Gcaud9929.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9929.t1
Unique NameGcaud9929.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length197
Homology
BLAST of Gcaud9929.t1 vs. uniprot
Match: A0A2V3J0D7_9FLOR (Alanine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0D7_9FLOR)

HSP 1 Score: 316 bits (810), Expect = 4.060e-99
Identity = 159/239 (66.53%), Postives = 178/239 (74.48%), Query Frame = 0
Query:    1 MGQTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVDTGA-------------------------------------------DDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGSDAFFL 196
            MG+TGPCGPCTELHFDR+GGRDAA+LVNMDDPT IEIWNLVF QFNREPD SLRLLP+KHVDTG                                            +D DGVDMAYRV+ DHIRTLT AITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNA P FFS+LV +VVSS+ E FPELHEK +HV++VIAHE+  FLRTLDRGT+RFKQIV++LK  NA ++SG+DAFFL
Sbjct:  183 MGETGPCGPCTELHFDRIGGRDAASLVNMDDPTVIEIWNLVFIQFNREPDGSLRLLPNKHVDTGMGFERVTSILQNKMSNYDTDVFMPIFDAIKEATGCRPYSGLLGKEDTDGVDMAYRVVADHIRTLTFAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAQPKFFSNLVDSVVSSMGEAFPELHEKRKHVMEVIAHEETAFLRTLDRGTDRFKQIVDELKKTNAFQISGADAFFL 421          
BLAST of Gcaud9929.t1 vs. uniprot
Match: R7QPY3_CHOCR (Alanine--tRNA ligase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPY3_CHOCR)

HSP 1 Score: 303 bits (775), Expect = 5.540e-94
Identity = 151/239 (63.18%), Postives = 172/239 (71.97%), Query Frame = 0
Query:    1 MGQTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVDTGA-------------------------------------------DDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGSDAFFL 196
            MG TGPCGPCTELHFDR+GGRDA+ALVNMDDPT IEIWNLVF QFNREPD SLR LP+KHVDTG                                            +DVDGVDMAYRVIGDHIRTLT+A+TDGAVPDSDGRGYVLRR+LRRAVRYGREFL AP  FFS LV +VV+S+ E FPELH+K +HV++++AHE+ TFLRTL RGTERFKQI  +L+      +SG+DAFFL
Sbjct:  188 MGDTGPCGPCTELHFDRIGGRDASALVNMDDPTVIEIWNLVFIQFNREPDGSLRQLPNKHVDTGMGFERVTSILQEKMSNYDTDVFMPIFEAIRIATSCRPYAGLLGKEDVDGVDMAYRVIGDHIRTLTIAVTDGAVPDSDGRGYVLRRILRRAVRYGREFLKAPDGFFSGLVDSVVASMGEAFPELHQKRDHVVEILAHEETTFLRTLGRGTERFKQIRRELEKTGGKVISGADAFFL 426          
BLAST of Gcaud9929.t1 vs. uniprot
Match: A0A1X6P2K2_PORUM (Alanine--tRNA ligase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2K2_PORUM)

HSP 1 Score: 243 bits (621), Expect = 7.080e-72
Identity = 128/239 (53.56%), Postives = 148/239 (61.92%), Query Frame = 0
Query:    1 MGQTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVDTG-------------------------------------------ADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGSDAFFL 196
            MG  GPCGPC+ELHFDR+GGRDAAALVN DDP  IEIWNLVF Q++RE D  L  LP+KHVDTG                                            DDVDGVDMAYRV+ DH+RTL+ AI DGAVP S+GRGYVLRR+LRRAVRYG +FL     FF+ LV AVV  +   FPEL EK E V+ VIA E+ TF  TL+RG ERF +   +LK    T V G++AFFL
Sbjct:  180 MGDVGPCGPCSELHFDRIGGRDAAALVNADDPAVIEIWNLVFIQYSREADGKLNALPAKHVDTGMGFERLTSILQGKPSNYDTDVFTPIFDAIQEGTGCRAYGGKLGTDDVDGVDMAYRVVADHVRTLSFAIADGAVPSSEGRGYVLRRILRRAVRYGSQFLGGSDGFFARLVPAVVELMGTAFPELVEKKELVVSVIADEESTFSSTLERGIERFNKTAAELKAGGKTVVPGTEAFFL 418          
BLAST of Gcaud9929.t1 vs. uniprot
Match: A0A835REV9_VANPL (Alanine--tRNA ligase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835REV9_VANPL)

HSP 1 Score: 239 bits (609), Expect = 5.130e-71
Identity = 127/239 (53.14%), Postives = 152/239 (63.60%), Query Frame = 0
Query:    1 MGQTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVDTG-------------------------------------------ADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGSDAFFL 196
            MG TGPCGPCTE+HFDR+G RDAAALVN DDPT IEIWNLVF QFNRE D SL+ LP+KHVDTG                                           ADD+D VDMAYRV+ DHIRTL+ AI DG+ P ++GR YVLRR+LRRAVRYGRE L A   FFSSLVG +VS + + FPEL +    + D+I+ E+ +F RTL +G E+FK+ V+DLK      +SG DAF L
Sbjct:   25 MGDTGPCGPCTEIHFDRVGNRDAAALVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFQPIFDAIQQITGARLYSGKVGADDIDKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAQEGFFSSLVGVLVSVMGDVFPELKQHEVKIKDIISEEEASFGRTLVKGIEKFKKAVQDLKGDT---LSGQDAFIL 260          
BLAST of Gcaud9929.t1 vs. uniprot
Match: L7QP87_9NEOP (Alanine--tRNA ligase (Fragment) n=2 Tax=Tineoidea TaxID=41011 RepID=L7QP87_9NEOP)

HSP 1 Score: 223 bits (569), Expect = 8.770e-71
Identity = 113/222 (50.90%), Postives = 139/222 (62.61%), Query Frame = 0
Query:    3 QTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVD-------------------------------------------TGADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLK 181
            +TGPCGPC+ELHFDR+GGRDAA LVNMDDP  +EIWNLVF QFNRE D SL+LLP KH+D                                            G+DD DG+DMAYRV+ DH RTLT+A++DG  PD+ GRGYVLRR+LRRAVRY  E LNA P FF+SLV  VVS +   FPE+ +  E+VI++I  E+  FL+TL RG     + +E L+
Sbjct:    1 ETGPCGPCSELHFDRIGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHIDCGLGLERLVSVIQNKRANYDTDFFMPLFDIIQKGTGVRPYSGKVGSDDTDGIDMAYRVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVHTVVSLLGNTFPEIKKDPEYVINIINEEEVQFLKTLSRGRNLLNRTIEKLE 222          
BLAST of Gcaud9929.t1 vs. uniprot
Match: D0UKL8_9BILA (Alanine--tRNA ligase (Fragment) n=1 Tax=Peripatus sp. 'Pep' TaxID=681529 RepID=D0UKL8_9BILA)

HSP 1 Score: 222 bits (565), Expect = 3.550e-70
Identity = 113/225 (50.22%), Postives = 142/225 (63.11%), Query Frame = 0
Query:    3 QTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVDTGA-------------------------------------------DDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKN 184
            +TGPCGPC+E+H+DR+GGR+AA+ VNMDDP  +EIWNLVF Q+NRE D SL+LLP KH+D G                                            +DVDG+DMAYRV+ DH RTLT+A++DG  PD+ GRGYVLRR+LRRAVRYG E LNAPP FF SLV  VV+ + + FPEL +  E VID+I  E+  FL+TL RG    ++ V+ L N N
Sbjct:    1 ETGPCGPCSEIHYDRIGGRNAASFVNMDDPDVLEIWNLVFIQYNRENDGSLKLLPKKHIDCGMGFERLVSVIQNKNSNYDTDIFVPLFDAIQKGTGTRPYEGKVGNEDVDGIDMAYRVLADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAPPGFFGSLVHVVVNLLGDAFPELKKDPEMVIDIINEEEVQFLKTLARGRRLLERTVDKLGNCN 225          
BLAST of Gcaud9929.t1 vs. uniprot
Match: A0A068VB08_COFCA (Alanine--tRNA ligase n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068VB08_COFCA)

HSP 1 Score: 228 bits (581), Expect = 5.200e-70
Identity = 122/239 (51.05%), Postives = 145/239 (60.67%), Query Frame = 0
Query:    1 MGQTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVDTG-------------------------------------------ADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGSDAFFL 196
            MG TGPCGPCTE+HFDR+G RDAA+LVN DDPT IEIWNLVF QFNRE D SL+ LP+KHVDTG                                           ADD D VDMAYRV+ DHIRTL+ AI DGA P ++GR YVLRR+LRRAVRYG E L A   FFS LV  VV  + + FPEL +   H+ + IA E+ +F RTL  G E+FK+  +D++      +SG DAF L
Sbjct:   69 MGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTVIEIWNLVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARAYSRKIGADDADNVDMAYRVVADHIRTLSFAIADGACPGNEGREYVLRRILRRAVRYGTEVLKAKQGFFSGLVKVVVEVMGDVFPELRQHEVHISNTIAIEEASFGRTLVHGIEKFKKAAQDVQGNT---LSGQDAFVL 304          
BLAST of Gcaud9929.t1 vs. uniprot
Match: A9XZ05_9NEOP (Alanine--tRNA ligase (Fragment) n=71 Tax=Ditrysia TaxID=37567 RepID=A9XZ05_9NEOP)

HSP 1 Score: 221 bits (563), Expect = 7.130e-70
Identity = 113/223 (50.67%), Postives = 138/223 (61.88%), Query Frame = 0
Query:    3 QTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVD-------------------------------------------TGADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKN 182
            +TGPCGPC+ELH+DR+GGRDAA LVNMDDP  +EIWNLVF QFNRE D SL+LLP KH+D                                            GADDVDG+DMAYRV+ DH RTLT+A++DG  PD+ GRGYVLRR+LRRAVRY  E LNA P FF+SLV  VV  + + FPE+ +  E +I +I  E+  FL+TL RG     + +E L N
Sbjct:    1 ETGPCGPCSELHYDRIGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHIDCGLGLERLVSVIQNKRANYDTDFFXPIFKAIENGTGARPYSGKVGADDVDGIDMAYRVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPXFFASLVYTVVELLGDVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRNIEKLNN 223          
BLAST of Gcaud9929.t1 vs. uniprot
Match: L7QLY6_9NEOP (Alanine--tRNA ligase (Fragment) n=2 Tax=Palaephatidae TaxID=98973 RepID=L7QLY6_9NEOP)

HSP 1 Score: 221 bits (563), Expect = 7.130e-70
Identity = 116/232 (50.00%), Postives = 140/232 (60.34%), Query Frame = 0
Query:    3 QTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVD-------------------------------------------TGADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGS 191
            +TGPCGPC+ELHFDR+GGRDAA LVNMDDP  +EIWNLVF QFNRE D SL+LLP KH+D                                            G DDVDG+DMAYRV+ DH RTLT+A++DG  PD+ GRGYVLRR+LRRAVRY  E LNA P FF+SLV  VV S+ E FPE+ +  E +I  I  E+  FL+TL RG         +L N+  T++  S
Sbjct:    1 ETGPCGPCSELHFDRIGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHIDCGLGLERLVSVIQDKRANYDTDFFMPLFDAIKKGTGVRPYTGKVGVDDVDGIDMAYRVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVNTVVESLGETFPEVTKDPESIIQTINEEEIQFLKTLSRG--------RNLLNRTMTKLGDS 224          
BLAST of Gcaud9929.t1 vs. uniprot
Match: A0A835RND8_VANPL (Alanine--tRNA ligase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RND8_VANPL)

HSP 1 Score: 239 bits (609), Expect = 1.090e-69
Identity = 127/239 (53.14%), Postives = 152/239 (63.60%), Query Frame = 0
Query:    1 MGQTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPDSSLRLLPSKHVDTG-------------------------------------------ADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGRGYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEHVIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGSDAFFL 196
            MG TGPCGPCTE+HFDR+G RDAAALVN DDPT IEIWNLVF QFNRE D SL+ LP+KHVDTG                                           ADD+D VDMAYRV+ DHIRTL+ AI DG+ P ++GR YVLRR+LRRAVRYGRE L A   FFSSLVG +VS + + FPEL +    + D+I+ E+ +F RTL +G E+FK+ V+DLK      +SG DAF L
Sbjct:  354 MGDTGPCGPCTEIHFDRVGNRDAAALVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFQPIFDAIQQITGARLYSGKVGADDIDKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAQEGFFSSLVGVLVSVMGDVFPELKQHEVKIKDIISEEEASFGRTLVKGIEKFKKAVQDLKGDT---LSGQDAFIL 589          
The following BLAST results are available for this feature:
BLAST of Gcaud9929.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0D7_9FLOR4.060e-9966.53Alanine--tRNA ligase n=1 Tax=Gracilariopsis chorda... [more]
R7QPY3_CHOCR5.540e-9463.18Alanine--tRNA ligase n=1 Tax=Chondrus crispus TaxI... [more]
A0A1X6P2K2_PORUM7.080e-7253.56Alanine--tRNA ligase n=1 Tax=Porphyra umbilicalis ... [more]
A0A835REV9_VANPL5.130e-7153.14Alanine--tRNA ligase n=1 Tax=Vanilla planifolia Ta... [more]
L7QP87_9NEOP8.770e-7150.90Alanine--tRNA ligase (Fragment) n=2 Tax=Tineoidea ... [more]
D0UKL8_9BILA3.550e-7050.22Alanine--tRNA ligase (Fragment) n=1 Tax=Peripatus ... [more]
A0A068VB08_COFCA5.200e-7051.05Alanine--tRNA ligase n=1 Tax=Coffea canephora TaxI... [more]
A9XZ05_9NEOP7.130e-7050.67Alanine--tRNA ligase (Fragment) n=71 Tax=Ditrysia ... [more]
L7QLY6_9NEOP7.130e-7050.00Alanine--tRNA ligase (Fragment) n=2 Tax=Palaephati... [more]
A0A835RND8_VANPL1.090e-6953.14Alanine--tRNA ligase n=1 Tax=Vanilla planifolia Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)GENE3D3.30.930.10Bira Bifunctional Protein; Domain 2coord: 1..66
e-value: 3.3E-22
score: 81.1
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)SUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 1..65
IPR018164Alanyl-tRNA synthetase, class IIc, N-terminalPFAMPF01411tRNA-synt_2ccoord: 1..65
e-value: 7.0E-18
score: 64.4
coord: 67..195
e-value: 2.5E-39
score: 135.3
NoneNo IPR availablePANTHERPTHR11777:SF34ALANINE--TRNA LIGASE, CYTOPLASMICcoord: 1..65
coord: 64..194
NoneNo IPR availablePANTHERPTHR11777ALANYL-TRNA SYNTHETASEcoord: 1..65
coord: 64..194
IPR018165Alanyl-tRNA synthetase, class IIc, core domainPROSITEPS50860AA_TRNA_LIGASE_II_ALAcoord: 1..196
score: 27.564117
IPR018162Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamilySUPERFAMILY101353Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)coord: 58..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_759_length_18503_cov_4.273680contigNODE_759_length_18503_cov_4.273680:9623..10342 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9929.t1Gcaud9929.t1Gracilaria caudata M_176_S67 malemRNANODE_759_length_18503_cov_4.273680 9623..10342 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9929.t1 ID=Gcaud9929.t1|Name=Gcaud9929.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
MGQTGPCGPCTELHFDRLGGRDAAALVNMDDPTAIEIWNLVFTQFNREPD
SSLRLLPSKHVDTGADDVDGVDMAYRVIGDHIRTLTLAITDGAVPDSDGR
GYVLRRVLRRAVRYGREFLNAPPNFFSSLVGAVVSSVREDFPELHEKHEH
VIDVIAHEDRTFLRTLDRGTERFKQIVEDLKNKNATEVSGSDAFFL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045864aa-tRNA-synth_II/BPL/LPL
IPR018164Ala-tRNA-synth_IIc_N
IPR018165Ala-tRNA-synth_IIc_core
IPR018162Ala-tRNA-ligase_IIc_anticod-bd