Gcaud9860.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9860.t1
Unique NameGcaud9860.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length144
Homology
BLAST of Gcaud9860.t1 vs. uniprot
Match: A0A2V3IMT3_9FLOR (40S ribosomal protein S12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMT3_9FLOR)

HSP 1 Score: 271 bits (692), Expect = 9.280e-92
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0
Query:    1 MSDGDVPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKENKDGGDE 143
            MSD +VPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEV KALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVG TSCVIKEFGESSPGYEFLLEYLKENK+ GDE
Sbjct:    1 MSD-EVPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVVKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKEDGDE 142          
BLAST of Gcaud9860.t1 vs. uniprot
Match: R7QB31_CHOCR (40S ribosomal protein S12 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB31_CHOCR)

HSP 1 Score: 230 bits (586), Expect = 2.010e-75
Identity = 113/131 (86.26%), Postives = 123/131 (93.89%), Query Frame = 0
Query:   13 EDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKENKDGGDE 143
            EDVGEMD++KALQEV+KK++VHDGLVRGLNE AKALDRG AQLC+LASDCDEP YTRLIEALC+AH VALVRVPDKKQLGEWAGLCKIDEEGNATKVVG+T  VIKEFGESSPGYEFLLEY+KE+K  GDE
Sbjct:   26 EDVGEMDLMKALQEVMKKAIVHDGLVRGLNECAKALDRGLAQLCVLASDCDEPAYTRLIEALCSAHSVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGSTCVVIKEFGESSPGYEFLLEYIKEDK--GDE 154          
BLAST of Gcaud9860.t1 vs. uniprot
Match: A0A2V3INP5_9FLOR (40S ribosomal protein S12 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INP5_9FLOR)

HSP 1 Score: 226 bits (575), Expect = 1.090e-73
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0
Query:   18 MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKENK 138
            MDILKALQEVLKKS+VHDGL RGLNEV KALDRGQ QLCILASDCDEPRYTRLI+ALCA HEVALVRVPDKKQLGEWAGLCKID+EGNA KVVG TSCVIKEFGESSPGYE LLEYLKE+K
Sbjct:    1 MDILKALQEVLKKSVVHDGLFRGLNEVVKALDRGQVQLCILASDCDEPRYTRLIDALCAVHEVALVRVPDKKQLGEWAGLCKIDKEGNAAKVVGATSCVIKEFGESSPGYELLLEYLKESK 121          
BLAST of Gcaud9860.t1 vs. uniprot
Match: A0A1X6P156_PORUM (40S ribosomal protein S12 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P156_PORUM)

HSP 1 Score: 197 bits (501), Expect = 1.500e-62
Identity = 97/136 (71.32%), Postives = 110/136 (80.88%), Query Frame = 0
Query:    5 DVPVDAVPEDVG-EMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKENKD 139
            DVP  A   D G  MD++KALQE+LKK++VHDGLVRGL E AKALDR +AQLCILA DCDEP YTRLIEALCA H +  VRVP+KKQLGEWAGLCKID EG ATKVVG T  V+K+FGE S G+EFLL+YL  NK+
Sbjct:   13 DVPAPAAAGDTGGAMDLMKALQEILKKAIVHDGLVRGLRECAKALDRREAQLCILAQDCDEPAYTRLIEALCAEHSINFVRVPEKKQLGEWAGLCKIDAEGVATKVVGCTCAVVKQFGERSAGFEFLLDYLNANKE 148          
BLAST of Gcaud9860.t1 vs. uniprot
Match: A0A2V3IBS1_9FLOR (40S ribosomal protein S12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBS1_9FLOR)

HSP 1 Score: 182 bits (463), Expect = 3.500e-57
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0
Query:   18 MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKENK 138
            MDILKALQEVLKKS+VH    RGLNEV KALDRGQ QLCILASDCDEPRYTRLI+ALCA HEVALVRVPDKKQLGEWAGLCKID+E               EFGESSPGYE LLEYLKE+K
Sbjct:    1 MDILKALQEVLKKSVVHTDWFRGLNEVVKALDRGQVQLCILASDCDEPRYTRLIDALCAVHEVALVRVPDKKQLGEWAGLCKIDKE---------------EFGESSPGYELLLEYLKESK 106          
BLAST of Gcaud9860.t1 vs. uniprot
Match: A0A5J4Z5L5_PORPP (40S ribosomal protein S12 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5L5_PORPP)

HSP 1 Score: 179 bits (453), Expect = 2.510e-55
Identity = 85/123 (69.11%), Postives = 101/123 (82.11%), Query Frame = 0
Query:   14 DVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKE 136
            D GEMDI KALQEVLKK+L+HDGL+RGL E AKALDRG+AQLC+LASDCDEP YTRL+EALCA   + LV+VP+K QLGEWAGL K+DE+G  TK V  +  V+K+FGE S G +FL EYL+E
Sbjct:   18 DEGEMDITKALQEVLKKALIHDGLLRGLRECAKALDRGEAQLCVLASDCDEPAYTRLVEALCAERGINLVKVPEKMQLGEWAGLAKVDEQGIVTKSVKASCVVVKDFGEQSKGLDFLKEYLRE 140          
BLAST of Gcaud9860.t1 vs. uniprot
Match: A0A7S0ZM77_9RHOD (40S ribosomal protein S12 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZM77_9RHOD)

HSP 1 Score: 173 bits (439), Expect = 3.280e-53
Identity = 88/128 (68.75%), Postives = 102/128 (79.69%), Query Frame = 0
Query:   10 AVPEDVGE--MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLK 135
            +VPE + E  MDI  ALQEVLK +L+HDGLVRGL E AKALDR QAQLCILASDCDEP YTRL+EALCA   + LV+VP+K QLG+WAGL KIDE G ATKVV  +  V+K+FG++S G EFLL YLK
Sbjct:   13 SVPEVLDESVMDITMALQEVLKVALIHDGLVRGLRECAKALDRRQAQLCILASDCDEPAYTRLVEALCAERGINLVKVPEKMQLGQWAGLAKIDETGTATKVVKASCVVVKDFGDTSKGLEFLLNYLK 140          
BLAST of Gcaud9860.t1 vs. uniprot
Match: U4TUS6_DENPD (40S ribosomal protein S12 n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TUS6_DENPD)

HSP 1 Score: 166 bits (421), Expect = 1.910e-50
Identity = 76/123 (61.79%), Postives = 99/123 (80.49%), Query Frame = 0
Query:   16 GEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKENK 138
            G MD+ +ALQEVLKK+L+HDG+V GL+E AKALD+ QA LC+LA +CDEPRY +L++ALCA H++ L++V + K+LGEW+GLCKID  G A KVVG++  VIK+FGE SP  + L EYLK NK
Sbjct:   22 GPMDVNQALQEVLKKALIHDGVVHGLHEAAKALDKRQAVLCVLAENCDEPRYKQLVQALCAEHQIDLIKVDNNKKLGEWSGLCKIDSTGKARKVVGSSCVVIKDFGEESPALDVLKEYLKNNK 144          
BLAST of Gcaud9860.t1 vs. uniprot
Match: M1XYD7_9METZ (40S ribosomal protein S12 n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XYD7_9METZ)

HSP 1 Score: 164 bits (416), Expect = 8.820e-50
Identity = 79/134 (58.96%), Postives = 101/134 (75.37%), Query Frame = 0
Query:    2 SDGDVPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLK 135
            ++GD P  AV      MDI  AL EVLK SL+HDGL RGL+E AKALD+ QA LC+LAS+CDEP Y RL+EALCA H++ L++V D K+LGEW+GLCK+D+EG A KVVG +  V+K++G+ S   + LLEYLK
Sbjct:    3 AEGDAPAAAV-----SMDITTALTEVLKTSLIHDGLARGLHEAAKALDKRQAHLCVLASNCDEPSYVRLVEALCAEHQIKLLKVDDSKKLGEWSGLCKLDKEGKARKVVGCSCVVVKDYGKESQALDVLLEYLK 131          
BLAST of Gcaud9860.t1 vs. uniprot
Match: UPI000A2A7286 (40S ribosomal protein S12 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7286)

HSP 1 Score: 163 bits (412), Expect = 3.940e-49
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 0
Query:    4 GDVPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLK 135
            GDVP    P   G MDI  ALQEVLK +L+H+GLVRGL+E AKALDR QA LCILA++CDEP Y +L+EALCA H + L+RV D K+LGEW+GLCKID+EG A KVVG +  VI ++G+ SP ++ +++Y K
Sbjct:    7 GDVPS---PAPGGPMDINTALQEVLKTALIHNGLVRGLHEAAKALDRRQAHLCILANNCDEPMYVKLVEALCAEHTIKLLRVDDSKKLGEWSGLCKIDKEGKARKVVGCSCVVITDYGKESPAHDVVMQYSK 135          
The following BLAST results are available for this feature:
BLAST of Gcaud9860.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMT3_9FLOR9.280e-9295.8040S ribosomal protein S12 n=1 Tax=Gracilariopsis c... [more]
R7QB31_CHOCR2.010e-7586.2640S ribosomal protein S12 n=1 Tax=Chondrus crispus... [more]
A0A2V3INP5_9FLOR1.090e-7390.9140S ribosomal protein S12 n=2 Tax=Gracilariopsis c... [more]
A0A1X6P156_PORUM1.500e-6271.3240S ribosomal protein S12 n=1 Tax=Porphyra umbilic... [more]
A0A2V3IBS1_9FLOR3.500e-5777.6940S ribosomal protein S12 n=1 Tax=Gracilariopsis c... [more]
A0A5J4Z5L5_PORPP2.510e-5569.1140S ribosomal protein S12 n=1 Tax=Porphyridium pur... [more]
A0A7S0ZM77_9RHOD3.280e-5368.7540S ribosomal protein S12 n=1 Tax=Timspurckia olig... [more]
U4TUS6_DENPD1.910e-5061.7940S ribosomal protein S12 n=2 Tax=Dendroctonus pon... [more]
M1XYD7_9METZ8.820e-5058.9640S ribosomal protein S12 n=1 Tax=Sycon ciliatum T... [more]
UPI000A2A72863.940e-4959.8540S ribosomal protein S12 n=1 Tax=Exaiptasia diaph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 41..57
score: 56.68
coord: 107..120
score: 37.01
coord: 27..40
score: 65.58
coord: 82..103
score: 63.64
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 13..137
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 23..41
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 23..115
e-value: 9.8E-30
score: 102.1
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 4..137
e-value: 4.1E-51
score: 173.7
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 17..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_374_length_28066_cov_4.260947contigNODE_374_length_28066_cov_4.260947:19655..20086 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9860.t1Gcaud9860.t1Gracilaria caudata M_176_S67 malemRNANODE_374_length_28066_cov_4.260947 19655..20086 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9860.t1 ID=Gcaud9860.t1|Name=Gcaud9860.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=144bp
MSDGDVPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDR
GQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKI
DEEGNATKVVGTTSCVIKEFGESSPGYEFLLEYLKENKDGGDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like