Gcaud9865.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9865.t1
Unique NameGcaud9865.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Homology
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A2V3J6B5_9FLOR (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B5_9FLOR)

HSP 1 Score: 327 bits (839), Expect = 3.290e-112
Identity = 172/201 (85.57%), Postives = 185/201 (92.04%), Query Frame = 0
Query:    1 MVLKNEGSNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIK---RDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLGAMDMDEEKGDE 198
            MV  N  SNVPIRDRARDELRECRSLISSLFVAQA+LLKS+ T +++GKRIK   RD T ESVQIMEKLV QVKSFHSV+EQVLEHQRL+GIIEELRKANSVEDAKI HLGANLRAAESV+QN+LD AKPRLAAFKRANKRP+DVDEVISYGSKISASLSAPLGWDPSQPLGN LPPAPTEEMMRAGKLGA++M+EEKG E
Sbjct:    1 MVQHNHASNVPIRDRARDELRECRSLISSLFVAQANLLKSISTASDDGKRIKDTKRDPTQESVQIMEKLVTQVKSFHSVMEQVLEHQRLHGIIEELRKANSVEDAKIAHLGANLRAAESVLQNSLDEAKPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPSQPLGNFLPPAPTEEMMRAGKLGAVEMEEEKGAE 201          
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A7S2ZT46_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT46_9RHOD)

HSP 1 Score: 121 bits (304), Expect = 1.250e-30
Identity = 74/190 (38.95%), Postives = 111/190 (58.42%), Query Frame = 0
Query:    6 EGSNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLGAMDMDEEK 195
            + S +P RDRAR ELRE  SL+  L +   DL  S       G+    D+     +I ++L+ + K   S+  ++++HQ +N +IE++R +   E+ K+  LG  LR AE  +Q      + R+AA + A K  V+V +++   +KI +S SAP  W P++PLGN LPPAPTEEMMR+G LG + MD  K
Sbjct:    3 DSSAIPARDRARVELREIESLVR-LLIQYFDLSAS-------GRMPSEDVLQPD-RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLGKVRMDPPK 181          
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A7S0BGG5_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGG5_9RHOD)

HSP 1 Score: 118 bits (296), Expect = 3.240e-30
Identity = 69/183 (37.70%), Postives = 109/183 (59.56%), Query Frame = 0
Query:    5 NEGSNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
            ++ S +P RDRAR ELRE  SL+  L +   DL  S       G+    D+     +I ++L+ + K   S+++++++HQ +N +IE++R +   E+ K+  LG  LR AE  +Q      + R+AA + A K  V+V +++   +KI +S +AP  W P++PLGN LPPAP EEMMR+G LG
Sbjct:    2 DDSSAIPARDRARVELREFESLVR-LLIQYFDLSAS-------GRMPGEDVLQPD-RIAQELIERQKVLRSIVDELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLRGAELCLQGPDIDHEARIAALEGAKK--VNVKDIVELAAKIGSSYAAPPNWTPTEPLGNHLPPAPPEEMMRSGHLG 173          
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A7S2ZU48_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU48_9RHOD)

HSP 1 Score: 100 bits (248), Expect = 2.190e-23
Identity = 52/127 (40.94%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   61 QIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
            +I ++L+ + K   S+  ++++HQ +N +IE++R +   E+ K+  LG  LR AE  +Q      + R+AA + A K  V+V +++   +KI +S SAP  W P++PLGN LPPAPTEEMMR+G LG
Sbjct:   20 RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLG 144          
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A1X6P309_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P309_PORUM)

HSP 1 Score: 102 bits (254), Expect = 7.950e-22
Identity = 62/182 (34.07%), Postives = 91/182 (50.00%), Query Frame = 0
Query:    8 SNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLGAM 189
            ++VP+RDRAR  LRECRSL++ LF A   L+         G R+  +   +  Q+ME             +++ EHQR    I  L                         Q ALD A+PRL A   +  RP+ V  +I+ G++++ +++AP GW P QPLG S+PPA T+E M  G+L A+
Sbjct:  100 ASVPVRDRARTVLRECRSLVARLFEAVDALV---------GGRMSSEAVMQPEQVMEAXXXXXXXXXXXXDELTEHQRTAATIARLTAXXXXXXXXXXXXXXXXXXXXXXXQGALDAARPRLVAAAASAARPLPVPALIAAGARLAPAIAAPPGWAPPQPLGGSVPPAVTDEAMWGGRLAAL 272          
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A444SYH5_ARMVU (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SYH5_ARMVU)

HSP 1 Score: 64.7 bits (156), Expect = 3.230e-9
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 0
Query:   25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISA--SLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
            SL+  + +   +LL+     N    + +R  +NE  Q+++ L+ + +     ++   E   + GI+E ++      +  I  L   L  A   +  AL  A+ +L +  RANKRPV+ +E+I Y  +IS+  S++AP  W    P      P PT+  MRAG LG
Sbjct:   12 SLLDDVELITRELLE-----NSVAPKPQRLSSNEQTQLIQLLLTKDEELKETMKVAGEQAVVAGIMESVQAEVDKHEMMIVQLEKQLYEAAHTLSVALYQARQKLDSISRANKRPVNSEELIKYAHRISSTYSVAAPTNWQQGDPRR----PYPTDHEMRAGFLG 167          
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A423SZI8_PENVA (Mediator of RNA polymerase II transcription subunit 4 n=6 Tax=Penaeus TaxID=133894 RepID=A0A423SZI8_PENVA)

HSP 1 Score: 62.8 bits (151), Expect = 1.750e-8
Identity = 49/165 (29.70%), Postives = 78/165 (47.27%), Query Frame = 0
Query:   25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
            SLI    +   +LL+     N    + +R   ++  Q++E L+ +       I+   +  R+  I+E ++      D  I  L   L  A   +  AL  A+ +L +  RANKRPV+ +E+I Y  +IS++  +SAP  W    P      P PT+  MRAG LG
Sbjct:   12 SLIDDTELISKELLE-----NSIAPKAQRLSAHDQAQLIELLIHKDTELKETIKLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 167          
BLAST of Gcaud9865.t1 vs. uniprot
Match: UPI001C486B01 (mediator of RNA polymerase II transcription subunit 4-like isoform X1 n=3 Tax=Homarus americanus TaxID=6706 RepID=UPI001C486B01)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-6
Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 0
Query:   25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISA--SLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
            SLI    +   +LL+     N    + +R  +++  Q++E L+ +       I+   +  R+  I+E ++      D  I  L   L  A   +  AL  A+ ++ +  RANKRPV+ +E+I Y  +IS+  S++AP  W    P      P P +  MRAG LG
Sbjct:   17 SLIDDTELISKELLE-----NSIAPKPQRLSSSDLAQLIELLILKDGELKDTIKLANDQARIASIMETVQAEVDKHDQMILQLEKQLHDAHHTLSVALYQARQKMQSIARANKRPVNSEELIKYAHRISSTYSVTAPDTWQQGDPRR----PYPIDLEMRAGFLG 172          
BLAST of Gcaud9865.t1 vs. uniprot
Match: UPI0018A6E048 (mediator of RNA polymerase II transcription subunit 4-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6E048)

HSP 1 Score: 57.4 bits (137), Expect = 1.290e-6
Identity = 50/174 (28.74%), Postives = 82/174 (47.13%), Query Frame = 0
Query:   25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLV---AQVKSFHSVIEQVLEHQ------RLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
            SLI    +   +LL+     N    + +R  +++  Q++E L+    ++K  +   +  +  Q      R+  I+E ++      D  I  L   L  A   +  AL  A+ +L +  RANKRPV+ +E+I Y  +IS++  +SAP  W    P      P PT+  MRAG LG
Sbjct:   12 SLIDDTELISKELLE-----NSIAPKAQRLSSHDQAQLIELLIHKDTELKENYKASKNTITRQLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 176          
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A024GRI1_9STRA (J domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRI1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.310e-6
Identity = 44/178 (24.72%), Postives = 87/178 (48.88%), Query Frame = 0
Query:   12 IRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQI-MEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDE--VISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKL 186
            + D     L+E RS++++L       L+S+ T +     I  +I   SVQ  + +L+   +   + ++ +  HQ     + +L+     ++ ++      LR A+  +QN  +  +  L   ++  ++ V +D   +++Y  +I+ + SAP  W P  P+    PPAP E++MRAG L
Sbjct:  690 VGDYVECALQEHRSIVTNL-------LESINTASLPPSTI-TNIRLRSVQEQVHRLLESDRRLATAVKTLWTHQITQKTLFQLQNEIKAKEERVIEYATQLRNAQVAIQNVFEKHQYVLQQVRKPKQQQVFLDPQLLVAYAHRIAGTTSAPKHWQPGLPMSGFAPPAPQEQIMRAGVL 859          
The following BLAST results are available for this feature:
BLAST of Gcaud9865.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2V3J6B5_9FLOR3.290e-11285.57Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZT46_9RHOD1.250e-3038.95Mediator of RNA polymerase II transcription subuni... [more]
A0A7S0BGG5_9RHOD3.240e-3037.70Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZU48_9RHOD2.190e-2340.94Mediator of RNA polymerase II transcription subuni... [more]
A0A1X6P309_PORUM7.950e-2234.07Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A444SYH5_ARMVU3.230e-929.09Mediator of RNA polymerase II transcription subuni... [more]
A0A423SZI8_PENVA1.750e-829.70Mediator of RNA polymerase II transcription subuni... [more]
UPI001C486B011.170e-628.48mediator of RNA polymerase II transcription subuni... [more]
UPI0018A6E0481.290e-628.74mediator of RNA polymerase II transcription subuni... [more]
A0A024GRI1_9STRA1.310e-624.72J domain-containing protein n=1 Tax=Albugo candida... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 61..194
e-value: 4.3E-19
score: 69.0
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 9..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_584_length_21412_cov_4.339853contigNODE_584_length_21412_cov_4.339853:7401..8177 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9865.t1Gcaud9865.t1Gracilaria caudata M_176_S67 malemRNANODE_584_length_21412_cov_4.339853 7401..8177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9865.t1 ID=Gcaud9865.t1|Name=Gcaud9865.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MVLKNEGSNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKR
IKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVE
DAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGS
KISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLGAMDMDEEKGDE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4