Gcaud9930.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9930.t1
Unique NameGcaud9930.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Homology
BLAST of Gcaud9930.t1 vs. uniprot
Match: A0A2V3J0D7_9FLOR (Alanine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0D7_9FLOR)

HSP 1 Score: 294 bits (753), Expect = 2.720e-91
Identity = 136/169 (80.47%), Postives = 153/169 (90.53%), Query Frame = 0
Query:    1 MTDASNAAHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            M+D +N +   WPAARVR +F+ FFV+ ++H FVASSPVVPHDD+ LLFA AGMNQFKPK LGTVSPDSPLAP+KR+CNSQKCI AGGKHNDLDDVG DTYHHTFFEMLGNWSFGDYFK++AIDMA++LL+D Y LPK+RIYATYFGGDESQGLEPDLEAKQIWLKHLP
Sbjct:    1 MSDIANGSA--WPAARVRQQFIDFFVNNHQHTFVASSPVVPHDDNTLLFANAGMNQFKPKFLGTVSPDSPLAPMKRACNSQKCIRAGGKHNDLDDVGLDTYHHTFFEMLGNWSFGDYFKEQAIDMAMSLLVDTYGLPKERIYATYFGGDESQGLEPDLEAKQIWLKHLP 167          
BLAST of Gcaud9930.t1 vs. uniprot
Match: Q94GG9_ORYSJ (Alanine--tRNA ligase n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q94GG9_ORYSJ)

HSP 1 Score: 242 bits (617), Expect = 5.960e-77
Identity = 115/163 (70.55%), Postives = 130/163 (79.75%), Query Frame = 0
Query:    7 AAHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            AA  +WPA+RVR  F+ FF S++  ++  SSPVVP DD  LLFA AGMNQFKP  LGT +PD+PL  L+R+CN+QKCI AGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK+EAI  A  LL  VY LP DRIYATYFGGDE  GL PD E+K IWLK+LP
Sbjct:    2 AASTEWPASRVRETFISFFESKSHTRW-PSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRLRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVYKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKYLP 163          
BLAST of Gcaud9930.t1 vs. uniprot
Match: A0A7S0SRE6_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRE6_9STRA)

HSP 1 Score: 238 bits (608), Expect = 4.780e-76
Identity = 109/162 (67.28%), Postives = 131/162 (80.86%), Query Frame = 0
Query:    8 AHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            ++I+WP ++VRS+F+ +F S+  H    SSPVVP +D  LLFA AGMNQFKP  +GTV P SPLA LKR+ NSQKCI AGGKHNDL+DVGKDTYHHTFFEMLG WSFGDYFK+EAID A  +L++VY LP DR+YA+YFGGDES G+  DLEA+  WLK+LP
Sbjct:   22 SNIEWPVSKVRSQFIDYFTSKQNHVNYKSSPVVPVNDPTLLFANAGMNQFKPIFIGTVDPSSPLAELKRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGTWSFGDYFKEEAIDWAYDILVNVYKLPPDRLYASYFGGDESLGIPADLEARDYWLKYLP 183          
BLAST of Gcaud9930.t1 vs. uniprot
Match: A0A7J8PB19_GOSRA (Alanine--tRNA ligase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PB19_GOSRA)

HSP 1 Score: 235 bits (599), Expect = 1.050e-75
Identity = 110/160 (68.75%), Postives = 127/160 (79.38%), Query Frame = 0
Query:   10 IDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            ++WPA +VR  F+ FF  +N H +  SSPVVPH+D  LLFA AGMNQ+KP  LGTV P++ ++ L R+CN+QKCI AGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK+EAI+ A  LL  VY LP DRIYATYFGGD S GL PD EA+ IWLK LP
Sbjct:   65 VEWPAKKVRDTFIKFFEGKN-HVYWNSSPVVPHNDPTLLFANAGMNQYKPIFLGTVDPNTAMSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDASSGLPPDNEARDIWLKFLP 223          
BLAST of Gcaud9930.t1 vs. uniprot
Match: UPI000B8CEC38 (alanine--tRNA ligase-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CEC38)

HSP 1 Score: 239 bits (610), Expect = 2.290e-75
Identity = 114/165 (69.09%), Postives = 128/165 (77.58%), Query Frame = 0
Query:    5 SNAAHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            + +  I WPA RVR  F+ FF  +N H    SSPVVPH+D  LLFA AGMNQFKP  LGTV P++ L+ LKR+CN+QKCI AGGKHNDLDDVGKDTYHHTFFEM+GNWSFGDYFK+EAI+ A  LL  VY LP DRIYATYFGGDE  GL PD EA+ IWLK LP
Sbjct:    4 AESQEIQWPAKRVRDTFIKFFEEKN-HVNWRSSPVVPHNDPTLLFANAGMNQFKPIFLGTVDPNTALSKLKRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMIGNWSFGDYFKKEAIEWAWELLTQVYGLPADRIYATYFGGDEKAGLAPDTEARDIWLKFLP 167          
BLAST of Gcaud9930.t1 vs. uniprot
Match: A0A446S024_TRITD (Alanine--tRNA ligase n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446S024_TRITD)

HSP 1 Score: 233 bits (595), Expect = 2.970e-75
Identity = 114/159 (71.70%), Postives = 123/159 (77.36%), Query Frame = 0
Query:   11 DWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            DW AARVR  F+ FF S++ H    SSPVVP DD  LLFA AGMNQFKP  LGT +PDS L  L R+CN+QKCI AGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK+ AI  A  LL  VY LP DRIYATYFGGDE  GL PD E+K IWLK+LP
Sbjct:    6 DWTAARVREVFIDFFKSKS-HTPWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDSQLGRLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEGAIGYAWELLTQVYKLPTDRIYATYFGGDEKAGLAPDTESKNIWLKYLP 163          
BLAST of Gcaud9930.t1 vs. uniprot
Match: R7QPY3_CHOCR (Alanine--tRNA ligase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPY3_CHOCR)

HSP 1 Score: 251 bits (641), Expect = 3.730e-75
Identity = 118/158 (74.68%), Postives = 128/158 (81.01%), Query Frame = 0
Query:   12 WPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            WPA+RVRS F+ FF   + H FV SSPVVPHDD  LLFA AGMNQ+KP  LG   PDS L+ LKR+CNSQKCI AGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK  AIDMA+ LL   Y LP +RIYATYFGGD  QGLEPDLEA+Q WLK+LP
Sbjct:   15 WPASRVRSTFIDFFSQSHAHTFVPSSPVVPHDDPTLLFANAGMNQYKPIFLGVAPPDSFLSTLKRACNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKAGAIDMAMELLTGKYGLPAERIYATYFGGDGKQGLEPDLEARQFWLKYLP 172          
BLAST of Gcaud9930.t1 vs. uniprot
Match: A0A835RER5_VANPL (Alanine--tRNA ligase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RER5_VANPL)

HSP 1 Score: 233 bits (594), Expect = 3.820e-75
Identity = 114/163 (69.94%), Postives = 126/163 (77.30%), Query Frame = 0
Query:    7 AAHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            A  +DWPA RVR  F+ FF  + +H    SSPVVP DD  LLFA AGMNQFKP  LGTV+P +PL  L R+ N+QKCI AGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK+EAI  A  LL +VY LPK+RIYATYFGGDE  GL PD EAK IWL+ LP
Sbjct:   44 AEALDWPATRVRETFVSFFEGK-QHVNWNSSPVVPLDDPTLLFANAGMNQFKPIFLGTVNPSNPLGKLTRAYNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAISWAWELLTEVYKLPKNRIYATYFGGDEKSGLVPDNEAKSIWLEFLP 205          
BLAST of Gcaud9930.t1 vs. uniprot
Match: A0A077WQY2_9FUNG (Alanine--tRNA ligase n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WQY2_9FUNG)

HSP 1 Score: 231 bits (589), Expect = 5.340e-75
Identity = 108/161 (67.08%), Postives = 119/161 (73.91%), Query Frame = 0
Query:    5 SNAAHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWL 165
            S    ++WP  RVRS F+ +FV  N+H FV SS  +PHDD  LLFA AGMNQ+K   LGTV P+SPLA LK + NSQKCI AGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK  A  M    L  V  LP DR+Y TYFGGDE  GLE DLEAKQIW+
Sbjct:    2 SQQQQLEWPVNRVRSAFIDYFVKENQHTFVPSSSTIPHDDPTLLFANAGMNQYKSVFLGTVDPNSPLAGLKSATNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKTGAAKMCWTFLTQVLNLPTDRLYVTYFGGDEKMGLEADLEAKQIWM 162          
BLAST of Gcaud9930.t1 vs. uniprot
Match: A0A1Q3BFW2_CEPFO (Alanine--tRNA ligase (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BFW2_CEPFO)

HSP 1 Score: 233 bits (593), Expect = 9.400e-75
Identity = 112/163 (68.71%), Postives = 126/163 (77.30%), Query Frame = 0
Query:    7 AAHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFAIAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDESQGLEPDLEAKQIWLKHLP 169
            A+  +WPA RVR  F++FF  ++ H    SSPVVPHDD  LLFA AGMNQFK   LGTV P++ L+ L R+CN+QKCI AGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK+EAI+ A  LL  VY LP DR YATYFGGDE  GL PD EA+ IWLK LP
Sbjct:   72 ASETEWPANRVRETFINFFQGKS-HIDWPSSPVVPHDDPTLLFANAGMNQFKRIFLGTVDPNTGLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPPDRFYATYFGGDEKSGLAPDTEARDIWLKFLP 233          
The following BLAST results are available for this feature:
BLAST of Gcaud9930.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0D7_9FLOR2.720e-9180.47Alanine--tRNA ligase n=1 Tax=Gracilariopsis chorda... [more]
Q94GG9_ORYSJ5.960e-7770.55Alanine--tRNA ligase n=1 Tax=Oryza sativa subsp. j... [more]
A0A7S0SRE6_9STRA4.780e-7667.28Alanine--tRNA ligase (Fragment) n=1 Tax=Chromulina... [more]
A0A7J8PB19_GOSRA1.050e-7568.75Alanine--tRNA ligase n=1 Tax=Gossypium raimondii T... [more]
UPI000B8CEC382.290e-7569.09alanine--tRNA ligase-like n=1 Tax=Carica papaya Ta... [more]
A0A446S024_TRITD2.970e-7571.70Alanine--tRNA ligase n=1 Tax=Triticum turgidum sub... [more]
R7QPY3_CHOCR3.730e-7574.68Alanine--tRNA ligase n=1 Tax=Chondrus crispus TaxI... [more]
A0A835RER5_VANPL3.820e-7569.94Alanine--tRNA ligase n=1 Tax=Vanilla planifolia Ta... [more]
A0A077WQY2_9FUNG5.340e-7567.08Alanine--tRNA ligase n=1 Tax=Lichtheimia ramosa Ta... [more]
A0A1Q3BFW2_CEPFO9.400e-7568.71Alanine--tRNA ligase (Fragment) n=1 Tax=Cephalotus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)GENE3D3.30.930.10Bira Bifunctional Protein; Domain 2coord: 13..169
e-value: 1.9E-63
score: 216.2
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)SUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 14..151
IPR018164Alanyl-tRNA synthetase, class IIc, N-terminalPFAMPF01411tRNA-synt_2ccoord: 17..167
e-value: 1.8E-60
score: 205.0
NoneNo IPR availablePANTHERPTHR11777:SF34ALANINE--TRNA LIGASE, CYTOPLASMICcoord: 11..169
NoneNo IPR availablePANTHERPTHR11777ALANYL-TRNA SYNTHETASEcoord: 11..169
IPR018165Alanyl-tRNA synthetase, class IIc, core domainPROSITEPS50860AA_TRNA_LIGASE_II_ALAcoord: 12..169
score: 27.36132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_759_length_18503_cov_4.273680contigNODE_759_length_18503_cov_4.273680:10385..10894 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9930.t1Gcaud9930.t1Gracilaria caudata M_176_S67 malemRNANODE_759_length_18503_cov_4.273680 10385..10894 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9930.t1 ID=Gcaud9930.t1|Name=Gcaud9930.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MTDASNAAHIDWPAARVRSEFMHFFVSRNEHKFVASSPVVPHDDSPLLFA
IAGMNQFKPKVLGTVSPDSPLAPLKRSCNSQKCILAGGKHNDLDDVGKDT
YHHTFFEMLGNWSFGDYFKQEAIDMAVALLLDVYCLPKDRIYATYFGGDE
SQGLEPDLEAKQIWLKHLP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045864aa-tRNA-synth_II/BPL/LPL
IPR018164Ala-tRNA-synth_IIc_N
IPR018165Ala-tRNA-synth_IIc_core