Gcaud9875.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9875.t1
Unique NameGcaud9875.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length372
Homology
BLAST of Gcaud9875.t1 vs. uniprot
Match: A0A2V3IKT8_9FLOR (Nup96 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKT8_9FLOR)

HSP 1 Score: 447 bits (1149), Expect = 8.250e-146
Identity = 225/373 (60.32%), Postives = 281/373 (75.34%), Query Frame = 0
Query:    1 MLRLYADPTGKYPMTSGVYSNCSFGFDYKPLDARFPWLLHQVLSAIIPEATTKAAPCLLADAFSSQLQSAGLPLWAFYVLCSGGAPVENLKAALIRDWRDLKGDVVDVMIEGARAEPMEIEGEDAIGQA--DDDQEVGKVQVRKPVSLRQMASLPFLLDVLKVPSSWIAEAEALAAREKGDALEECKLWLECNSEEGSTNAHSLLTKTIMPEVIVGEDFARYECCVSMLRTLGRRKHISNWLHGGGLLLDYMEHVVGVSKEKPKANVVVLHHMVERLAVFKERAISNVQRQCIRVIADGIATAQRAVLLCVDITSRKELLADVIDDLGRLPVSNSVKSRLTAEYTAEEEKGQIASTRLSGSFPGYGKYIAVEE 371
            +LRLY DP GKYP+ SGVYS CSFGF+YKPLD +F WLLHQVLSAIIPEATT AAP +LAD FSSQL++AGLPLW+FYVLC+ G P+  LK AL+RDW D+  DVV+ ++  A  E M+++G ++  +   + D+E  +  +   VS   + +  FL  VL+VP+ WIAEA A+AAR  GD  EECK+WL C +EEGS NAH+LLT+ IMPEVI+GED   Y  C  MLRTLG+RKHISNW  GGGL+LDYME VVG S+EKPKAN+VVLH MV R+  +KERA +++QR    VIADGIATAQRA+LL VD   +   L ++I+DL RLPVS +V++RL +EYT EEEKG+  S R SG+FPGYGKY+ VEE
Sbjct:  632 LLRLYEDPGGKYPIASGVYSPCSFGFNYKPLDTQFAWLLHQVLSAIIPEATTTAAPYILADGFSSQLRAAGLPLWSFYVLCTAGVPLSVLKNALVRDWPDMANDVVEAVMGRAPEEAMDVDGGNSAVRRLMNRDEESSEDGLLATVSRDDLDAENFLQGVLRVPAVWIAEARAVAARAAGDVFEECKMWLACETEEGSANAHNLLTEQIMPEVIIGEDSTHYGPCTDMLRTLGKRKHISNWRSGGGLVLDYMEQVVGASQEKPKANLVVLHDMVNRVGAYKERAKTDLQRHSATVIADGIATAQRAILLYVDGEMKGRYLTELIEDLERLPVSTTVRARLVSEYTIEEEKGRKVSMRFSGAFPGYGKYLTVEE 1004          
BLAST of Gcaud9875.t1 vs. uniprot
Match: R7Q7U8_CHOCR (Nup96 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7U8_CHOCR)

HSP 1 Score: 293 bits (749), Expect = 4.490e-90
Identity = 161/367 (43.87%), Postives = 227/367 (61.85%), Query Frame = 0
Query:    1 MLRLYADPTGKYPMTSGVYSNCSFGFDYKPLDARFPWLLHQVLSAIIPEATTKAAPCLLADAFSSQLQSAGLPLWAFYVLCSGGAPVENLKAALIRDWRDLKGDVVDVMIEGARAEPMEIEGEDAIGQADDDQEVGKVQVRKPVSLRQMASLPFLLDVLKVPSSWIAEAEALAAREKGDALEECKLWLECNSEEGSTNAHSLLTKTIMPEVIVGEDFARYECCVSMLRTLGRRKHISNWLHGGGLLLDYMEHVVGVSKEKPKANVVVLHHMVERLAVFKERAISNVQRQCIRVIADGIATAQRAVLLCVDITSRKELLADVIDDLGRLPVSNSVKSRLTAEYTAEEEKGQIASTRLSGSFPGYGKYI 367
            +LRLYADPT  YP+T+GVY N S G  Y PLDARF WL++QVL+A+IP+A+T  AP +LAD FSSQL++AGL LW+FYVLCSGGAP   +++ L+RDW ++  DVV+    G        E + A G  DD+     +         ++ +  FL DVL VP  WIAEA+A+AA  + D   ECK W  C +E G+T AH LL+K + PE+I  +D ++ E   S+LR L   KH++NW   GGL+L+Y+E  V   + K +  + V   MV+R+  +  RA +  Q     V+AD IATA+RAVL       R+E++  +++DL RLP S SVK R+T EY  E ++GQ  + R S +   Y +++
Sbjct:  290 LLRLYADPTASYPLTAGVYENESVGAIYSPLDARFSWLIYQVLTAVIPQASTPNAPQMLADEFSSQLRAAGLHLWSFYVLCSGGAPAHVMRSVLMRDWPNMLNDVVEWTPAG--------EADSAGGMRDDEHGERGMDSNLEELAGKLDAETFLEDVLGVPKPWIAEAKAIAAHVEEDLFTECKHWTACGTENGATRAHELLSKHVFPEMIACKDGSQLEEVASVLRQLEGFKHVANWSISGGLILNYLEDTVE-KRGKKRQPLSVYRAMVDRVCAYAARASTPEQVYAGSVMADEIATAERAVLFDAKGEEREEMVEFLVEDLERLPCSKSVKVRITGEYKTEMKRGQAVARRFSTAHVPYSRFV 647          
BLAST of Gcaud9875.t1 vs. uniprot
Match: A0A507D7R2_9FUNG (Peptidase S59 domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D7R2_9FUNG)

HSP 1 Score: 68.2 bits (165), Expect = 1.210e-8
Identity = 63/214 (29.44%), Postives = 95/214 (44.39%), Query Frame = 0
Query:   64 SSQLQSAGLPLWAFYVLCSGGAPVENLKAALIRD---------------WRDLKGDVVDVMIEGARAEP----MEIEGEDA------IGQADDDQEVGKVQVRKPVSLRQMASLPFLLDVLKVPSSWIAEAEALAAREKGDALEECKLWLECNSEEGSTNAHSLLTKTIMPEVIVGEDFARYECCVSMLRTLGRRKHISN-WLHGGGLLLDYME 251
            S  L+S GL  WA YV C   A     +   IR                W D+K  VV     GA A+     M+++  ++        + DDD+  G+             +  FL+D LKVPS+WI EA+AL AR +G+ L E    ++ N     + AH L+   I P+ ++  DF R    +S +       H +  W+ GGGL+L Y++
Sbjct: 1644 SFALESLGLWPWAIYVACF--ASYREAREGRIRQLLEEYYPAHDVTGSCWNDVKKGVV-AGAAGASADQNGVGMDVDTSESPAGGLTSSREDDDEANGE----------GAETWSFLVDKLKVPSTWIHEAKALRARYEGEKLREAIYLIDANHY---STAHRLIIVDIAPDFMLEGDFVRLRALLSRIPI-----HAAEYWMRGGGLILSYLD 1836          
The following BLAST results are available for this feature:
BLAST of Gcaud9875.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IKT8_9FLOR8.250e-14660.32Nup96 domain-containing protein n=1 Tax=Gracilario... [more]
R7Q7U8_CHOCR4.490e-9043.87Nup96 domain-containing protein n=1 Tax=Chondrus c... [more]
A0A507D7R2_9FUNG1.210e-829.44Peptidase S59 domain-containing protein n=1 Tax=Sy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021967Nuclear protein 96PFAMPF12110Nup96coord: 1..172
e-value: 2.2E-11
score: 43.5
IPR037665Nucleoporin peptidase S59-likePANTHERPTHR23198NUCLEOPORINcoord: 22..249
IPR037637Nuclear pore complex protein NUP98-NUP96PANTHERPTHR23198:SF17NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96coord: 22..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_700_length_19386_cov_4.514641contigNODE_700_length_19386_cov_4.514641:4848..5963 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9875.t1Gcaud9875.t1Gracilaria caudata M_176_S67 malemRNANODE_700_length_19386_cov_4.514641 4848..5963 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9875.t1 ID=Gcaud9875.t1|Name=Gcaud9875.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=372bp
MLRLYADPTGKYPMTSGVYSNCSFGFDYKPLDARFPWLLHQVLSAIIPEA
TTKAAPCLLADAFSSQLQSAGLPLWAFYVLCSGGAPVENLKAALIRDWRD
LKGDVVDVMIEGARAEPMEIEGEDAIGQADDDQEVGKVQVRKPVSLRQMA
SLPFLLDVLKVPSSWIAEAEALAAREKGDALEECKLWLECNSEEGSTNAH
SLLTKTIMPEVIVGEDFARYECCVSMLRTLGRRKHISNWLHGGGLLLDYM
EHVVGVSKEKPKANVVVLHHMVERLAVFKERAISNVQRQCIRVIADGIAT
AQRAVLLCVDITSRKELLADVIDDLGRLPVSNSVKSRLTAEYTAEEEKGQ
IASTRLSGSFPGYGKYIAVEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021967Nup96
IPR037665Nucleoporin_S59-like
IPR037637NUP98-NUP96