Gcaud9896.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9896.t1
Unique NameGcaud9896.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length128
Homology
BLAST of Gcaud9896.t1 vs. uniprot
Match: R7QJK1_CHOCR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJK1_CHOCR)

HSP 1 Score: 139 bits (350), Expect = 5.970e-39
Identity = 78/168 (46.43%), Postives = 98/168 (58.33%), Query Frame = 0
Query:    7 PFAMTAQSLAWLEVIHAMLGF-GGTVPTAFVQCLGRFVVLVFVVDNVADIQ-------------------------------------------------GITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 124
            P+A   QSLAWLEV+HA  G  GG V TAFVQCLGR+VVLV+VV+ +A +                                                  GI  EWLIYY+TL YVD+ +L++V LPN +NFAFDFGIWNRIVL++Y+YFG FMF HM++QR+KKL +
Sbjct:   52 PYAHRGQSLAWLEVMHAAFGLAGGGVATAFVQCLGRYVVLVYVVEPIAFMHSAWVTTIMLFAWALADVVRYLFYIQSYLSRPWQTVLWLRYSLFLILYPIGIVCEWLIYYFTLEYVDSQELFAVRLPNAWNFAFDFGIWNRIVLLMYLYFGVFMFTHMVQQRKKKLPA 219          
BLAST of Gcaud9896.t1 vs. uniprot
Match: A0A2V3ISN4_9FLOR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISN4_9FLOR)

HSP 1 Score: 94.4 bits (233), Expect = 1.830e-21
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 0
Query:    1 MYEAAAPFAMTAQSLAWLEVIHAMLGFGGTVPTAFVQCLGRFVVLVFVVDNVADIQG-ITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMY 105
            +YEA A  A+TAQ+LAW EV+HAMLGFGGTVPTA VQCLGRFVVL+ VVD + DIQG I   +L+  W++  +  +  Y   + ++        +W R  L L +Y
Sbjct:   38 VYEAVAAIALTAQTLAWAEVVHAMLGFGGTVPTAVVQCLGRFVVLMLVVDRIDDIQGHIVTLFLLMAWSVGDIVRYAFYIAIITHRVPKVL---LWMRYSLFLVLY 140          
BLAST of Gcaud9896.t1 vs. uniprot
Match: UPI001560DC6B (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like isoform X2 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI001560DC6B)

HSP 1 Score: 64.7 bits (156), Expect = 5.250e-10
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 0
Query:   56 QGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 124
             G+T E L  Y  L YV    LYSV+LPNK+NF+FD+  +  +V+V Y+   P ++ HM+RQR+K LAS
Sbjct:  163 MGVTGELLTIYAALPYVQKTGLYSVTLPNKYNFSFDYYTFLILVMVSYIPLFPQLYFHMMRQRKKVLAS 231          
BLAST of Gcaud9896.t1 vs. uniprot
Match: UPI001B7EDE6F (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7EDE6F)

HSP 1 Score: 64.7 bits (156), Expect = 5.600e-10
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 0
Query:   56 QGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 124
             G+T E L  Y  L YV    LYSV+LPNK+NF+FD+  +  +V+V Y+   P ++ HM+RQR+K LAS
Sbjct:  169 MGVTGELLTIYAALPYVQKTGLYSVTLPNKYNFSFDYYTFLILVMVSYIPLFPQLYFHMMRQRKKVLAS 237          
BLAST of Gcaud9896.t1 vs. uniprot
Match: A0A2S2QUT3_9HEMI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QUT3_9HEMI)

HSP 1 Score: 62.0 bits (149), Expect = 5.540e-9
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 0
Query:   57 GITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFG--PFMFLHMLRQRRKKLAS 124
            G+T E L+Y+ +L Y+   K++S+ LPN+FNFAF   +W  I L++  Y    P M++HM+ QR+K L S
Sbjct:  156 GVTGELLVYWTSLGYIGRSKMWSIELPNRFNFAFS--LWTAITLIMLSYIPLFPQMYMHMVYQRKKTLGS 223          
BLAST of Gcaud9896.t1 vs. uniprot
Match: A0A6I8PHZ0_ORNAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Monotremata TaxID=9255 RepID=A0A6I8PHZ0_ORNAN)

HSP 1 Score: 62.0 bits (149), Expect = 6.120e-9
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0
Query:   56 QGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLA 123
             G+T E L  Y  L +V    LYSVSLPNK+NF+FD+  +  +V+  Y+   P ++ HMLRQRRK LA
Sbjct:  180 MGVTGELLTIYAALPFVRRAGLYSVSLPNKYNFSFDYHAFLILVMFSYIPLFPQLYFHMLRQRRKLLA 247          
BLAST of Gcaud9896.t1 vs. uniprot
Match: A0A8J6E9P1_ELECQ (Uncharacterized protein n=3 Tax=Hyloidea TaxID=8417 RepID=A0A8J6E9P1_ELECQ)

HSP 1 Score: 62.0 bits (149), Expect = 6.470e-9
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0
Query:   56 QGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLASE 125
             G+  E L  Y  L YV    LYS+SLPNK+NF+FD+  +  +V+V Y+   P ++ HML QRRK L +E
Sbjct:  189 MGVAGELLTIYAALPYVQQTGLYSISLPNKYNFSFDYYTFLILVMVSYIPIFPQLYFHMLHQRRKVLHNE 258          
BLAST of Gcaud9896.t1 vs. uniprot
Match: A0A8D0HCV5_SPHPU (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0HCV5_SPHPU)

HSP 1 Score: 60.1 bits (144), Expect = 6.670e-9
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 0
Query:   56 QGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKLAS 124
             G++ E L  Y  L +V    LYS+SLPNK+NF+FDF     + ++ Y+ F P ++ HML QRRK  AS
Sbjct:   67 MGVSGELLTIYAALPFVRQSGLYSISLPNKYNFSFDFYTSLIVTMLAYIPFFPQLYFHMLHQRRKIFAS 135          
BLAST of Gcaud9896.t1 vs. uniprot
Match: A0A3B3UKV6_9TELE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3UKV6_9TELE)

HSP 1 Score: 58.9 bits (141), Expect = 6.790e-9
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   56 QGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKL 122
             G++ E L  Y  L YV    LYSV+LPNK+NF+FD+  +  +V++ Y+   P ++ HM+RQR+K L
Sbjct:   21 MGVSGELLTIYAALPYVQKTGLYSVTLPNKYNFSFDYYSFLILVMISYIPLFPQLYFHMMRQRKKVL 87          
BLAST of Gcaud9896.t1 vs. uniprot
Match: A0A6P8UYA5_GYMAC (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6P8UYA5_GYMAC)

HSP 1 Score: 59.7 bits (143), Expect = 7.500e-9
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   56 QGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVLVLYMYFGPFMFLHMLRQRRKKL 122
             G+T E L  Y  L +V    LYS++LPNK+NF+FD+  +  IV++ Y+   P ++ HM+RQR+K L
Sbjct:   56 MGVTGELLTIYAALPFVQKTGLYSITLPNKYNFSFDYHSFLIIVMISYIPLFPQLYFHMIRQRKKVL 122          
The following BLAST results are available for this feature:
BLAST of Gcaud9896.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QJK1_CHOCR5.970e-3946.43Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2V3ISN4_9FLOR1.830e-2149.06Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI001560DC6B5.250e-1047.83very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI001B7EDE6F5.600e-1047.83very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2S2QUT3_9HEMI5.540e-942.86Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6I8PHZ0_ORNAN6.120e-948.53Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A8J6E9P1_ELECQ6.470e-945.71Uncharacterized protein n=3 Tax=Hyloidea TaxID=841... [more]
A0A8D0HCV5_SPHPU6.670e-944.93Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A3B3UKV6_9TELE6.790e-943.28Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6P8UYA5_GYMAC7.500e-943.28Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007482Protein-tyrosine phosphatase-like, PTPLAPFAMPF04387PTPLAcoord: 57..123
e-value: 2.2E-11
score: 43.7
coord: 13..54
e-value: 6.3E-5
score: 22.7
IPR007482Protein-tyrosine phosphatase-like, PTPLAPANTHERPTHR11035PTPLA DOMAIN PROTEINcoord: 2..56
coord: 57..124
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 113..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..112
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 69..87
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..35
NoneNo IPR availableTMHMMTMhelixcoord: 15..36
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
NoneNo IPR availableTMHMMTMhelixcoord: 43..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_177_length_40581_cov_4.324031contigNODE_177_length_40581_cov_4.324031:13729..14259 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9896.t1Gcaud9896.t1Gracilaria caudata M_176_S67 malemRNANODE_177_length_40581_cov_4.324031 13729..14259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9896.t1 ID=Gcaud9896.t1|Name=Gcaud9896.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=128bp
MYEAAAPFAMTAQSLAWLEVIHAMLGFGGTVPTAFVQCLGRFVVLVFVVD
NVADIQGITAEWLIYYWTLSYVDTHKLYSVSLPNKFNFAFDFGIWNRIVL
VLYMYFGPFMFLHMLRQRRKKLASEAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA