Gcaud9865.t1 (polypeptide) Gracilaria caudata M_176_S67 male
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Overview
Homology
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A2V3J6B5_9FLOR (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B5_9FLOR) HSP 1 Score: 327 bits (839), Expect = 3.290e-112 Identity = 172/201 (85.57%), Postives = 185/201 (92.04%), Query Frame = 0
Query: 1 MVLKNEGSNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIK---RDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLGAMDMDEEKGDE 198
MV N SNVPIRDRARDELRECRSLISSLFVAQA+LLKS+ T +++GKRIK RD T ESVQIMEKLV QVKSFHSV+EQVLEHQRL+GIIEELRKANSVEDAKI HLGANLRAAESV+QN+LD AKPRLAAFKRANKRP+DVDEVISYGSKISASLSAPLGWDPSQPLGN LPPAPTEEMMRAGKLGA++M+EEKG E
Sbjct: 1 MVQHNHASNVPIRDRARDELRECRSLISSLFVAQANLLKSISTASDDGKRIKDTKRDPTQESVQIMEKLVTQVKSFHSVMEQVLEHQRLHGIIEELRKANSVEDAKIAHLGANLRAAESVLQNSLDEAKPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPSQPLGNFLPPAPTEEMMRAGKLGAVEMEEEKGAE 201
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A7S2ZT46_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT46_9RHOD) HSP 1 Score: 121 bits (304), Expect = 1.250e-30 Identity = 74/190 (38.95%), Postives = 111/190 (58.42%), Query Frame = 0
Query: 6 EGSNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLGAMDMDEEK 195
+ S +P RDRAR ELRE SL+ L + DL S G+ D+ +I ++L+ + K S+ ++++HQ +N +IE++R + E+ K+ LG LR AE +Q + R+AA + A K V+V +++ +KI +S SAP W P++PLGN LPPAPTEEMMR+G LG + MD K
Sbjct: 3 DSSAIPARDRARVELREIESLVR-LLIQYFDLSAS-------GRMPSEDVLQPD-RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLGKVRMDPPK 181
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A7S0BGG5_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGG5_9RHOD) HSP 1 Score: 118 bits (296), Expect = 3.240e-30 Identity = 69/183 (37.70%), Postives = 109/183 (59.56%), Query Frame = 0
Query: 5 NEGSNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
++ S +P RDRAR ELRE SL+ L + DL S G+ D+ +I ++L+ + K S+++++++HQ +N +IE++R + E+ K+ LG LR AE +Q + R+AA + A K V+V +++ +KI +S +AP W P++PLGN LPPAP EEMMR+G LG
Sbjct: 2 DDSSAIPARDRARVELREFESLVR-LLIQYFDLSAS-------GRMPGEDVLQPD-RIAQELIERQKVLRSIVDELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLRGAELCLQGPDIDHEARIAALEGAKK--VNVKDIVELAAKIGSSYAAPPNWTPTEPLGNHLPPAPPEEMMRSGHLG 173
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A7S2ZU48_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU48_9RHOD) HSP 1 Score: 100 bits (248), Expect = 2.190e-23 Identity = 52/127 (40.94%), Postives = 82/127 (64.57%), Query Frame = 0
Query: 61 QIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
+I ++L+ + K S+ ++++HQ +N +IE++R + E+ K+ LG LR AE +Q + R+AA + A K V+V +++ +KI +S SAP W P++PLGN LPPAPTEEMMR+G LG
Sbjct: 20 RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLG 144
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A1X6P309_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P309_PORUM) HSP 1 Score: 102 bits (254), Expect = 7.950e-22 Identity = 62/182 (34.07%), Postives = 91/182 (50.00%), Query Frame = 0
Query: 8 SNVPIRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLGAM 189
++VP+RDRAR LRECRSL++ LF A L+ G R+ + + Q+ME +++ EHQR I L Q ALD A+PRL A + RP+ V +I+ G++++ +++AP GW P QPLG S+PPA T+E M G+L A+
Sbjct: 100 ASVPVRDRARTVLRECRSLVARLFEAVDALV---------GGRMSSEAVMQPEQVMEAXXXXXXXXXXXXDELTEHQRTAATIARLTAXXXXXXXXXXXXXXXXXXXXXXXQGALDAARPRLVAAAASAARPLPVPALIAAGARLAPAIAAPPGWAPPQPLGGSVPPAVTDEAMWGGRLAAL 272
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A444SYH5_ARMVU (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SYH5_ARMVU) HSP 1 Score: 64.7 bits (156), Expect = 3.230e-9 Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 0
Query: 25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISA--SLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
SL+ + + +LL+ N + +R +NE Q+++ L+ + + ++ E + GI+E ++ + I L L A + AL A+ +L + RANKRPV+ +E+I Y +IS+ S++AP W P P PT+ MRAG LG
Sbjct: 12 SLLDDVELITRELLE-----NSVAPKPQRLSSNEQTQLIQLLLTKDEELKETMKVAGEQAVVAGIMESVQAEVDKHEMMIVQLEKQLYEAAHTLSVALYQARQKLDSISRANKRPVNSEELIKYAHRISSTYSVAAPTNWQQGDPRR----PYPTDHEMRAGFLG 167
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A423SZI8_PENVA (Mediator of RNA polymerase II transcription subunit 4 n=6 Tax=Penaeus TaxID=133894 RepID=A0A423SZI8_PENVA) HSP 1 Score: 62.8 bits (151), Expect = 1.750e-8 Identity = 49/165 (29.70%), Postives = 78/165 (47.27%), Query Frame = 0
Query: 25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
SLI + +LL+ N + +R ++ Q++E L+ + I+ + R+ I+E ++ D I L L A + AL A+ +L + RANKRPV+ +E+I Y +IS++ +SAP W P P PT+ MRAG LG
Sbjct: 12 SLIDDTELISKELLE-----NSIAPKAQRLSAHDQAQLIELLIHKDTELKETIKLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 167
BLAST of Gcaud9865.t1 vs. uniprot
Match: UPI001C486B01 (mediator of RNA polymerase II transcription subunit 4-like isoform X1 n=3 Tax=Homarus americanus TaxID=6706 RepID=UPI001C486B01) HSP 1 Score: 58.2 bits (139), Expect = 1.170e-6 Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 0
Query: 25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISA--SLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
SLI + +LL+ N + +R +++ Q++E L+ + I+ + R+ I+E ++ D I L L A + AL A+ ++ + RANKRPV+ +E+I Y +IS+ S++AP W P P P + MRAG LG
Sbjct: 17 SLIDDTELISKELLE-----NSIAPKPQRLSSSDLAQLIELLILKDGELKDTIKLANDQARIASIMETVQAEVDKHDQMILQLEKQLHDAHHTLSVALYQARQKMQSIARANKRPVNSEELIKYAHRISSTYSVTAPDTWQQGDPRR----PYPIDLEMRAGFLG 172
BLAST of Gcaud9865.t1 vs. uniprot
Match: UPI0018A6E048 (mediator of RNA polymerase II transcription subunit 4-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6E048) HSP 1 Score: 57.4 bits (137), Expect = 1.290e-6 Identity = 50/174 (28.74%), Postives = 82/174 (47.13%), Query Frame = 0
Query: 25 SLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQIMEKLV---AQVKSFHSVIEQVLEHQ------RLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LSAPLGWDPSQPLGNSLPPAPTEEMMRAGKLG 187
SLI + +LL+ N + +R +++ Q++E L+ ++K + + + Q R+ I+E ++ D I L L A + AL A+ +L + RANKRPV+ +E+I Y +IS++ +SAP W P P PT+ MRAG LG
Sbjct: 12 SLIDDTELISKELLE-----NSIAPKAQRLSSHDQAQLIELLIHKDTELKENYKASKNTITRQLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 176
BLAST of Gcaud9865.t1 vs. uniprot
Match: A0A024GRI1_9STRA (J domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRI1_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.310e-6 Identity = 44/178 (24.72%), Postives = 87/178 (48.88%), Query Frame = 0
Query: 12 IRDRARDELRECRSLISSLFVAQADLLKSVPTGNEEGKRIKRDITNESVQI-MEKLVAQVKSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKITHLGANLRAAESVMQNALDGAKPRLAAFKRANKRPVDVDE--VISYGSKISASLSAPLGWDPSQPLGNSLPPAPTEEMMRAGKL 186
+ D L+E RS++++L L+S+ T + I +I SVQ + +L+ + + ++ + HQ + +L+ ++ ++ LR A+ +QN + + L ++ ++ V +D +++Y +I+ + SAP W P P+ PPAP E++MRAG L
Sbjct: 690 VGDYVECALQEHRSIVTNL-------LESINTASLPPSTI-TNIRLRSVQEQVHRLLESDRRLATAVKTLWTHQITQKTLFQLQNEIKAKEERVIEYATQLRNAQVAIQNVFEKHQYVLQQVRKPKQQQVFLDPQLLVAYAHRIAGTTSAPKHWQPGLPMSGFAPPAPQEQIMRAGVL 859 The following BLAST results are available for this feature:
BLAST of Gcaud9865.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gcaud9865.t1 ID=Gcaud9865.t1|Name=Gcaud9865.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
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