Gcaud9967.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9967.t1
Unique NameGcaud9967.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Homology
[Close]
BLAST of Gcaud9967.t1 vs. uniprot
Match: A0A2V3J260_9FLOR (Mitochondrial intermembrane space cysteine motif-containing protein MIX17 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J260_9FLOR)

HSP 1 Score: 201 bits (510), Expect = 5.770e-63
Identity = 116/177 (65.54%), Postives = 126/177 (71.19%), Query Frame = 0 
Query:    1 MARRSSRPSGGRRAAPARTAARPPARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPVPAQPAQQGSAMGGFMANVASTGLGVMAGRAMDRALFGGSGSEPEPVVETASAPAAAPYEFQAEEQLPDTVCAREVLEFKKCMERSGSDVAACQWNIDILAACQRQQQELGFANAGRL 177
            M RR+SRPSGGRR APAR  AR P RSA                          XXX   PAQPAQQGSAMGGFMANVASTG+GVMAGRAMDRA FGG GS P P     +   AAPYE   +EQLPD+VCARE+ EFKKCMER+GSD++ACQWNID+LAACQRQQQELGFANAGRL
Sbjct:    1 MPRRTSRPSGGRRPAPARGPARAPTRSASTRSRPAPPPAQTRAKSTAPPPQKATXXXXXAPAQPAQQGSAMGGFMANVASTGMGVMAGRAMDRAFFGG-GSAPAPEYAPEAESPAAPYEVTTDEQLPDSVCAREISEFKKCMERNGSDISACQWNIDVLAACQRQQQELGFANAGRL 176
The following BLAST results are available for this feature:
BLAST of Gcaud9967.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J260_9FLOR5.770e-6365.54Mitochondrial intermembrane space cysteine motif-c... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availablePANTHERPTHR13523:SF2COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2, ISOFORM A-RELATEDcoord: 1..167
NoneNo IPR availablePANTHERPTHR13523COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77coord: 1..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_502_length_23533_cov_4.649518contigNODE_502_length_23533_cov_4.649518:224..757 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9967.t1Gcaud9967.t1Gracilaria caudata M_176_S67 malemRNANODE_502_length_23533_cov_4.649518 224..757 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9967.t1 ID=Gcaud9967.t1|Name=Gcaud9967.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MARRSSRPSGGRRAAPARTAARPPARSASTRARPAPPPAQTRARSTAPAT
QKSAAAQPPVPAQPAQQGSAMGGFMANVASTGLGVMAGRAMDRALFGGSG
SEPEPVVETASAPAAAPYEFQAEEQLPDTVCAREVLEFKKCMERSGSDVA
ACQWNIDILAACQRQQQELGFANAGRL*
back to top