Gcaud9954.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9954.t1
Unique NameGcaud9954.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length393
Homology
BLAST of Gcaud9954.t1 vs. uniprot
Match: A0A2V3IQR8_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR8_9FLOR)

HSP 1 Score: 385 bits (990), Expect = 2.930e-129
Identity = 187/258 (72.48%), Postives = 218/258 (84.50%), Query Frame = 0
Query:  135 PENQSVTSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNNMLPRSPTVEVKHKVHILDHAITALQAMHQENANLELFLAMRSKPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVWQSDPPNMSLVHTRLRGTPMQYPALNTLARFSAAQEQLPIASDFAGRSFETRAPFWASSPSQLCQVVNRAQLMAAARLHSGFSVPVPMAGEIPFVVSFYDVRQRDRDATQLHSAAFAAVCVGNAWAAKQAESLAS 392
            PENQS+TSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNN+LPRSPTVEVKHKVHILDHAITALQ MHQ+NANL+L LA+RS+PR+V WVDSF+PTA+SIQ AL+P I L+ HT AWPYAEVW + PP+++L+HT  R T M +PALN LA  SAAQ QL  A DF G+ FETR P W+ SP Q CQV  RAQL+AAAR+   F+VP+P+AG++  VV+F+DVRQR+RD TQ+  AAFAAVCVGNAWAAKQA +LAS
Sbjct:  131 PENQSITSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNNILPRSPTVEVKHKVHILDHAITALQEMHQQNANLQLLLALRSRPRLVKWVDSFVPTASSIQQALDPFISLVCHTAAWPYAEVWHAQPPHINLIHTSPRATTMHFPALNHLAHVSAAQTQLCFADDFVGKCFETRVPRWSCSPVQQCQVAQRAQLLAAARIQCAFAVPIPVAGDVSHVVAFFDVRQRERDTTQVQFAAFAAVCVGNAWAAKQASALAS 388          
BLAST of Gcaud9954.t1 vs. uniprot
Match: A0A7S1TET1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET1_9RHOD)

HSP 1 Score: 111 bits (277), Expect = 4.630e-23
Identity = 79/251 (31.47%), Postives = 119/251 (47.41%), Query Frame = 0
Query:  155 HNTHTRRCRARLNGRFDTLNNMLPRSPT-VEVKHKVHILDHAITALQAMHQENANLELFLAMRSKPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVW--------------QSDPPNM-----SLVHTRLRGTPMQYPALNTLARFSAAQEQLPIASDFAGRSFETRAPFWASSPSQLCQVVNRAQLMAAARLHSGFSVPVPMAGEIPFVVSFYDVRQRDRDATQLHSAAFAAVCVGNAWAAK 385
            H +HTRRCR ++N +F TL N LP  PT  E+KHK  ILD++I  L+ +    A LE  LA+ ++  ++ WVD  +  A     A+NP + ++    AW  AE+W              QS+ P       +  H  L   P ++  ++     S   +  P      GR + T  P W    S   QV  RA+L + A L +  S+P  + G +  VV  YD  +R+ D   L  A   A+ +GNA+ A+
Sbjct:  267 HKSHTRRCREKVNEKFQTLMNELPPPPTGTEIKHKAQILDYSIRVLKDLASRKAALESELALSNRRNLLGWVDRVVNDAEDFPDAINPFLKMMCSKKAWKCAELWVPVEERVMVSCPLPQSETPTRLKLLRASFHENLEQDPPRHHRIHEFIDESRRFKFTPTCGS-PGRVYSTMRPEWLHDLSDE-QVFPRAELASKAGLVTCLSIPFLINGRVRGVVCLYDDEKRECDMGDLDLAFDIAILIGNAFGAR 515          
BLAST of Gcaud9954.t1 vs. uniprot
Match: R7QJ09_CHOCR (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ09_CHOCR)

HSP 1 Score: 103 bits (256), Expect = 3.200e-21
Identity = 87/267 (32.58%), Postives = 117/267 (43.82%), Query Frame = 0
Query:  155 HNTHTRRCRARLNGRFDTLNNMLPRSPT-VEVKHKVHILDHAITALQAMHQENANLELFLAMRSKPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVW------------------QSDPPNMSLVHTRLRGTPMQY---------------PALNT-LARF--SAAQEQLPIASDFAGRSFETRAPFWASSPSQLCQVVNRAQLMAAARLHSGFSVPVPMAGEIPFVVSFYDVRQRDRDATQLHSAAFAAVCVGNAWAA 384
            HN+HTRRCRA++N +F  L ++LP  P    +KHK  ILD+AI   + +H     LE  LA+ S+ ++ AWVD  +  + S+Q AL P + LI   G W Y+E W                   S   N+    T L G   +                P L T L RF   +   Q     D  GR   T  P W  S +   +   RA L   A L   F VPV + G I  V  F+D  QR  DA  +  A   +  +GNA+ A
Sbjct:   44 HNSHTRRCRAKVNLKFQELLSILPTPPPKTGIKHKAQILDYAIRVYRDIHARKTLLEAELALSSRSQLNAWVDGIVLRSISLQDALAPYLSLICTKGGWKYSEAWIPAQQPIPSQPVRGKVEAVSGESNVLTPTTLLSGPTARLRLGLAVIPSLGNTDDPDLQTKLERFRDKSRAYQCKARVDLPGRVMCTMRPEWLPSLNDQ-EAFQRAHLAHNANLVVCFGVPVFICGHIAAVAVFFDTDQRAYDAKCVDLADNISGLLGNAFGA 309          
BLAST of Gcaud9954.t1 vs. uniprot
Match: A0A1X6PIG4_PORUM (BHLH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIG4_PORUM)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-14
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query:  139 SVTSGHASPTQQRRNHHNTHTRRCRARLNGRFDTLNNMLPRSP-TVEVKHKVHILDHAITALQAMHQENANLELFLAMRSKPRVVAWVDSFIPTATSIQTALNPLIDLISHTGAWPYAEVWQSDP 262
            SV S  A     R++ HN+HTR+CRA++N +FD L  +LP  P + +VKHK  ILD+ I   + +      LE  LA+ ++  + AWVD+ + ++ ++  AL P + LI+    + YAE+W   P
Sbjct:  327 SVVSTEAGVRGMRKDVHNSHTRKCRAKVNTKFDELLTLLPPHPDSFQVKHKAQILDYTIHMYKRIQARKNQLEAELALSTRANLAAWVDTVVASSRTLPEALRPYLHLIAVQKRFRYAELWLPQP 451          
The following BLAST results are available for this feature:
BLAST of Gcaud9954.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IQR8_9FLOR2.930e-12972.48BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A7S1TET1_9RHOD4.630e-2331.47Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
R7QJ09_CHOCR3.200e-2132.58BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A1X6PIG4_PORUM2.520e-1436.80BHLH domain-containing protein n=1 Tax=Porphyra um... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 142..218
e-value: 5.4E-10
score: 41.1
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 148..215
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 151..202
e-value: 1.4E-4
score: 21.8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 150..202
score: 10.442075
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_556_length_22202_cov_4.379087contigNODE_556_length_22202_cov_4.379087:11130..12784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9954.t1Gcaud9954.t1Gracilaria caudata M_176_S67 malemRNANODE_556_length_22202_cov_4.379087 11130..12784 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9954.t1 ID=Gcaud9954.t1|Name=Gcaud9954.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=393bp
MRVGDGAPPPRVKNSRKNAPYSRANFVRAVSRMSRARPPQLSSVRMSLSV
STPSAKSRSHHTAMSNTRLPSSPHTPPPAFDEDDDDASLPEQNEYDPTDD
DSHHSDFPNTESSSRPPQSQPQPPSRVRARTNTQPENQSVTSGHASPTQQ
RRNHHNTHTRRCRARLNGRFDTLNNMLPRSPTVEVKHKVHILDHAITALQ
AMHQENANLELFLAMRSKPRVVAWVDSFIPTATSIQTALNPLIDLISHTG
AWPYAEVWQSDPPNMSLVHTRLRGTPMQYPALNTLARFSAAQEQLPIASD
FAGRSFETRAPFWASSPSQLCQVVNRAQLMAAARLHSGFSVPVPMAGEIP
FVVSFYDVRQRDRDATQLHSAAFAAVCVGNAWAAKQAESLAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom