Gcaud9889.t3 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9889.t3
Unique NameGcaud9889.t3
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length88
Homology
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A5J4YQH3_PORPP (Succinate dehydrogenase assembly factor 2, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQH3_PORPP)

HSP 1 Score: 75.9 bits (185), Expect = 1.830e-15
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 0
Query:    4 RIIYRSKQRGWLELDILFGNWAVKYVP-------------TMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNE-IMDSLRDYASGDGHVNDR 87
            R +YRSKQRGWLE+D++ G W   ++               + D+  +   E +LDA+TPD+ KWV  QQEPP       +  S++++A G G+++ R
Sbjct:   59 RALYRSKQRGWLEMDVILGRWTSLHMQRLLESQKPGAPPSVLGDEQGMAQLERILDAETPDIFKWVTGQQEPPADVGGSTVFQSIQEFAFGAGNISTR 156          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A7S0SLU4_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SLU4_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 9.990e-14
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    4 RIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQN 68
            R++YR+KQRG+LELDI+ G WA +++PT  D   LT   D+LD + PD+ KW+  Q+ PP R  N
Sbjct:   98 RLLYRAKQRGFLELDIIIGEWAERHLPTHGD-AFLTSFSDVLDEENPDLFKWLTGQEFPPPRVAN 161          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A7S0YS29_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YS29_9CRYP)

HSP 1 Score: 69.3 bits (168), Expect = 8.190e-13
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    5 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 78
            ++YRS+Q GWLE D++ G WA   +  +S D QL    DL + +  D+ KW+++Q   P +  NE+M  L++YA
Sbjct:   78 LVYRSRQTGWLETDLIMGRWAQLNIDQLSLD-QLKQLSDLCEEEILDIFKWIVKQAPTPEKHDNEVMHMLQEYA 150          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A7S0DMG9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DMG9_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.690e-12
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 0
Query:    4 RIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 78
            + ++R +QRGW+E+D+L GNWA + +P MSD  QL   E ++  + P +L W+L  ++ P     + M S+R+Y 
Sbjct:   69 KALWRCRQRGWVEIDLLMGNWAAENIPAMSDK-QLGELEVIIAQENPSLLNWLLGHEDVPEELDTKTMRSMRNYV 142          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A5A8EJ79_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJ79_CAFRO)

HSP 1 Score: 67.8 bits (164), Expect = 2.640e-12
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    4 RIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 78
            R++YR++QRGWLE+D++ G +A   VP M D+ +L   ED+L  DT DV  WVL ++  P   ++ +  SL ++A
Sbjct:   65 RLVYRARQRGWLEVDLILGTFAHARVPAM-DERELDEFEDVLRLDTADVYNWVLGREPIPAERESSVFRSLIEFA 138          
BLAST of Gcaud9889.t3 vs. uniprot
Match: C1MKK9_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MKK9_MICPC)

HSP 1 Score: 67.8 bits (164), Expect = 3.480e-12
Identity = 28/70 (40.00%), Postives = 48/70 (68.57%), Query Frame = 0
Query:    1 MYGRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEI 70
            ++ R++YR+KQRG+LELDIL G WA +++   S++   + +E +LD + P++ KW+  Q+ PP R  N +
Sbjct:   64 LFNRLLYRAKQRGFLELDILVGKWAQRHLINRSEEFMASFSE-VLDEENPELFKWLTGQEYPPSRLANNL 132          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A7S1DR90_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DR90_HEMAN)

HSP 1 Score: 67.8 bits (164), Expect = 3.540e-12
Identity = 27/74 (36.49%), Postives = 47/74 (63.51%), Query Frame = 0
Query:    5 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 78
            ++YRS+Q GWLE D++ G WAV  +  +S D +L    +L + +  D+ KW+++Q   P +  N++M  L++YA
Sbjct:   83 LVYRSRQTGWLETDLIMGRWAVANIDKLSLD-ELKQLSNLCEEEILDIFKWIVKQAPTPEKHDNDVMRQLQEYA 155          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A7S2W353_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W353_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.590e-12
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    4 RIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYAS 79
            R++YR++QRGWLE+D+L G+WA   +   SD+ ++   E +L+ +T D+   V +Q E P   Q E+M  L++YA+
Sbjct:  100 RLVYRARQRGWLEVDLLLGSWAADNIMDCSDE-EVAQFEAILNCETLDIYNMVTKQMEIPDVLQTEMMTRLQEYAA 174          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A6A3ZJU5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZJU5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.080e-12
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 0
Query:    4 RIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 78
            R+ YRSKQRGWLE+D+L G WA + V  +S D +L   ED+L+ +T D+  ++  + + P R    +M  L+D+ 
Sbjct:   81 RVTYRSKQRGWLEVDLLLGRWASQNVMQLSRD-ELQQYEDILNEETIDIFNYISGKSQVPARLDTPMMKRLQDFC 154          
BLAST of Gcaud9889.t3 vs. uniprot
Match: A0A1J6IV43_NICAT (Succinate dehydrogenase assembly factor 2, mitochondrial (Fragment) n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IV43_NICAT)

HSP 1 Score: 66.6 bits (161), Expect = 6.040e-12
Identity = 30/88 (34.09%), Postives = 55/88 (62.50%), Query Frame = 0
Query:    1 MYGRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRF---------QNEIMDSLRDYAS 79
            ++ R+ YRSKQRG+LELD++ G W   ++ +M +DG  ++  ++LD + PD+ KW+  Q++PP            Q ++M++L  +A+
Sbjct:   34 LFNRLRYRSKQRGFLELDLVIGKWVEDHIQSMDEDGIKSLV-NVLDLENPDLWKWLTGQEQPPDAISTNSVFSAVQEKVMNNLGKHAA 120          
The following BLAST results are available for this feature:
BLAST of Gcaud9889.t3 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4YQH3_PORPP1.830e-1535.71Succinate dehydrogenase assembly factor 2, mitocho... [more]
A0A7S0SLU4_9CHLO9.990e-1449.23Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S0YS29_9CRYP8.190e-1339.19Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0DMG9_9EUKA1.690e-1237.33Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A5A8EJ79_CAFRO2.640e-1241.33Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
C1MKK9_MICPC3.480e-1240.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S1DR90_HEMAN3.540e-1236.49Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S2W353_9STRA3.590e-1239.47Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6A3ZJU5_9STRA5.080e-1240.00Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A1J6IV43_NICAT6.040e-1234.09Succinate dehydrogenase assembly factor 2, mitocho... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036714Flavinator of succinate dehydrogenase superfamilyGENE3D1.10.150.250Flavinator of succinate dehydrogenasecoord: 1..83
e-value: 2.3E-19
score: 71.2
IPR036714Flavinator of succinate dehydrogenase superfamilySUPERFAMILY109910YgfY-likecoord: 4..76
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 4..77
e-value: 1.9E-17
score: 63.0
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 4..79
NoneNo IPR availablePANTHERPTHR12469:SF2SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 2, MITOCHONDRIALcoord: 4..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_428_length_25911_cov_4.217002contigNODE_428_length_25911_cov_4.217002:23312..23802 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t3Gcaud9889.t3Gracilaria caudata M_176_S67 malemRNANODE_428_length_25911_cov_4.217002 23312..23802 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9889.t3 ID=Gcaud9889.t3|Name=Gcaud9889.t3|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=88bp
MYGRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTP
DVLKWVLRQQEPPVRFQNEIMDSLRDYASGDGHVNDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036714SDH_sf
IPR005631SDH