Gcaud9889.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9889.t1
Unique NameGcaud9889.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length87
Homology
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A5J4YQH3_PORPP (Succinate dehydrogenase assembly factor 2, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQH3_PORPP)

HSP 1 Score: 74.7 bits (182), Expect = 4.960e-15
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 0
Query:    5 IYRSKQRGWLELDILFGNWAVKYVP-------------TMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNE-IMDSLRDYASGDGHVNDR 86
            +YRSKQRGWLE+D++ G W   ++               + D+  +   E +LDA+TPD+ KWV  QQEPP       +  S++++A G G+++ R
Sbjct:   61 LYRSKQRGWLEMDVILGRWTSLHMQRLLESQKPGAPPSVLGDEQGMAQLERILDAETPDIFKWVTGQQEPPADVGGSTVFQSIQEFAFGAGNISTR 156          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A7S0SLU4_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SLU4_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 3.740e-13
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQN 67
            ++YR+KQRG+LELDI+ G WA +++PT  D   LT   D+LD + PD+ KW+  Q+ PP R  N
Sbjct:   99 LLYRAKQRGFLELDIIIGEWAERHLPTHGD-AFLTSFSDVLDEENPDLFKWLTGQEFPPPRVAN 161          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A7S0YS29_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YS29_9CRYP)

HSP 1 Score: 69.7 bits (169), Expect = 5.600e-13
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 77
            ++YRS+Q GWLE D++ G WA   +  +S D QL    DL + +  D+ KW+++Q   P +  NE+M  L++YA
Sbjct:   78 LVYRSRQTGWLETDLIMGRWAQLNIDQLSLD-QLKQLSDLCEEEILDIFKWIVKQAPTPEKHDNEVMHMLQEYA 150          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A7S0DMG9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DMG9_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.630e-12
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 0
Query:    5 IYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 77
            ++R +QRGW+E+D+L GNWA + +P MSD  QL   E ++  + P +L W+L  ++ P     + M S+R+Y 
Sbjct:   71 LWRCRQRGWVEIDLLMGNWAAENIPAMSDK-QLGELEVIIAQENPSLLNWLLGHEDVPEELDTKTMRSMRNYV 142          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A7S3M994_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M994_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.070e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQN-EIMDSLRDYA 77
            +IYRSKQRGWLE DIL G+WAV++VPT+S   QL   E +L+ +T D+  ++  +   P R ++  +M  L+ YA
Sbjct:   91 MIYRSKQRGWLEADILMGSWAVEFVPTLSH-AQLDEYETILNEETIDIFNYITGKDALPDRLKDLSLMKDLQAYA 164          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A7S1DR90_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DR90_HEMAN)

HSP 1 Score: 68.2 bits (165), Expect = 2.420e-12
Identity = 27/74 (36.49%), Postives = 47/74 (63.51%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 77
            ++YRS+Q GWLE D++ G WAV  +  +S D +L    +L + +  D+ KW+++Q   P +  N++M  L++YA
Sbjct:   83 LVYRSRQTGWLETDLIMGRWAVANIDKLSLD-ELKQLSNLCEEEILDIFKWIVKQAPTPEKHDNDVMRQLQEYA 155          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A5A8EJ79_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJ79_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-11
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 77
            ++YR++QRGWLE+D++ G +A   VP M D+ +L   ED+L  DT DV  WVL ++  P   ++ +  SL ++A
Sbjct:   66 LVYRARQRGWLEVDLILGTFAHARVPAM-DERELDEFEDVLRLDTADVYNWVLGREPIPAERESSVFRSLIEFA 138          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A7S2W353_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W353_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.340e-11
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYAS 78
            ++YR++QRGWLE+D+L G+WA   +   SD+ ++   E +L+ +T D+   V +Q E P   Q E+M  L++YA+
Sbjct:  101 LVYRARQRGWLEVDLLLGSWAADNIMDCSDE-EVAQFEAILNCETLDIYNMVTKQMEIPDVLQTEMMTRLQEYAA 174          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A6A3ZJU5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZJU5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.920e-11
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 77
            + YRSKQRGWLE+D+L G WA + V  +S D +L   ED+L+ +T D+  ++  + + P R    +M  L+D+ 
Sbjct:   82 VTYRSKQRGWLEVDLLLGRWASQNVMQLSRD-ELQQYEDILNEETIDIFNYISGKSQVPARLDTPMMKRLQDFC 154          
BLAST of Gcaud9889.t1 vs. uniprot
Match: A0A7S0PYQ7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYQ7_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 2.030e-11
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0
Query:    4 IIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQN--EIMDSLRDYASGD 80
            I+YR KQRG LELD+L G WA + +  + DD QL   E+L   +TP V+KWV+ Q+E P        ++  L+ Y   D
Sbjct:   28 ILYRCKQRGLLELDLLMGTWAEENIRQL-DDEQLNDLEELAKEETPIVMKWVMGQEEAPEHLDKPGSVLRQLKAYTHED 105          
The following BLAST results are available for this feature:
BLAST of Gcaud9889.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4YQH3_PORPP4.960e-1535.42Succinate dehydrogenase assembly factor 2, mitocho... [more]
A0A7S0SLU4_9CHLO3.740e-1348.44Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S0YS29_9CRYP5.600e-1339.19Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0DMG9_9EUKA1.630e-1238.36Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3M994_9STRA2.070e-1245.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1DR90_HEMAN2.420e-1236.49Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A5A8EJ79_CAFRO1.010e-1140.54Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S2W353_9STRA1.340e-1138.67Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6A3ZJU5_9STRA1.920e-1139.19Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7S0PYQ7_9EUKA2.030e-1141.77Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 4..76
e-value: 1.5E-16
score: 60.1
IPR036714Flavinator of succinate dehydrogenase superfamilyGENE3D1.10.150.250Flavinator of succinate dehydrogenasecoord: 3..82
e-value: 2.7E-18
score: 67.7
IPR036714Flavinator of succinate dehydrogenase superfamilySUPERFAMILY109910YgfY-likecoord: 4..75
NoneNo IPR availablePANTHERPTHR12469:SF2SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 2, MITOCHONDRIALcoord: 4..78
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 4..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_428_length_25911_cov_4.217002contigNODE_428_length_25911_cov_4.217002:23312..23802 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t1Gcaud9889.t1Gracilaria caudata M_176_S67 malemRNANODE_428_length_25911_cov_4.217002 23312..23802 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9889.t1 ID=Gcaud9889.t1|Name=Gcaud9889.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=87bp
MYGIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPD
VLKWVLRQQEPPVRFQNEIMDSLRDYASGDGHVNDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
IPR036714SDH_sf