Gcaud9896.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9896.t2
Unique NameGcaud9896.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length111
Homology
BLAST of Gcaud9896.t2 vs. uniprot
Match: R7QJK1_CHOCR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJK1_CHOCR)

HSP 1 Score: 106 bits (264), Expect = 2.690e-26
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 107
            +GI  EWLIYY+TL YVD+ +L++V LPN +NFAFDFGIWNRIVL++Y+YFG FMF HM++QR+KKL +
Sbjct:  151 IGIVCEWLIYYFTLEYVDSQELFAVRLPNAWNFAFDFGIWNRIVLLMYLYFGVFMFTHMVQQRKKKLPA 219          
BLAST of Gcaud9896.t2 vs. uniprot
Match: A0A2V3ISN4_9FLOR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISN4_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 5.610e-12
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    1 MYEAAAPFAMTAQSLAWLEVIHAMLGFGGTVPTAFVQCLG 40
            +YEA A  A+TAQ+LAW EV+HAMLGFGGTVPTA VQCLG
Sbjct:   38 VYEAVAAIALTAQTLAWAEVVHAMLGFGGTVPTAVVQCLG 77          
BLAST of Gcaud9896.t2 vs. uniprot
Match: UPI001560DC6B (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like isoform X2 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI001560DC6B)

HSP 1 Score: 65.9 bits (159), Expect = 1.130e-10
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 107
            +G+T E L  Y  L YV    LYSV+LPNK+NF+FD+  +  +V+V Y+   P ++ HM+RQR+K LAS
Sbjct:  163 MGVTGELLTIYAALPYVQKTGLYSVTLPNKYNFSFDYYTFLILVMVSYIPLFPQLYFHMMRQRKKVLAS 231          
BLAST of Gcaud9896.t2 vs. uniprot
Match: UPI001B7EDE6F (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7EDE6F)

HSP 1 Score: 65.9 bits (159), Expect = 1.210e-10
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 107
            +G+T E L  Y  L YV    LYSV+LPNK+NF+FD+  +  +V+V Y+   P ++ HM+RQR+K LAS
Sbjct:  169 MGVTGELLTIYAALPYVQKTGLYSVTLPNKYNFSFDYYTFLILVMVSYIPLFPQLYFHMMRQRKKVLAS 237          
BLAST of Gcaud9896.t2 vs. uniprot
Match: A0A2S2QUT3_9HEMI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QUT3_9HEMI)

HSP 1 Score: 64.3 bits (155), Expect = 4.510e-10
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFG--PFMFLHMLRQRRKKLAS 107
            LG+T E L+Y+ +L Y+   K++S+ LPN+FNFAF   +W  I L++  Y    P M++HM+ QR+K L S
Sbjct:  155 LGVTGELLVYWTSLGYIGRSKMWSIELPNRFNFAFS--LWTAITLIMLSYIPLFPQMYMHMVYQRKKTLGS 223          
BLAST of Gcaud9896.t2 vs. uniprot
Match: A0A2B4RGH7_STYPI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RGH7_STYPI)

HSP 1 Score: 63.9 bits (154), Expect = 6.530e-10
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   35 FVQCLGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLASEAR 110
            F+  +G+T E +  Y +L YV    LYSVS+PN+ NF+FDF ++  +V+  Y+   P ++ HM+RQR+K +  + +
Sbjct:  141 FLYPIGVTGELVTIYSSLGYVSKSGLYSVSMPNRLNFSFDFHLFLMVVMFSYIPIFPQLYFHMIRQRKKVIGGKVK 216          
BLAST of Gcaud9896.t2 vs. uniprot
Match: A0A6I8PHZ0_ORNAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Monotremata TaxID=9255 RepID=A0A6I8PHZ0_ORNAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.340e-9
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLA 106
            +G+T E L  Y  L +V    LYSVSLPNK+NF+FD+  +  +V+  Y+   P ++ HMLRQRRK LA
Sbjct:  180 MGVTGELLTIYAALPFVRRAGLYSVSLPNKYNFSFDYHAFLILVMFSYIPLFPQLYFHMLRQRRKLLA 247          
BLAST of Gcaud9896.t2 vs. uniprot
Match: A0A8D0HCV5_SPHPU (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0HCV5_SPHPU)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-9
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 107
            +G++ E L  Y  L +V    LYS+SLPNK+NF+FDF     + ++ Y+ F P ++ HML QRRK  AS
Sbjct:   67 MGVSGELLTIYAALPFVRQSGLYSISLPNKYNFSFDFYTSLIVTMLAYIPFFPQLYFHMLHQRRKIFAS 135          
BLAST of Gcaud9896.t2 vs. uniprot
Match: A0A8J6E9P1_ELECQ (Uncharacterized protein n=3 Tax=Hyloidea TaxID=8417 RepID=A0A8J6E9P1_ELECQ)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-9
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLASE 108
            +G+  E L  Y  L YV    LYS+SLPNK+NF+FD+  +  +V+V Y+   P ++ HML QRRK L +E
Sbjct:  189 MGVAGELLTIYAALPYVQQTGLYSISLPNKYNFSFDYYTFLILVMVSYIPIFPQLYFHMLHQRRKVLHNE 258          
BLAST of Gcaud9896.t2 vs. uniprot
Match: A0A3B3UKV6_9TELE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3UKV6_9TELE)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-9
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   39 LGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKL 105
            +G++ E L  Y  L YV    LYSV+LPNK+NF+FD+  +  +V++ Y+   P ++ HM+RQR+K L
Sbjct:   21 MGVSGELLTIYAALPYVQKTGLYSVTLPNKYNFSFDYYSFLILVMISYIPLFPQLYFHMMRQRKKVL 87          
The following BLAST results are available for this feature:
BLAST of Gcaud9896.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QJK1_CHOCR2.690e-2666.67Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2V3ISN4_9FLOR5.610e-1277.50Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI001560DC6B1.130e-1047.83very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI001B7EDE6F1.210e-1047.83very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2S2QUT3_9HEMI4.510e-1043.66Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2B4RGH7_STYPI6.530e-1038.16Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6I8PHZ0_ORNAN1.340e-948.53Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A8D0HCV5_SPHPU1.420e-944.93Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A8J6E9P1_ELECQ1.420e-945.71Uncharacterized protein n=3 Tax=Hyloidea TaxID=841... [more]
A0A3B3UKV6_9TELE1.440e-943.28Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007482Protein-tyrosine phosphatase-like, PTPLAPFAMPF04387PTPLAcoord: 39..106
e-value: 4.4E-12
score: 46.0
IPR007482Protein-tyrosine phosphatase-like, PTPLAPANTHERPTHR11035PTPLA DOMAIN PROTEINcoord: 39..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 56..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 96..110
NoneNo IPR availableTMHMMTMhelixcoord: 76..98
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_177_length_40581_cov_4.324031contigNODE_177_length_40581_cov_4.324031:13729..14259 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9896.t2Gcaud9896.t2Gracilaria caudata M_176_S67 malemRNANODE_177_length_40581_cov_4.324031 13729..14259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9896.t2 ID=Gcaud9896.t2|Name=Gcaud9896.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=111bp
MYEAAAPFAMTAQSLAWLEVIHAMLGFGGTVPTAFVQCLGITAEWLIYYW
TLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQ
RRKKLASEAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA