Gcaud9835.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9835.t1
Unique NameGcaud9835.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length285
Homology
BLAST of Gcaud9835.t1 vs. uniprot
Match: A0A2V3J3C7_9FLOR (Translation initiation factor eIF-2B subunit delta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3C7_9FLOR)

HSP 1 Score: 428 bits (1101), Expect = 5.810e-148
Identity = 219/284 (77.11%), Postives = 250/284 (88.03%), Query Frame = 0
Query:    1 MPSLADLPTTSTHSQSIDRPFRTTLRALRHITD-DPRETINRHISSVFPYEVSVRNPTLRAQRDAVQAAVTSHAQNDDSLYQVATTAMDSFLAVRINGARAKVSAFFDLMCRDRQWSHIAVFSGSTVVEACFLALNYPTKRLTVIDSAPDYPGRALASRLASQTSAFVRYATLSAASKALDSAHILVIGAKEVCLNGTVLARRGAGVLVQMARENGLPVVVATQAVKYSDRMLVARAADGDVIKPSEISAVITELDTAQWGVSDAPEVLRRVSEIEAHRVGVSP 283
            MPSLA+  TTSTHSQS D PFRT+L ALRH  + DPR TI RH+ S+FPYE + RNPTLRAQRDAV AAV++  +ND SLY VATTAMD+FLAVRINGARAKVSAFFD  CR+RQWSH+AV +GSTV EACFLALNYP+KRLTVID+AP+YPGR LA+RLASQTSA VRYATLSAA++ALDS H+LVIGAKEVCLNGTVLA RGAGVL  MAREN + VVVATQAVKYSDRML++R+ DGDVI P+EI+AV+TELDTAQW VS+APEVLRR+++ EAHRVGVSP
Sbjct:   98 MPSLAEATTTSTHSQSFDLPFRTSLLALRHSNNSDPRATILRHLESIFPYEAAARNPTLRAQRDAVHAAVSAQPKNDASLYDVATTAMDAFLAVRINGARAKVSAFFDSFCRERQWSHVAVLAGSTVAEACFLALNYPSKRLTVIDTAPNYPGRTLAARLASQTSANVRYATLSAAARALDSVHVLVIGAKEVCLNGTVLAERGAGVLANMARENAVQVVVATQAVKYSDRMLISRSPDGDVINPTEIAAVVTELDTAQWPVSEAPEVLRRLNDQEAHRVGVSP 381          
BLAST of Gcaud9835.t1 vs. uniprot
Match: R7QLY5_CHOCR (Translation initiation factor eIF2B, subunit delta n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLY5_CHOCR)

HSP 1 Score: 197 bits (502), Expect = 1.360e-59
Identity = 109/209 (52.15%), Postives = 146/209 (69.86%), Query Frame = 0
Query:   62 RDAVQAAVTSHAQNDDSLYQVATTAMDSFLAVRINGARAKVSAFFDLMCRDRQWSHIAVFSGSTVVEACFLALNYPTKRLTVIDSAPDYPGRALASRLASQTSAFVRYATLSAASKALDSAHILVIGAKEVCLNGTVLARRGAGVLVQMARENGLPVVVATQAVKYSDRMLVARAADG-DVIKPSEISAVITELDTAQWGVSDAPEVLR 269
            RDAVQ  + +   +D  LYQVA  A+D+F+ VR++GARAK SAFFD + R+R W   AVF+GSTV E  FLA+N   K+LTVID AP Y GR +A RLA+ T A VRY  L    K L+    ++IGA+EV +NG VLA  GA ++VQ+ARE G+ VVV TQAVK+S+ M+V  +  G DVI+P EI  ++TE++T+ +  SDAP+VL+
Sbjct:    2 RDAVQLQLAA-CDDDHILYQVALAALDAFVTVRVHGARAKTSAFFDKLSRERYWDSFAVFAGSTVAEEAFLAINI-RKQLTVIDVAPQYEGRGVAKRLAAATGASVRYGLLGNCRKLLEGVDAVIIGAEEVAMNGCVLASPGASIVVQIARELGVSVVVTTQAVKFSEGMIVDWSYAGYDVIRPHEILTIVTEMNTSAYSASDAPDVLK 208          
BLAST of Gcaud9835.t1 vs. uniprot
Match: M1VHY2_CYAM1 (Eukaryotic translation initiation factor eIF-2B delta subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VHY2_CYAM1)

HSP 1 Score: 69.3 bits (168), Expect = 1.030e-9
Identity = 64/240 (26.67%), Postives = 110/240 (45.83%), Query Frame = 0
Query:   20 PFRTTLRALRHITDDPRE---TINRHISSVF---PYEVSVRNPTLRAQ-RDAVQAAVTSHAQNDDSLYQVATTAMDSFLAVRINGARAKVSAFFDLMC-RDRQWSHIAVFSGSTVVEACFLALNYPTKR---LTVIDSAPDYPGRALASRLASQTSAFVRYATLSAASKALDSAHILVIGAKEVCLNGTVLARRGAGVLVQMARENGLPVVVATQAVKYSDRMLVARAADGDVIKPSEIS 248
            P + +      IT+  RE    +NRHI  +    P  +++ N     + R  +QA   S  +    L Q     +D+F+  R+  A   +   FD    R R    +  +  S +VE+  L      KR   + V+D+ P + G AL  RL     A   Y  L  A   +  A++L++GA+    NG VLA  G   +  +A++  +PV VA +++K+S+R+L+      ++  P E++
Sbjct:  122 PVKVSDSGTESITETRRELERALNRHIQFLVDSRPLSIAMGNAVRFVKSRLGIQALAQSFLE----LQQQIINDIDAFIEERVVLA---LETIFDAGADRIRDGDVVMTYDASFLVESILLRAVQKHKRRFRVIVLDARPRHRGCALVHRLLQGGVAQCTYGLLQGAPMLVQEANLLLLGAEACFSNGAVLAAAGTASVASLAKQERIPVAVACESLKFSERVLIDSICLNELGNPDELT 354          
BLAST of Gcaud9835.t1 vs. uniprot
Match: R4XDA4_TAPDE (Uncharacterized protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XDA4_TAPDE)

HSP 1 Score: 64.7 bits (156), Expect = 3.780e-8
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0
Query:  118 IAVFSGSTVVEACFL-ALNYPTKRLTVIDSAPDYPGRALASRLASQTSAFVRYATLSAASKALDSAHILVIGAKEVCLNGTVLARRGAGVLVQMARENGLPVVVATQAVKYSDRMLVARAADGDVIKPSEISAVITELDTAQ 258
            I V++ ST+VEA  L A +    ++ V+DS P + GR +   LA +      Y  LSA    +++   + +GA  V  NG V +R G  ++   A E+ +PV+VA +  K+SDR+ +      ++   SEI     E   A+
Sbjct:  242 ILVYAHSTIVEAILLEAFSSVPFKVIVVDSRPKFEGRLMVRNLA-KAGIPCTYVMLSAIGYVMETVDKVFLGAHTVLANGAVYSRAGTALVAMTASEHHVPVIVACETYKFSDRVQLDSFVTNELGLTSEIDTPEREQSAAE 382          
BLAST of Gcaud9835.t1 vs. uniprot
Match: G0UZF4_TRYCI (Uncharacterized protein TCIL3000_11_1570 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0UZF4_TRYCI)

HSP 1 Score: 59.7 bits (143), Expect = 1.950e-6
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 0
Query:   59 RAQRDAVQAAVTSHAQNDDSLYQVATTAMDSFLAVRINGARAKVSAFFDLMCRDRQWSHIA------VFSGSTVVEACFL-ALNYPT----KRLTVIDSAPDYPGRALASRLASQTSAFVRYATLSAASKALDSAHILVIGAKEVCLNGTVLARRGAGVLVQMARENGLPVVVATQAVKY 227
            R +  +V     S  + + S Y+  T+  D  L V ++    ++      +  DR  SH++      VF  S+ VE   L A N P      ++ V+DSAP Y GRALA+RL S +   V Y  ++A    +     + IGA  V  NG V +R G  V+V  A++   PV+  ++++K+
Sbjct:  266 RERSTSVSTTSFSRDRIETSFYE--TSPRDMALRV-LSAIEKELQLSIKSIVEDRSASHLSSNDTILVFGRSSTVELILLSAANNPRLIVKPKVIVVDSAPLYEGRALATRL-SCSGLNVTYGLITACCTLMPRCTRVFIGAAAVLQNGDVFSRCGTAVVVSSAKQFRKPVLCFSESIKF 441          
BLAST of Gcaud9835.t1 vs. uniprot
Match: A0A316Z3V2_9BASI (Nagb/rpia/CoA transferase-like protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316Z3V2_9BASI)

HSP 1 Score: 58.9 bits (141), Expect = 3.190e-6
Identity = 45/165 (27.27%), Postives = 76/165 (46.06%), Query Frame = 0
Query:   87 MDSFLAVRINGARAKVSAFFDLMCRDRQWSHIAVFSGSTVVEACFLALNYPTKRLTVI--DSAPDYPGRALASRLASQTSAFVRYATLSAASKALDSAHILVIGAKEVCLNGTVLARRGAGVLVQMARENGLPVVVATQAVKYSDRMLVARAADGDVIKPSEISA 249
            +D F+  RI  A   +++         +   +  F  S+VVEA  L       R  VI  D+ P   GR L + L +       YA L++    +  A ++++G   V  NG + AR G   +  +A E  +PVVVA Q  K+S+R+++   +  +   P+ + A
Sbjct:  233 IDHFIRDRITHAARTIASSLAADRIRAEGEVVLTFGRSSVVEAALLEAKRKGSRFEVIVVDAQPLCEGRRLLATLLAHDVPCT-YALLTSLPTLMPRASLVLLGTAAVLANGALYARAGTAAVAMLAAERQVPVVVACQTYKFSERIMLDALSGNEAGDPTAMLA 396          
The following BLAST results are available for this feature:
BLAST of Gcaud9835.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J3C7_9FLOR5.810e-14877.11Translation initiation factor eIF-2B subunit delta... [more]
R7QLY5_CHOCR1.360e-5952.15Translation initiation factor eIF2B, subunit delta... [more]
M1VHY2_CYAM11.030e-926.67Eukaryotic translation initiation factor eIF-2B de... [more]
R4XDA4_TAPDE3.780e-830.99Uncharacterized protein n=1 Tax=Taphrina deformans... [more]
G0UZF4_TRYCI1.950e-630.00Uncharacterized protein TCIL3000_11_1570 n=1 Tax=T... [more]
A0A316Z3V2_9BASI3.190e-627.27Nagb/rpia/CoA transferase-like protein n=1 Tax=Til... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000649Initiation factor 2B-relatedPFAMPF01008IF-2Bcoord: 43..235
e-value: 4.2E-12
score: 45.9
IPR042529Initiation factor 2B-like, C-terminalGENE3D3.40.50.10470coord: 98..256
e-value: 1.9E-16
score: 62.1
NoneNo IPR availablePANTHERPTHR10233TRANSLATION INITIATION FACTOR EIF-2Bcoord: 80..232
NoneNo IPR availablePANTHERPTHR10233:SF14TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTAcoord: 80..232
IPR037171NagB/RpiA transferase-likeSUPERFAMILY100950NagB/RpiA/CoA transferase-likecoord: 38..254

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1288_length_11797_cov_4.425765contigNODE_1288_length_11797_cov_4.425765:2904..3758 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9835.t1Gcaud9835.t1Gracilaria caudata M_176_S67 malemRNANODE_1288_length_11797_cov_4.425765 2904..3758 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9835.t1 ID=Gcaud9835.t1|Name=Gcaud9835.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MPSLADLPTTSTHSQSIDRPFRTTLRALRHITDDPRETINRHISSVFPYE
VSVRNPTLRAQRDAVQAAVTSHAQNDDSLYQVATTAMDSFLAVRINGARA
KVSAFFDLMCRDRQWSHIAVFSGSTVVEACFLALNYPTKRLTVIDSAPDY
PGRALASRLASQTSAFVRYATLSAASKALDSAHILVIGAKEVCLNGTVLA
RRGAGVLVQMARENGLPVVVATQAVKYSDRMLVARAADGDVIKPSEISAV
ITELDTAQWGVSDAPEVLRRVSEIEAHRVGVSPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000649IF-2B-related
IPR042529IF_2B-like_C
IPR037171NagB/RpiA_transferase-like