9FLOR7.010e-7435.23Myocyte-specific enhancer factor 2D-like n=1 Tax=G... [more]
A0A2V3J9R8_9FLOR2.010e-5862.57Myocyte-specific enhancer factor 2D n=1 Tax=Gracil... [more]
A0A2V3J2L1_9FLOR3.540e-3255.46Myocyte-specific enhancer factor 2D n=1 Tax=Gracil... [more]
A0A6T6BQ46_9RHOD2.490e-2555.96Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6PC13_PORUM7.440e-2554.31MADS-box domain-containing protein n=1 Tax=Porphyr... [more]
UPI0005239FBF2.270e-2238.93myocyte-specific enhancer factor 2D homolog n=1 Ta... [more]
UPI00077D44FC4.290e-2239.60myocyte-specific enhancer factor 2A-like n=1 Tax=N... [more]
A0A6P6R266_CARAU4.820e-2239.60myocyte-specific enhancer factor 2D-like isoform X... [more]
A0A671RLP5_9TELE5.350e-2242.96Myocyte-specific enhancer factor 2D-like n=4 Tax=C... [more]
A0A4W4G0I4_ELEEL6.900e-2251.46MADS-box domain-containing protein n=1 Tax=Electro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 21..41
score: 56.92
coord: 41..56
score: 68.95
coord: 56..77
score: 31.41
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 19..79
e-value: 5.2E-26
score: 102.4
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 28..76
e-value: 1.1E-21
score: 76.1
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 19..80
score: 23.114019
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 31..113
e-value: 1.8E-25
score: 90.8
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 21..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 564..608
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 506..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 357..395
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..490
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 586..608
NoneNo IPR availablePANTHERPTHR48019:SF90MYOCYTE-SPECIFIC ENHANCER FACTOR 2Ccoord: 21..100
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 21..100
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 21..93
e-value: 2.18846E-33
score: 120.35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_502_length_23533_cov_4.649518contigNODE_502_length_23533_cov_4.649518:21282..23390 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9975.t1Gcaud9975.t1Gracilaria caudata M_176_S67 malemRNANODE_502_length_23533_cov_4.649518 21282..23390 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9975.t1 ID=Gcaud9975.t1|Name=Gcaud9975.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=609bp
MSSNINNTQPTSSRPPAPQKRGKIQIRRIADNRTRQVTFLKRKNGLLKKA
MELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPIERRKT
EQFFDVAASRAHSNIPVNEPSVAMAAQNASMVASRRPRPTYKFEEDLDPL
SVAKRRKLSSGETPTFEVPTNGVQIHQIVNEAVSAPVAPIPSVVNTTYNM
NAPSPIHAVPLTQTVQVPHPLPIVPAQDPSRSYGPGLMPSHQSTYNSYGI
VPSTQPTYSTTYAIPQLQSSSKGNDRSPGVIHHNQHPTDNEIYQDAGMPV
PVGSLAPIPTSTYPEAIQYGYQRQVEEPPAGAIPPQATSTQMKQHTPYAE
TQHYVDKQQKPVTEGEEIRTEVRDRPVRSPSPVDGRKHREEPAPIKAPVT
DAGKADVSHSEAVTEPPQKKHAVQQNGAPHGSVILKPSHESPTEARMANK
ENEGTENLSLPRIEVRSDSMPPTSLESALHTTTRASPPPIPNISDTIGGI
PRLQIPQTPHGQSTWPALNSLPSNDGGNSVSLTRFFGLDSSSARRRNRNP
FAMPQDGIIPLTPRFFGLDTSSSARSLFHNPNDEPFARGSQDKEHKEDDD
REQQNSEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR036879TF_MADSbox_sf
IPR033896MADS_MEF2-like