Gcaud9837.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9837.t1
Unique NameGcaud9837.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length281
Homology
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A2V3J1P1_9FLOR (NifU-like protein 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1P1_9FLOR)

HSP 1 Score: 374 bits (961), Expect = 3.090e-127
Identity = 191/281 (67.97%), Postives = 235/281 (83.63%), Query Frame = 0
Query:    1 LFLAATQEQQICGVYAVLDADKEPVYIGMSRNVYDSLETHYRNYSELVCYVKVMTFAIPMVREMKLVIDSWVLDNEVTPEGNADGWPESDSQLAEQARHIGDVGEIQPASGTIVSPFQNDPLANTTKKELLELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVNTQTTTD-LSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLMEKVPGIEAVTFE 280
            +F+AATQEQ + GVYA+LDA+KE VYIGMS NV +S+ETH +N+ + V YVK+MTFAIPMVREMKLV+DSW+LDNE TP+GN + W E+D QLA QA  I +    Q +S TI+SPF++DPLAN+ KKEL+ELSA NVD VLDEVRP+LVSDGGNVSV+ V+ + G+V LELEGACSSCASA TTMKLGIEK +KERFG +L EVV+V+ Q  ++ LS+E CE+ALD +++TLR LGA VSV EIDEGEV+LSF GPN+L++GVEK L+EKVPGIEAVTFE
Sbjct:   70 IFIAATQEQLLKGVYALLDAEKEVVYIGMSTNVCESVETHLQNHPDDVYYVKLMTFAIPMVREMKLVVDSWILDNETTPKGNIESWQEADVQLAAQAALIPNTMVAQTSSNTIISPFESDPLANSEKKELMELSALNVDIVLDEVRPFLVSDGGNVSVINVDIEAGRVELELEGACSSCASATTTMKLGIEKVMKERFGDRLREVVAVDAQMASEGLSIESCEQALDSLKETLRGLGAYVSVYEIDEGEVVLSFTGPNNLKYGVEKALLEKVPGIEAVTFE 350          
BLAST of Gcaud9837.t1 vs. uniprot
Match: R7QMT6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMT6_CHOCR)

HSP 1 Score: 272 bits (695), Expect = 6.080e-87
Identity = 136/284 (47.89%), Postives = 201/284 (70.77%), Query Frame = 0
Query:    1 LFLAATQEQQICGVYAVLDADKEPVYIGMSRNVYDSLETHYRNYS-ELVCYVKVMTFAIPMVREMKLVIDSWVLDNEVTPEGNADGWPESDSQLAEQARHI-GDVGEIQPASGTIVSPFQNDPLANTTKKELLELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVNTQTTT--DLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLMEKVPGIEAVTFE 280
            +F+A T+   + GVY V+D ++   Y+GMSR+V  SL TH  N+S ++  +VKVMTFA+P  R+MKLV+D+W+ DNE  P+GN + W ESD++LA++A  +  +V  ++P    I+SPF++  +      E+LEL+  NVD VL+EVRP+L+SDGGNVSV+ V+  + +V L+LEGAC SC SA  TM++GIEK+L+ +FG  + E+ +V+       +LSV  CE  LD +R  L+ LGA V + E+D+GEVI+SF+GPN+L++GVE  L EK+P ++AVTFE
Sbjct:   68 VFIAGTEGDTVAGVYGVMDGERNLTYVGMSRDVAKSLLTHVENHSPDVANFVKVMTFAMPTARDMKLVVDTWIRDNEGVPQGNIEKWVESDAELAKEASLLPSEVAVVEP----IISPFESAQVETQQPVEVLELTEDNVDTVLEEVRPFLISDGGNVSVLAVDVASKRVELQLEGACGSCESATATMQMGIEKSLRAKFGENIGEITAVSAPEVAPGELSVATCEAVLDEVRDALKGLGATVKILEVDDGEVIVSFSGPNNLKYGVEMLLQEKLPEVDAVTFE 347          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A7S4NVX3_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NVX3_GUITH)

HSP 1 Score: 164 bits (414), Expect = 2.330e-44
Identity = 102/303 (33.66%), Postives = 162/303 (53.47%), Query Frame = 0
Query:    2 FLAATQEQQICGVYAVLDADKEPVYIGMSRNVYDSLETHYRNYSELVCYVKVMTFAIPMVREMKLVIDSWVLDNE----VTPEGNAD---GWPESDSQLAEQARHIG-----------------------DVGEIQPASGTIVSPFQNDPLANT--TKKELLELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVNTQTTTD-LSVEVCEKALDPIRQTLRSLGADVSVTEID--EGEVILSFAGPNSLRHGVEKTLME 269
            FL  T+   + GVYA+ DA +   +IG + +++ ++    + + E   +V+ +      + +++L+  SWV D E      P GN +    W     QL       G                       D  E    +G +VSPF ++  A +  + +E L L    VD +LDEVRPYL++DGGN  VV V++ TG V L+LEGAC +C S+  T+K+GIE+AL+ER+GS+L +VV V  +  ++ LSV++C K L P++  +  LG  + V E+D  EG V + ++GP  L +G+E TL +
Sbjct:   88 FLQLTKGSPLPGVYAISDASRTCRFIGSAGDLHAAVSAQQKRHEEECAWVRALVKPAAGMEQLQLIASSWVEDVEEEEGYCPAGNVNDDSSWALVQQQLGTSGSRTGALRGEETTVDRELSRRSLDKAVEDTEESYENAG-VVSPFADNAGAVSMGSNQESLPLDVQTVDKILDEVRPYLIADGGNCRVVAVDASTGDVSLQLEGACGTCPSSTVTLKMGIERALRERYGSRLGQVVQVTGEEDSESLSVKLCNKLLAPVKPAVEGLGGSMEVVEVDAAEGRVTIKYSGPQKLTYGIELTLKD 389          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A1X6PEC1_PORUM (NifU domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEC1_PORUM)

HSP 1 Score: 144 bits (364), Expect = 2.120e-37
Identity = 75/149 (50.34%), Postives = 98/149 (65.77%), Query Frame = 0
Query:  131 LELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVNTQTTTDLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLMEKVPGIEAVTF 279
            LEL+  NVD VLD+VRPYL+SDGGN+SVV V++++  VVL LEGAC SCAS+ TTMK+G+E+ L+E F   L +V +V+    T   V   E ALD +R  L  LG  VS      GEV+L ++GP  L +G+E  L + VPG   VTF
Sbjct:  200 LELTPDNVDRVLDDVRPYLLSDGGNISVVSVDARSAAVVLRLEGACGSCASSTTTMKMGVERVLREAFPG-LGDVSAVSEAPATPFGVAAVEAALDNVRGALNGLGGSVSCLTAANGEVVLLYSGPPKLAYGIELMLRDSVPGTMGVTF 347          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A7S4B0G1_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B0G1_CHRCT)

HSP 1 Score: 144 bits (364), Expect = 4.570e-37
Identity = 92/278 (33.09%), Postives = 144/278 (51.80%), Query Frame = 0
Query:   10 QICGVYAVLDADKEPVYIGMSRNVYDSLETHYRNYSELVCYVKVMTFAIPMVREMKLVIDSWVLDNEVTPEGN-ADG--WPES-DSQLAEQARHIGDVGEIQPASGTIVSPFQNDPL-----ANTTKKELLELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVN---------TQTTTDLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLME 269
            +I  VY++ DAD    ++G SRN+  SL+     + + V  V+ +++  P    M+    +W+     TP+GN AD   W ++  S ++EQ+       +  P     V+     P      A ++    LEL+A NVD VLDEVRPYL++DGGNV V +++  T  V L+L+GAC SC S+  TMK+GIE+ L+E+F + + EV +V          +   + L  E     L  I   +  LG  V V  +D+G V L + GP  ++ G+E  L +
Sbjct:  105 KIAAVYSIADADARVQFVGTSRNLALSLQALLSKFPDQVKRVRALSYQSPSRSSMEEAKRAWIKALGYTPDGNGADSAVWADAIKSAVSEQSNDAAAGTDAAPVQSPFVAGVDPAPTVAAAPAPSSTATGLELTAANVDTVLDEVRPYLIADGGNVKVARIDMDTRSVYLQLQGACGSCPSSTVTMKMGIERVLREKF-ADIREVAAVEDDAEDVTEGSDAASGLDAEAVLGTLSQIMPAITGLGGSVEVVSVDDGNVQLRYQGPPKIKFGIELALKD 381          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A2P2MRC8_RHIMU (Uncharacterized protein MANES_05G012600 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MRC8_RHIMU)

HSP 1 Score: 137 bits (344), Expect = 6.900e-36
Identity = 71/171 (41.52%), Postives = 105/171 (61.40%), Query Frame = 0
Query:  109 ASGTIVSPFQNDPLANTTKKELLELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVNTQTTTDLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLMEKVPGIEAVTF 279
            AS +   P  + P   + +K   EL+A NVD VL++VRPYL+SDGGNV VV V+     + L+L+GAC SC S+ TTMK+GIE+ LKE+FG  + ++  V  +T T+ +VE     LD +R  +R+ G  V V  ++ GE ++ + GP S+  G++  + EK P I  V F
Sbjct:   50 ASPSAPGPTSSSPGLYSAQK--FELTAQNVDMVLEDVRPYLISDGGNVDVVSVDDSV--ISLKLQGACGSCPSSTTTMKMGIERVLKEKFGDAVKDIRQVYDETITETTVEAVNGHLDILRPAIRNYGGSVEVLSVENGECLVKYTGPESIGSGIKAAIKEKFPDIINVIF 216          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A6S9FDF6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FDF6_HETAK)

HSP 1 Score: 141 bits (355), Expect = 1.040e-35
Identity = 99/290 (34.14%), Postives = 148/290 (51.03%), Query Frame = 0
Query:    9 QQICGVYAVLDADKEPVYIGMSRNVYDSLETHYRNYSE-LVCYVKVMTFAIPMVREMKLVIDSWVLDNEVTPEGNAD----GWPESDSQLAEQARHIGDVGEI-----QPASGTIV--SPFQNDPLANTTKKEL--------------LELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERF-GSQLNEVVSVNTQTTT--DLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLME 269
            +++  VY VLD   +  ++G+++N+  SL+TH     + LV      TF  P   EM+ V  SW+ +   TP GN       W                          PAS  ++  SPF  D   NT +KE               L+L+  NVD VL+EVRPYL+SDGGN+ VV V++    + + L+GAC SC S+  TM++G+E+ L+E F G Q  EVV     +T   +L+VE+ +  LD IR  +R++G  ++V    +G V L + GP+ +R GVE TL +
Sbjct:  102 KKVAAVYGVLDIAGQVKFVGLTKNLAASLQTHQDQLEQRLVHTACATTFRTPNKEEMEFVRKSWIKELGYTPVGNTKLGRAQWAPXXXXXXXXXXXXXXXXXXXXXXXDPASEAVIDASPFAED---NTEQKEESFVPPEVKQSECKNLDLTPENVDKVLEEVRPYLISDGGNIKVVGVDTDRRAIQVALQGACGSCPSSTVTMQMGVERVLRENFAGLQPVEVVEDPDLSTENKELTVELVDGILDQIRPAIRAMGGSLAVASARDGRVELDYQGPDKIRFGVELTLKD 388          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A022S238_ERYGU (NifU domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022S238_ERYGU)

HSP 1 Score: 135 bits (340), Expect = 2.300e-35
Identity = 68/151 (45.03%), Postives = 96/151 (63.58%), Query Frame = 0
Query:  129 ELLELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVNTQTTTDLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLMEKVPGIEAVTF 279
            E  EL++ NVD VLD VRPYL++DGGNV VV V +  G V L+L+GAC SC S+ TTMKLGIEK LKE+FG  + ++  V  Q  T+ +VE   + LD +R  +++ G  V V  + +G   + + GP+S+  G++  + EK P I  V F
Sbjct:   62 EQFELTSENVDKVLDNVRPYLIADGGNVDVVSVEN--GVVSLKLQGACESCPSSTTTMKLGIEKVLKEKFGDAIKDICQVYDQQITETNVEAVNRHLDILRPAIKNFGGSVEVLSVVDGNCSVKYVGPDSIGSGIKAAIKEKFPDIVNVEF 210          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A1S2XVS6_CICAR (nifU-like protein 1, chloroplastic n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XVS6_CICAR)

HSP 1 Score: 135 bits (339), Expect = 3.070e-35
Identity = 69/166 (41.57%), Postives = 103/166 (62.05%), Query Frame = 0
Query:  115 SPFQNDPLANTTKKELLELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSV-NTQTTTDLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLMEKVPGIEAVTF 279
            SP QN         +  +L+A NVD VL++VRPYL+SDGGNV VV V +  G V L+L+GAC SC S+ TTMK+GIE+ LKE+FG  + ++V V +   + + +VE     L+ +R  +++ G  V V  ++ G+ ++ + GP S+  GV+  + EK P I  VTF
Sbjct:   45 SPNQNQSSPGLYSAKKFDLTASNVDLVLEDVRPYLISDGGNVDVVSVEN--GVVSLKLQGACESCPSSTTTMKMGIERVLKEKFGDSIKDIVQVYDDDQSRETTVEAVNNHLEILRPAIKNYGGSVQVLSVEAGDCVVEYFGPESIGSGVKAAIKEKFPDILNVTF 208          
BLAST of Gcaud9837.t1 vs. uniprot
Match: A0A5J5C0X6_9ASTE (NifU domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C0X6_9ASTE)

HSP 1 Score: 134 bits (338), Expect = 4.200e-35
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 0
Query:  132 ELSAGNVDAVLDEVRPYLVSDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGSQLNEVVSVNTQTTTDLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVILSFAGPNSLRHGVEKTLMEKVPGIEAVTF 279
            ELS  NVD VL++VRPYL+SDGGNV VV V    G + L+L+GAC SC S+ TTMK+GIE+ LKE+FG  + ++  VN    ++ ++E     LD +R  +++ G  V V  ID G+ I+ + GP S+  G++  + EK P I  V F
Sbjct:   62 ELSPANVDMVLEDVRPYLISDGGNVDVVSVED--GVISLKLQGACGSCPSSTTTMKMGIERVLKEKFGDAVKDIRQVNDDQISETTIEAVNGHLDILRPAIKNYGGSVEVLSIDGGDCIVKYVGPESIGSGIKAAIKEKFPDIVNVAF 207          
The following BLAST results are available for this feature:
BLAST of Gcaud9837.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1P1_9FLOR3.090e-12767.97NifU-like protein 1, chloroplastic n=1 Tax=Gracila... [more]
R7QMT6_CHOCR6.080e-8747.89Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S4NVX3_GUITH2.330e-4433.66Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A1X6PEC1_PORUM2.120e-3750.34NifU domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7S4B0G1_CHRCT4.570e-3733.09Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A2P2MRC8_RHIMU6.900e-3641.52Uncharacterized protein MANES_05G012600 n=1 Tax=Rh... [more]
A0A6S9FDF6_HETAK1.040e-3534.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A022S238_ERYGU2.300e-3545.03NifU domain-containing protein n=1 Tax=Erythranthe... [more]
A0A1S2XVS6_CICAR3.070e-3541.57nifU-like protein 1, chloroplastic n=1 Tax=Cicer a... [more]
A0A5J5C0X6_9ASTE4.200e-3544.59NifU domain-containing protein n=1 Tax=Nyssa sinen... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001075NIF system FeS cluster assembly, NifU, C-terminalPFAMPF01106NifUcoord: 222..277
e-value: 1.4E-5
score: 25.2
coord: 138..200
e-value: 4.5E-20
score: 71.6
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 215..279
e-value: 1.8E-9
score: 39.6
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 130..214
e-value: 9.6E-23
score: 82.0
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 137..203
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 218..278
NoneNo IPR availablePANTHERPTHR11178IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATEDcoord: 123..279
NoneNo IPR availablePANTHERPTHR11178:SF15NIFU-LIKE PROTEIN 1, CHLOROPLASTICcoord: 123..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1288_length_11797_cov_4.425765contigNODE_1288_length_11797_cov_4.425765:7824..8666 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9837.t1Gcaud9837.t1Gracilaria caudata M_176_S67 malemRNANODE_1288_length_11797_cov_4.425765 7824..8666 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9837.t1 ID=Gcaud9837.t1|Name=Gcaud9837.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
LFLAATQEQQICGVYAVLDADKEPVYIGMSRNVYDSLETHYRNYSELVCY
VKVMTFAIPMVREMKLVIDSWVLDNEVTPEGNADGWPESDSQLAEQARHI
GDVGEIQPASGTIVSPFQNDPLANTTKKELLELSAGNVDAVLDEVRPYLV
SDGGNVSVVQVNSKTGKVVLELEGACSSCASAATTMKLGIEKALKERFGS
QLNEVVSVNTQTTTDLSVEVCEKALDPIRQTLRSLGADVSVTEIDEGEVI
LSFAGPNSLRHGVEKTLMEKVPGIEAVTFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001075NIF_FeS_clus_asmbl_NifU_C
IPR034904FSCA_dom_sf