Gcaud9938.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9938.t1
Unique NameGcaud9938.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length271
Homology
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BLAST of Gcaud9938.t1 vs. uniprot
Match: A0A2V3IIW7_9FLOR (Protein unc-45-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW7_9FLOR)

HSP 1 Score: 285 bits (728), Expect = 3.560e-93
Identity = 148/258 (57.36%), Postives = 187/258 (72.48%), Query Frame = 0 
Query:   14 PLRSAGPHPDLSYEVSIASEQPEAITSSLGDIVSVSVKYPHK-QPMIFSFVIGEKQARPWVQELATGIAVNSTSTLMQDENQVCSLTVTALTKIPCLAKEEVQIRADGWRKQGNDAFRAANKFKDYKSALLTYSKALDASKTAADPARIATVRSNLAMCHLRMSHWVNVIADCDALEKPDAKSFYRRAQANIELDAMVRAIRDIRCAKDLVPNDTFVEKETTRVEKQTVEVLNKRRQNFAETYSIMLQSPIFKQPIID 270
            PL   GP  +LSY V   S   +   SS GD+VSV +++  K + +I SF+IG KQA+PWVQELATG+AVN+TS L   + QVC++TVTA+T  P L+ +E++ +AD  R++GN AF+AA  FKDY  A+L Y KALDAS  A D  R A  RSNLAMCHL+   W+NVIAD DAL  PDAK+FYRRAQA IE D +V +IRD+R A  LVP+D FV +E  R+EK++ EVL KRRQ FAETYS MLQSP+FKQP++D
Sbjct:   15 PLSVPGPDINLSYTVLKPSVTGDGDVSSRGDVVSVRIQFTDKPKSLIISFIIGRKQAKPWVQELATGLAVNATSILKHQDKQVCTVTVTAITPTPHLSADELRTKADEVRQEGNAAFKAAVTFKDYTKAILLYYKALDASLNAGDNERAAKARSNLAMCHLKRQEWINVIADVDALPNPDAKAFYRRAQARIEFDDVVGSIRDMRVAASLVPDDKFVVQEAARIEKESTEVLLKRRQQFAETYSNMLQSPVFKQPVMD 272
The following BLAST results are available for this feature:
BLAST of Gcaud9938.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IIW7_9FLOR3.560e-9357.36Protein unc-45-like n=1 Tax=Gracilariopsis chorda ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 108..253
e-value: 5.0E-19
score: 70.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 133..229
NoneNo IPR availablePANTHERPTHR46423RNA POLYMERASE II-ASSOCIATED PROTEIN 3coord: 118..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_403_length_26621_cov_4.526008contigNODE_403_length_26621_cov_4.526008:24353..25165 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9938.t1Gcaud9938.t1Gracilaria caudata M_176_S67 malemRNANODE_403_length_26621_cov_4.526008 24353..25165 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9938.t1 ID=Gcaud9938.t1|Name=Gcaud9938.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=271bp
MGEARELIEESRYPLRSAGPHPDLSYEVSIASEQPEAITSSLGDIVSVSV
KYPHKQPMIFSFVIGEKQARPWVQELATGIAVNSTSTLMQDENQVCSLTV
TALTKIPCLAKEEVQIRADGWRKQGNDAFRAANKFKDYKSALLTYSKALD
ASKTAADPARIATVRSNLAMCHLRMSHWVNVIADCDALEKPDAKSFYRRA
QANIELDAMVRAIRDIRCAKDLVPNDTFVEKETTRVEKQTVEVLNKRRQN
FAETYSIMLQSPIFKQPIID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf