Gcaud9868.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9868.t1
Unique NameGcaud9868.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length445
Homology
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BLAST of Gcaud9868.t1 vs. uniprot
Match: A0A2V3J659_9FLOR (Protein phosphatase 1 regulatory subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J659_9FLOR)

HSP 1 Score: 154 bits (390), Expect = 9.470e-39
Identity = 276/342 (80.70%), Postives = 293/342 (85.67%), Query Frame = 0 
Query:   87 TTGQPLYIGTDARNSSPAIKAADGSYEEWIDRTNRPLHFIGNGYELTPTLTNLYLTNNRIPVIENLERCVNLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITEIPPKTFATNKKLQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGLYGMPKLAMLELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLKRLSLQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEELALLSECENLETVYLEFNPLANDPQYQRKALNILPSSLEQLDALMVSDVYREL 428
            +  Q  +      ++S   +  D  YEEW+D TN PL FIGNGYELT TLTNLYLTNNRI VIENLERCV LRE XXXXXXXXXXXXXXXXXXXXXXXXXXX I+EIPP +F +NKKLQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGL+GMPKL MLELG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +LL  CE+LETVYLEFNPLA+DP Y++KAL+ILP SLEQLDALMVSDV RE+
Sbjct:   78 SANQSPHNSAQPDSTSDETRKPDEPYEEWLDHTNEPLQFIGNGYELTSTLTNLYLTNNRISVIENLERCVCLRELXXXXXXXXXXXXXXXXXXXXXXXXXXXQISEIPPNSFESNKKLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGLHGMPKLVMLELGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLRNCEDLETVYLEFNPLASDPNYKKKALDILPPSLEQLDALMVSDVRREI 419
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BLAST of Gcaud9868.t1 vs. uniprot
Match: R7QF17_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF17_CHOCR)

HSP 1 Score: 105 bits (262), Expect = 4.320e-21
Identity = 180/316 (56.96%), Postives = 192/316 (60.76%), Query Frame = 0 
Query:  113 EEWIDRTNRPLHFIGNGYELTPTLTNLYLTNNRIPVIENLERCVNLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITEIPPKTFATNKKLQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGLYGMPKLAMLELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLKRLSLQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEELALLSECENLETVYLEFNPLANDPQYQRKALNILPSSLEQLDALMVSDVYREL 428
            EEWIDRTN  L  IGNGYELTPTL +LYLTNNRI  IE L  C+ LRE               XXXXXXXX      I  IP   F  N +L++                                  +S L  MPKL MLELG           XXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           F+EL  L     LETVYLE NPLA DPQYQ KAL ILP+SLEQLDAL+V D  +++
Sbjct:    8 EEWIDRTNEALGEIGNGYELTPTLQHLYLTNNRISKIEKLSPCLALRELVLRQNSIKVIEGIDXXXXXXXXDLYMNQIDHIPSDGFKKNSELKRLDLSFNDIRELKGFPSNNLPNLEELYLIGNKIRIVSDLQSMPKLIMLELGDNRLRVIENLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFWINGNKLSSFDELNSLRSATRLETVYLEANPLAKDPQYQAKALEILPTSLEQLDALLVDDARKQI 323
The following BLAST results are available for this feature:
BLAST of Gcaud9868.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J659_9FLOR9.470e-3980.70Protein phosphatase 1 regulatory subunit 7 n=1 Tax... [more]
R7QF17_CHOCR4.320e-2156.96Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 335..356
e-value: 18.0
score: 11.1
coord: 225..247
e-value: 8.7
score: 13.8
coord: 357..380
e-value: 130.0
score: 4.0
coord: 202..222
e-value: 70.0
score: 6.3
coord: 177..200
e-value: 2.2E-4
score: 30.6
coord: 291..313
e-value: 17.0
score: 11.3
coord: 269..290
e-value: 130.0
score: 4.1
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 291..312
e-value: 3.3E-4
score: 30.0
coord: 155..176
e-value: 0.31
score: 20.1
coord: 201..222
e-value: 24.0
score: 12.5
coord: 269..290
e-value: 5.5E-4
score: 29.2
coord: 247..268
e-value: 0.11
score: 21.6
coord: 132..154
e-value: 4.2
score: 16.4
coord: 357..378
e-value: 17.0
score: 13.8
coord: 335..356
e-value: 0.0013
score: 28.1
coord: 313..334
e-value: 9.9
score: 15.1
coord: 225..246
e-value: 0.099
score: 21.7
coord: 177..198
e-value: 13.0
score: 14.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..82
NoneNo IPR availablePANTHERPTHR45973:SF4PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22coord: 128..194
coord: 200..282
coord: 280..424
NoneNo IPR availablePANTHERPTHR45973PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATEDcoord: 128..194
coord: 200..282
coord: 280..424
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 112..417
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 178..238
e-value: 2.5E-12
score: 46.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 337..358
score: 8.63604
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 293..314
score: 9.036476
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 203..224
score: 8.150895
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 227..248
score: 8.489726
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 157..178
score: 8.466623
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 135..156
score: 8.328012
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 249..270
score: 8.543631
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 315..336
score: 7.018892
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 179..200
score: 8.212501
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 271..292
score: 8.743849
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 129..288
e-value: 3.9E-39
score: 135.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 289..437
e-value: 4.0E-29
score: 102.8
IPR025875Leucine rich repeat 4PFAMPF12799LRR_4coord: 314..353
e-value: 1.6E-6
score: 28.3
coord: 270..310
e-value: 1.9E-6
score: 28.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_584_length_21412_cov_4.339853contigNODE_584_length_21412_cov_4.339853:12415..13749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9868.t1Gcaud9868.t1Gracilaria caudata M_176_S67 malemRNANODE_584_length_21412_cov_4.339853 12415..13749 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9868.t1 ID=Gcaud9868.t1|Name=Gcaud9868.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=445bp
MDTPPRKMQKQEINISNQREIPIGKGQSVKEVAEESSLGQDLRDKNKSSN
DAIVGSSAPSKSELLPTEKPEVSTEDVGDSKSIKESTTGQPLYIGTDARN
SSPAIKAADGSYEEWIDRTNRPLHFIGNGYELTPTLTNLYLTNNRIPVIE
NLERCVNLRELVLRQNAIQKVEGLENLTNLTELDLYMNQITEIPPKTFAT
NKKLQKLDLSFNQLRDISAFPCANLENLEELYLISNKIKTISGLYGMPKL
AMLELGDNRIRTIENLERLTSLQGLWLGRNKITKVENLESLVNLKRLSLQ
SNRIEAIENLDRLTGLEEVYLSHNGLKSMKGVKNLTNLRVLDLGSNFIEH
VEEVDNLKLLKEFWVNGNKLDSFEELALLSECENLETVYLEFNPLANDPQ
YQRKALNILPSSLEQLDALMVSDVYRELDKRESKSLKSGPPEKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR025875Leu-rich_rpt_4