Gcaud9880.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9880.t1
Unique Name	Gcaud9880.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	347

Homology

[Close]

BLAST of Gcaud9880.t1 vs. uniprot
Match: A0A2V3ITB0_9FLOR (MSC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITB0_9FLOR)

HSP 1 Score: 140 bits (353), Expect = 3.700e-33
Identity = 114/320 (35.62%), Postives = 168/320 (52.50%), Query Frame = 0

Query:   44 SSWVEPSLLAQLREPSL---------PNTKEKPVSRPSSRARSSSVA---DAAQRTFETHDSDDIRKGSAPSTARRATLRSEGRRPTTXXXXXXTR--QRDISEVSTKPSVRDQSFFNIDENYVSDEDPDXXXXXXXXXXXXXXXXXXQEHDKPVQVVDLTYDSSLNEQKQTLLDG--EDDIQPFHGHESHREHKDVRQEDIPFDSDAYESDRAHHSDRGSIVDTEDEEQLLDFTQWSTKDIRDWLRAHNVRFANLVSKEELIGLVRAKVLQMETMDEEEVPPKNQQYAEAPQRDEKPDVRRRRGISVPSVADEDDEVVF 347
            S+WV+PSLLAQL+ P+           +T+E+  +R S R   S  A   D   R         +     P      ++R+ G           TR  + ++S  S   + + +   ++DE Y+S+EDPD     XXXXXXX      +E  + V++VDLT+D++L   ++T  D   +D+IQP        +     QEDIPFDSD +ESDRA  SD  S V+TE+E+ ++DF +W +KDIRDWL AH+++F    SK EL+GL RA  ++MET  + +     ++  E           RR+GIS P    EDD+VVF
Sbjct:  130 SNWVDPSLLAQLKAPTPRKPQQESAEASTEEQNKTRSSVRHPGSYRATELDVGLRNRHQQRRPTLVFEEPPPQPSGRSIRTSGASTRQRSSANETRNARTELSSSSVGRTSQPRRLLDVDEEYISEEDPDYEADQXXXXXXXSDESDYEEWKRSVEIVDLTHDAAL---RKTEFDESLDDEIQPASQSRKRGQRSWTHQEDIPFDSDTHESDRARRSDPSSAVETEEEDDIIDFNEWRSKDIRDWLHAHDIKFNPTASKVELVGLARAIKIRMETAFDVDDQSDTEEMKE-----------RRQGISAPR---EDDDVVF 432

The following BLAST results are available for this feature:

BLAST of Gcaud9880.t1 vs. uniprot

BLAST of Gcaud9880.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3ITB0_9FLOR	3.700e-33	35.63	MSC domain-containing protein n=1 Tax=Gracilariops...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_428_length_25911_cov_4.217002	contig	NODE_428_length_25911_cov_4.217002:125..1165 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9880.t1	Gcaud9880.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_428_length_25911_cov_4.217002 125..1165 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9880.t1 ID=Gcaud9880.t1|Name=Gcaud9880.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MNQAPTSSSRARQPSAARVSAAEEERREATTDTAAGTRQRRRSSSWVEPS
LLAQLREPSLPNTKEKPVSRPSSRARSSSVADAAQRTFETHDSDDIRKGS
APSTARRATLRSEGRRPTTPSVQRRTRQRDISEVSTKPSVRDQSFFNIDE
NYVSDEDPDYEADDEPVDDEDDSEADEQEHDKPVQVVDLTYDSSLNEQKQ
TLLDGEDDIQPFHGHESHREHKDVRQEDIPFDSDAYESDRAHHSDRGSIV
DTEDEEQLLDFTQWSTKDIRDWLRAHNVRFANLVSKEELIGLVRAKVLQM
ETMDEEEVPPKNQQYAEAPQRDEKPDVRRRRGISVPSVADEDDEVVF