Gcaud990.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud990.t1
Unique NameGcaud990.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length228
Homology
BLAST of Gcaud990.t1 vs. uniprot
Match: A0A2V3J6K2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6K2_9FLOR)

HSP 1 Score: 199 bits (505), Expect = 1.090e-60
Identity = 104/176 (59.09%), Postives = 132/176 (75.00%), Query Frame = 0
Query:   51 RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLFADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRLLIAFFMVLIVSVVVGSVVVHRKGQQ 226
            RLTI D+ +GHIHYEADPA I+L+VT A YPQRTAF+LL+D RA+F+K ++  +S A T+ LSK ARP+F      Y      DKI+NV+ QVDQVK MM+ NI++AL+N +NLETLLDISD+MKN+A SFNRST +VK+RMQWKNL+M++LI         VV GS +V RK QQ
Sbjct:   52 RLTITDD-IGHIHYEADPAFIYLVVTAADYPQRTAFRLLADVRAQFDKSYSRQISHAKTSELSKTARPLFAEFADKYQDPAQFDKIANVEQQVDQVKGMMRDNIEAALKNTENLETLLDISDNMKNEASSFNRSTQDVKKRMQWKNLKMKILIXXXXXXXXGVVAGSFIVRRKRQQ 226          
BLAST of Gcaud990.t1 vs. uniprot
Match: R7QHV8_CHOCR (VAMP7b n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHV8_CHOCR)

HSP 1 Score: 163 bits (413), Expect = 8.860e-47
Identity = 81/151 (53.64%), Postives = 116/151 (76.82%), Query Frame = 0
Query:   51 RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLFADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRL 201
            RLTI D+ VG+IHY ADPAL++L++T  +YPQRTAF+LLS+ARAEFE+ F  +++      ++K A+P  +R++  Y      DKIS+V  QVDQVK +MQ NI++AL+N +NLETLLD SD+M+N+A +FNRST + K+RM+WK+L+M +
Sbjct:   52 RLTIADKDVGNIHYSADPALVYLVITATNYPQRTAFKLLSEARAEFEQEFKTELAGGKNDGVAKVAKPFLKRMMDRYEDVAREDKISSVALQVDQVKGLMQTNIQAALKNQENLETLLDSSDTMRNEASTFNRSTKDAKERMRWKSLKMNI 202          
BLAST of Gcaud990.t1 vs. uniprot
Match: A0A2V3J4P9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4P9_9FLOR)

HSP 1 Score: 147 bits (372), Expect = 1.180e-40
Identity = 75/173 (43.35%), Postives = 114/173 (65.90%), Query Frame = 0
Query:   51 RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLFADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRLLIAFFMVLIVSVVVGSVVVHRK 223
            RLTI D  VG IHY++DP  ++L+V    Y QRTAF+ L + R EF++ F  D++ A  +SLS+ A+ +  +L   Y HA N+DK+++V  QV++VK  MQ+NI+S L+N +N+ETLLD SD+MKN+A  F RS    K +M WKN +  + I   +++I + ++G +V   K
Sbjct:   55 RLTITDREVGSIHYDSDPVCLYLVVCARDYQQRTAFRFLGELRNEFDQTFRTDVAGARHSSLSRSAKQMLAQLCDKYNHARNVDKVASVTLQVEEVKGAMQNNIESVLRNQENIETLLDQSDTMKNEATGFQRSAHRAKDKMWWKNTKWTIAIILLVLIIAAAIIGGIVKATK 227          
BLAST of Gcaud990.t1 vs. uniprot
Match: R7Q3S3_CHOCR (VAMP7a n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3S3_CHOCR)

HSP 1 Score: 134 bits (337), Expect = 1.940e-35
Identity = 66/153 (43.14%), Postives = 100/153 (65.36%), Query Frame = 0
Query:   51 RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLFADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRLLI 203
            RLTI D  VG IHY++DP  ++L+V    Y QR AF+ L + R EF+  F +D+  A  + LS+ A+ +   L   Y    N+DK++ V  QV++VK +MQ+NI++ L+N +N+ETLLD +D+MKN+A  F RS    K +M WKN +M+++I
Sbjct:   55 RLTITDREVGSIHYDSDPVCLYLVVCAREYQQRNAFKFLGEVRREFDASFGNDVQTARQSGLSRPAKELLRSLCEKYNSVQNVDKVAAVSLQVEEVKGVMQNNIQNVLRNQENIETLLDQTDTMKNEATGFQRSANRAKDKMWWKNTKMQIII 207          
BLAST of Gcaud990.t1 vs. uniprot
Match: A0A7S2ZSD8_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZSD8_9RHOD)

HSP 1 Score: 132 bits (333), Expect = 1.110e-34
Identity = 70/168 (41.67%), Postives = 108/168 (64.29%), Query Frame = 0
Query:   51 RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLFADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRLLIAFFMVLIVSVVVGSV 218
            RLTI D+ VG IHY++ P  +FL++ D  YPQRTAF+ L+D    FE+ F ++  +    +LS  A+P+   L S+Y    N+DKI+ VQ QVD VK++MQ NI + LQN +NL  LLD SD+M+N+A +F+R+    K++  W+N+++ ++I   +       VG+V
Sbjct:   68 RLTITDKDVGSIHYDSGPDYLFLVICDREYPQRTAFKFLADLGQFFEERFGEEGLQCPPYALSGPAKPLLMDLCSEYNVVENVDKITGVQSQVDDVKNVMQSNISNVLQNQENLNVLLDKSDAMRNEANAFSRNAGSAKKKFWWQNVKLMIIIGVLVXXXXXXXVGAV 235          
BLAST of Gcaud990.t1 vs. uniprot
Match: A0A5J4YUM8_PORPP (Vesicle-associated membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUM8_PORPP)

HSP 1 Score: 120 bits (300), Expect = 1.980e-29
Identity = 58/141 (41.13%), Postives = 92/141 (65.25%), Query Frame = 0
Query:   51 RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLFADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQR 191
            RLT+ D  VG IH+E DP  +++ + D SYPQRTAFQLL++ R EF   F   +  A    ++K  + + +  +  Y  A N+D++  V++QVD+VK +M++NI+ AL N +NL+TL+D +D M+N+A +F RS+   K +
Sbjct:   50 RLTVTDRDVGTIHFECDPVCVYMTMCDPSYPQRTAFQLLTEFRDEFSAEFGPAVRGARDGEMNKSGKRMVKAFMETYDQARNVDQLEGVKYQVDEVKGVMENNIQQALNNQENLDTLVDKTDVMRNEASNFQRSSQAAKNK 190          
BLAST of Gcaud990.t1 vs. uniprot
Match: A0A7J7IET1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IET1_9RHOD)

HSP 1 Score: 112 bits (279), Expect = 1.530e-26
Identity = 62/157 (39.49%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   51 RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLF---ADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRLLIA 204
            RLTI ++ +G IHY+ D   ++++ + ASYPQR AFQ LS+ RAEF +     A+D++ A+   L+K  RP+   L + Y     LDK+S ++ QV++VK  MQ+NI+  ++N D+LE L   S+ ++ +A +F+RS   V+++  WKN +M  +IA
Sbjct:   70 RLTIEEKQLGMIHYDNDGTCMYVVFSRASYPQRLAFQFLSELRAEFLRTVGNRAEDVATASENGLTKLCRPLMSELCTLYDKPSGLDKMSRIRMQVEEVKGHMQNNIQEVMKNTDDLEQLQTQSEGLRGEASAFHRSAGTVERKYWWKNARMICVIA 226          
BLAST of Gcaud990.t1 vs. uniprot
Match: A0A7S0N7B5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N7B5_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 3.440e-19
Identity = 54/174 (31.03%), Postives = 107/174 (61.49%), Query Frame = 0
Query:   49 SHRLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDAR-AEFEKLFADDMSKATT-ASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRLLIAFFMVLIVSVVVGSVVV 220
            S    ++++ +G +H  A P  +   VT+ASYP+RTAFQ+L+  R A    L   +++++T   +L+   +P  + +   Y+   ++DKI+ V  +VD+V+ +M+ NI   L NA+NL ++ D ++S++ +A  F R + ++++ + W+NL+M++++     L+V+ +VG  VV
Sbjct:   46 SQLTVVINDEIGTLHLSAGPEDVLAAVTEASYPRRTAFQMLNALREAVNNNLTPQEIAESTEPGALNGTCKPWLKEVFQKYSALESVDKITAVGMKVDEVRAVMEGNINRVLDNAENLSSVEDKAESLRQNAQQFQRKSEDLRKVLWWRNLKMKMIVF----LLVASIVGYFVV 215          
BLAST of Gcaud990.t1 vs. uniprot
Match: A0A2V3J8L1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8L1_9FLOR)

HSP 1 Score: 80.1 bits (196), Expect = 1.720e-16
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:    1 MDSPFRQPDNKEMMAMLQANAALLTVYFGLIRATP-LLLDFGYAAYQHYS 49
            M+SPFRQPD KEMMAML+AN A+LTVYFGLIR TP  LLDFGYAAY+HYS
Sbjct:    1 MNSPFRQPDRKEMMAMLKANTAVLTVYFGLIRVTPPQLLDFGYAAYKHYS 50          
BLAST of Gcaud990.t1 vs. uniprot
Match: F0W8S1_9STRA (Uncharacterized protein AlNc14C36G3196 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8S1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-16
Identity = 47/157 (29.94%), Postives = 81/157 (51.59%), Query Frame = 0
Query:   70 LIFLLVTDASYPQRTAFQLLSDARAEFEKLFADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMMQHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMRLLIAFFMVLIVSVVVGSVVVHRKGQQ 226
            L+F ++T  SYP R AFQL+   + EF   FA          L K  + + + L + Y     +DKIS V HQVD VK +M  NI+  L N + +E +   ++ +   A  F  S  ++++ M WKN+++ + I    +L++ +++    V + G +
Sbjct:  119 LVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALNCREHGLDKECKSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLTIAIGLCAILVIVIILAVSGVFKSGSK 275          
The following BLAST results are available for this feature:
BLAST of Gcaud990.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6K2_9FLOR1.090e-6059.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHV8_CHOCR8.860e-4753.64VAMP7b n=1 Tax=Chondrus crispus TaxID=2769 RepID=R... [more]
A0A2V3J4P9_9FLOR1.180e-4043.35Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q3S3_CHOCR1.940e-3543.14VAMP7a n=1 Tax=Chondrus crispus TaxID=2769 RepID=R... [more]
A0A7S2ZSD8_9RHOD1.110e-3441.67Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YUM8_PORPP1.980e-2941.13Vesicle-associated membrane protein n=1 Tax=Porphy... [more]
A0A7J7IET1_9RHOD1.530e-2639.49Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S0N7B5_9CHLO3.440e-1931.03Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A2V3J8L1_9FLOR1.720e-1682.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
F0W8S1_9STRA1.900e-1629.94Uncharacterized protein AlNc14C36G3196 n=1 Tax=Alb... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableGENE3D1.20.5.110coord: 133..219
e-value: 1.9E-20
score: 74.3
NoneNo IPR availableGENE3D3.30.450.50Longin domaincoord: 42..132
e-value: 2.5E-11
score: 45.7
NoneNo IPR availablePANTHERPTHR21136SNARE PROTEINScoord: 61..216
NoneNo IPR availablePANTHERPTHR21136:SF168VESICLE-ASSOCIATED MEMBRANE PROTEIN 9coord: 61..216
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 43..200
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 221..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 201..220
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..42
NoneNo IPR availableCDDcd15843R-SNAREcoord: 134..192
e-value: 1.22059E-15
score: 66.7567
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 131..196
NoneNo IPR availableTMHMMTMhelixcoord: 201..220
NoneNo IPR availableTMHMMTMhelixcoord: 23..45
IPR001388SynaptobrevinPRINTSPR00219SYNAPTOBREVNcoord: 140..159
score: 39.32
coord: 196..215
score: 21.22
coord: 160..179
score: 23.11
IPR042855v-SNARE, coiled-coil homology domainPFAMPF00957Synaptobrevincoord: 134..218
e-value: 1.0E-20
score: 73.3
IPR042855v-SNARE, coiled-coil homology domainPROSITEPS50892V_SNAREcoord: 135..195
score: 12.909598
IPR010908Longin domainPFAMPF13774Longincoord: 49..106
e-value: 6.4E-10
score: 38.9
IPR010908Longin domainPROSITEPS50859LONGINcoord: 56..124
score: 13.262127
IPR010908Longin domainCDDcd14824Longincoord: 46..127
e-value: 1.98223E-12
score: 59.9621
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 53..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_458_length_24831_cov_4.365562contigNODE_458_length_24831_cov_4.365562:3036..4422 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud990.t1Gcaud990.t1Gracilaria caudata M_176_S67 malemRNANODE_458_length_24831_cov_4.365562 3036..4422 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud990.t1 ID=Gcaud990.t1|Name=Gcaud990.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MDSPFRQPDNKEMMAMLQANAALLTVYFGLIRATPLLLDFGYAAYQHYSH
RLTIVDEHVGHIHYEADPALIFLLVTDASYPQRTAFQLLSDARAEFEKLF
ADDMSKATTASLSKRARPVFERLLSDYAHAPNLDKISNVQHQVDQVKDMM
QHNIKSALQNADNLETLLDISDSMKNDAYSFNRSTTEVKQRMQWKNLQMR
LLIAFFMVLIVSVVVGSVVVHRKGQQT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR042855V_SNARE_CC
IPR010908Longin_dom
IPR011012Longin-like_dom_sf