Gcaud9902.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9902.t1
Unique NameGcaud9902.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length445
Homology
BLAST of Gcaud9902.t1 vs. uniprot
Match: A0A2V3IRV0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV0_9FLOR)

HSP 1 Score: 316 bits (809), Expect = 9.310e-100
Identity = 197/464 (42.46%), Postives = 282/464 (60.78%), Query Frame = 0
Query:    1 MDKLSRNLSGEWYEIYSCVQNGVGKFNVWDVRGFYDVKFDDPWNFNLSENAVSVITACLTSFSLILFNDIVTRLLVRARHGQVVNQQMISRRRVLDSFSNPVNLLSACIARVRKSPSDSPDHVGSR--ERTGSQGLSKKTYGFLIVMSVLIVFAEFLFIFLATNQNNVYHVRLDTVPTFEFEDRGCEFLDSPAQTNSCYQVPLTEKPGFDLRASLQICTSNTVYKPEAAAAPSDE----NHYFLFLLVANVDTVQVAVVGKYQTTLENTRISVGFEQGGLSYVGMKNVTAAQMLSALLHRMERTNVTILS----NSSDTSESIV------------SANVVVDASGVDLRKSHISSY-YPVELIPENTVALTHAYFHNVLRSIMFPTQEGRGVVTLPGELQYLDQDPTPVAYYNRPWVSVVFILIVCCALLLIWTVLAVLGVESEVDSHLAGANFVKNAETTGD 441
            M + +RN S  W   Y+C + G+G ++ WD+ GFY+ KF+DP N NLSENAVS++TA   SFSLILF DIV R+ VRA+  QV ++Q++ RR +L+SFSNP+NLLS  + +++   S S    G++  E       SK+ +  L+++ +L VF EFLFIFLATNQN +Y  +LD VP FEFEDRGCE + SP   +SC Q   TEK GF+    LQIC+S TV     +AA  DE    ++  +  ++ + D V V V  +    +E T I V  E G + Y G++NV++  +L AL +R  R+N TIL     ++ D+   I+            +A+++V    VDLR++H+S   +P     +  +A+   Y H+V RSIMFPT  GRGV     E+ YLD+  TP+A+YNRPW+ V+  LI+C  LLLIW  +AV+ +E+EVDS LA   F K+  +  D
Sbjct:   10 MIRQTRNPSPAWMATYNCSRKGLGHYSKWDLHGFYEDKFNDPLNLNLSENAVSLLTALSCSFSLILFTDIVFRIAVRAKTNQV-SKQVVFRRHLLNSFSNPINLLSVLVNKLQSKQSASTSTEGTQNLEWKALTPSSKRNFTLLLLLGLLTVFVEFLFIFLATNQNKMYAFQLDEVPVFEFEDRGCERIASPV-IDSCIQESWTEKAGFNTHGYLQICSSQTV-----SAAVEDEKLSKSNGIVSFVILDTDGVDVIVRYREINAVERTTIGVILESGSV-YQGLQNVSSKSLLFALSNRFRRSNATILDTFAQDNMDSGAGILENPPTEQNAKPDAASILVSLENVDLRETHLSHILHPNSSEGDLNLAMV-IYLHDVARSIMFPTGTGRGVRLRGREILYLDEVETPLAHYNRPWIGVLPSLIICGVLLLIWIFVAVMRIENEVDSRLAWKEFFKSTMSVED 464          
BLAST of Gcaud9902.t1 vs. uniprot
Match: A0A2V3J1Z3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Z3_9FLOR)

HSP 1 Score: 315 bits (806), Expect = 2.130e-99
Identity = 204/462 (44.16%), Postives = 282/462 (61.04%), Query Frame = 0
Query:    2 DKLSRNLSGEWYEIYSCVQNGVGKFNVWDVRGFYDVKFDDPWNFNLSENAVSVITACLTSFSLILFNDIVTRLLVRARHGQVVNQQMISRRRVLDSFSNPVNLLSACIARVRKSPSDSPDHVGSRERTGSQGLS---KKTYGFLIVMSVLIVFAEFLFIFLATNQNNVYHVRLDTVPTFEFEDRGCEFLDSPAQTNSCYQVPLTEKPGFDLRASLQICTSNTV-YKPEAAAAPSDENHYFLFLL-VANVDTVQVAVVGKYQTTLENTRISVGFEQGGLSYVGMKNVTAAQMLSALLHRMERTNVTILS--------------NSSDTSESIV--SANVVVDASGVDLRKSHIS-SYYPVELIPENTVALTHAYFHNVLRSIMFPTQEGRGVVTLPGELQYLDQDPTPVAYYNRPWVSVVFILIVCCALLLIWTVLAVLGVESEVDSHLAGANFVKNAETTGD 441
            ++L RN S  W + + C Q G+ + + WD+ GFY+ KF+DP NFNLSENAVS+ITA LT+FSLILF DI+ R+ VRAR  +V +++ + R  +L+SFSNP+NLLS  I ++R   S S   VG  +      LS   K+TY    +M +L +F EFLFIFLATNQN VY ++L+ VP FEFEDRGC+ + SP  T+SC Q PLTEK GFD RA LQIC++ ++   PE  A+     +Y L L  + + D V V V+ +     ++  I+V  E G + Y G+ NV+A  +LSAL +R+ R+N T+L               N S T +  +  +A+V+VD   +DLR++H S S YP     E  +A+   Y H+V RSIMFPT   RGV     E+ YLD+  TP+AYYNRPW+ V+  LI+C  LLLIW       V+S++D  LA   F ++  T  D
Sbjct:    3 EQLKRNSSPAWMKTFHCSQKGLDEDSEWDLHGFYEDKFNDPSNFNLSENAVSLITALLTAFSLILFTDIMYRIAVRARSHRV-SKKAVFRYHLLNSFSNPINLLSCFIEKLRSRFSASAP-VGGTQNLEWNTLSRSTKRTYTAYFLMGLLTIFVEFLFIFLATNQNKVYDLQLE-VPIFEFEDRGCDRIASPV-TDSCIQQPLTEKAGFDSRAYLQICSTLSIALNPEGVASTLGNPNYGLVLFALLDTDGVDVTVMYRQINMTQSANIAVILEDGDV-YQGLMNVSAKSILSALSNRLRRSNATVLDAYAKDNITEDDSAYNLSITEQIGMPDTASVIVDLENLDLRETHASLSLYPNSSEVELNIAMV-LYLHDVARSIMFPTGRARGVKA-KDEVLYLDEVETPLAYYNRPWLGVLQSLIICGVLLLIWVFFEATRVKSDIDPRLAWKEFFRSTLTVED 457          
BLAST of Gcaud9902.t1 vs. uniprot
Match: A0A2V3J847_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J847_9FLOR)

HSP 1 Score: 302 bits (773), Expect = 1.280e-94
Identity = 195/465 (41.94%), Postives = 265/465 (56.99%), Query Frame = 0
Query:    1 MDKLSRNLSGEWYEI-YSCVQNGVGKFNVWDVRGFYDVKFDDPWNFNLSENAVSVITACLTSFSLILFNDIVTRLLVRARHGQVVNQQMISRRRVLDSFSNPVNLLSACIARVRKSPSDSPDHVGSRERTGSQGLSKKTYGFLIVMSVLIVFAEFLFIFLATNQNNVYHVRLDTVPTFEFEDRGCEFLDSPAQTNSCYQVPLTEKPGFDLRASLQICTSNTVYKPEAAAAPSDENHYFLFLLVANVDTVQVAVVGKYQTTLENTRISVGFEQGGLSYVGMKNVTAAQMLSALLHRMERTNVTILS----------------------------NSSDTSESIVSANVVVDASGVDLRKSHISSY-YPVELIPENTVALTHAYFHNVLRSIMFPTQEGRGVVTLPGELQYLDQDPTPVAYYNRPWVSVVFILIVCCALLLIWTVLAVLGVESEVDSHLAGANFVKN 435
            M++L RN S +     + C + G+ + + W VRGFY+ KF+DP NFNLSEN+VS+ITA  TSFSL+LFNDIV R LVRA+  +V N+ +I RR VL++FSNP+ L                          S   +K TY  L  M +L VFAEF+FIFLATNQN VY V+LD VP FEF+DRGCEF+  P   N+C QVPLTEKPGF+ R +LQIC+S  V++ + A   +D  H    +L  N   V   V  +  TT  N R+    E G + YVGM++ +A Q+ +ALLHR+ERTNVT+LS                              +  ++++V A V+ D   VDL ++ I S  +      E  V L H Y   ++RSIMFPT +GRGV        YLD+  +P+  YNRPW+ V   + +C  LLLIW  L  +G+ES++DS  A   F+++
Sbjct:    1 MEQLIRNTSSQLNSTDFFCSRPGLDEASQWSVRGFYENKFNDPLNFNLSENSVSLITAIATSFSLVLFNDIVFRALVRAKINEV-NKHVILRRHVLETFSNPLTLFLLXXXXXXXXXXXXXXXXXXXXXGSSSRKAKITYAALCAMGLLTVFAEFVFIFLATNQNGVYDVQLDGVPIFEFDDRGCEFVGPPTW-NACIQVPLTEKPGFNPRGALQICSS-VVFRGDNA---TDGQHDVHLILALNEYMVTATVNYREWTTSMNFRMGYMNESGAM-YVGMQSTSAEQIKAALLHRLERTNVTVLSAFPEENVARFGEDMESTKWGLRRPERTERQASQAQALV-AGVLGDVRLVDLNETTIGSVLFQDSSSEEERVHLMHQYLQALIRSIMFPTGKGRGVFFSEDSTLYLDEHTSPLVSYNRPWIGVAPSVAICSGLLLIWIALVAMGMESDMDSRWAWKEFMES 457          
BLAST of Gcaud9902.t1 vs. uniprot
Match: A0A2V3ICE5_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICE5_9FLOR)

HSP 1 Score: 212 bits (539), Expect = 5.200e-60
Identity = 146/440 (33.18%), Postives = 228/440 (51.82%), Query Frame = 0
Query:   14 EIYSCVQNGVGKFNVWDVRGFYDVKFDDPWNFNLSENAVSVITACLTSFSLILFNDIVTRLLVRARHGQVVNQQMISRRRVLDSFSNPVNLLSACIARVR-KSPSDSPDHVGSRERTGSQGLSKKTYGFLIVMSVLIVFAEFLFIFLATNQNNVYHVRLDTVPTFEFEDRGCEFLDSPAQTNSCYQVP-LTEKPGFDLRASLQICTSNTVYKPEAAAAPSDENHYFLFLLVANVDTVQVAVVGKYQTTLENTRISVGFEQGGLSYVGMKNVTAAQMLSALLHRMERTNVT-----ILSNSSDTSESIVSANV----VVDASGVDLRKSHISSYYPVELIPENTV-ALTHAYFHNVLRSIMFPTQEGRGVVTLPGELQYLDQDPTPVAYYNRPWVSVVFILIVCCALLLIWTVLAVLGVESEVDSHLAGANFVKNAETTGD 441
            E+  C  N     ++WDVRGFYD KF+DP NFNL EN VS++TA  TSFSL+LF DI+ R+ VRA++G+V +++++ RR ++D+ SNP+ L +  +  +R K P +     G +  +G     K TY  L+V+  + V  EF+FIFL+T Q  V+ V L TVP FEF+DRGCE +  P   N+C  +  + EK GF+ RA +Q CT  +    +      +    F+ L++  V  +   +           ++ V     G  +  M N    ++ + +  R+ R NVT     I++ SS TS      N+    ++D S +D+  + + +   V   P N    +   +    + S++ P+ + RG  +      YLD    P+AYY RP + VV  LI+C  L+++W V   LG+E  VDS  A   F  +     D
Sbjct:    2 ELSMCPGNRSNAADLWDVRGFYDDKFNDPMNFNLGENTVSILTAITTSFSLLLFVDIIFRVSVRAKNGEV-SKRVVLRRHIVDNCSNPITLCATVLRGIRTKRPWNRNQAFGPQLTSG-----KWTYASLVVLGFVAVCMEFIFIFLSTGQKKVFDVHLGTVPVFEFKDRGCESV-FPVPINTCNNMGGIAEKAGFESRAYIQACTGYSASLLKTGGKFGESGEAFISLIINRVVGITATLRDDATVFDMYNKVGVVMMDNGAFFSAMTNQGEEEVANVVSSRLNRANVTVRTWEIVNISSPTSTVDGGRNMALLFLLDISKLDVTGTSLWNAPGVSDGPWNDPHRVMPVFLMGAINSVIVPSGQARGEYSNEDRFFYLDMIEDPLAYYTRPRMGVVPSLIICGVLVVVWIVAVALGMEDGVDSRWAWKEFFSDTHHVED 434          
The following BLAST results are available for this feature:
BLAST of Gcaud9902.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IRV0_9FLOR9.310e-10042.46Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1Z3_9FLOR2.130e-9944.16Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J847_9FLOR1.280e-9441.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICE5_9FLOR5.200e-6033.18Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..160
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 418..444
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 161..393
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 394..417
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50
NoneNo IPR availableTMHMMTMhelixcoord: 138..160
NoneNo IPR availableTMHMMTMhelixcoord: 397..419

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_177_length_40581_cov_4.324031contigNODE_177_length_40581_cov_4.324031:33139..34473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9902.t1Gcaud9902.t1Gracilaria caudata M_176_S67 malemRNANODE_177_length_40581_cov_4.324031 33139..34473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9902.t1 ID=Gcaud9902.t1|Name=Gcaud9902.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=445bp
MDKLSRNLSGEWYEIYSCVQNGVGKFNVWDVRGFYDVKFDDPWNFNLSEN
AVSVITACLTSFSLILFNDIVTRLLVRARHGQVVNQQMISRRRVLDSFSN
PVNLLSACIARVRKSPSDSPDHVGSRERTGSQGLSKKTYGFLIVMSVLIV
FAEFLFIFLATNQNNVYHVRLDTVPTFEFEDRGCEFLDSPAQTNSCYQVP
LTEKPGFDLRASLQICTSNTVYKPEAAAAPSDENHYFLFLLVANVDTVQV
AVVGKYQTTLENTRISVGFEQGGLSYVGMKNVTAAQMLSALLHRMERTNV
TILSNSSDTSESIVSANVVVDASGVDLRKSHISSYYPVELIPENTVALTH
AYFHNVLRSIMFPTQEGRGVVTLPGELQYLDQDPTPVAYYNRPWVSVVFI
LIVCCALLLIWTVLAVLGVESEVDSHLAGANFVKNAETTGDDVD*
back to top