Gcaud9830.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9830.t1
Unique NameGcaud9830.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length202
Homology
BLAST of Gcaud9830.t1 vs. uniprot
Match: A0A2V3IXH2_9FLOR (Cullin-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXH2_9FLOR)

HSP 1 Score: 173 bits (439), Expect = 6.550e-51
Identity = 107/215 (49.77%), Postives = 135/215 (62.79%), Query Frame = 0
Query:   12 KRQRFSLNSSGSSSNFEIPSTSTDRNGNVRIQLPSVRQILAAAPI----------PCPL---------PAVHPLHRP------HRPTPSAEPNCIKQANGTKGNSYIHLNKDFKSRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            KRQR S ++   +    + +       + ++QLPSVRQILA+API          P PL         P + PL R       H P  +++   +K   G  G S+I LN +F+S +RKI+FP+  +R+ GTK+ +   NVVMDRNTQ+DAVLVR+MKSRKQA Y  L AEVISALSKQHFMPDPK+IKKRLE LIDQEYI RDE+D K Y YN 
Sbjct:   31 KRQRISSSTQNPALEVSLTTNIGAIRSDNKVQLPSVRQILASAPISDTLLVVPSLPRPLQSQKTQSSPPQLQPLQRLCSQPKLHSPLVTSQREIVKNDMGAPG-SHICLNDNFRSDYRKIVFPTMSARMTGTKSTIAVKNVVMDRNTQVDAVLVRIMKSRKQANYSALSAEVISALSKQHFMPDPKMIKKRLESLIDQEYITRDESDPKLYRYNV 244          
BLAST of Gcaud9830.t1 vs. uniprot
Match: R7Q374_CHOCR (CULLIN_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q374_CHOCR)

HSP 1 Score: 102 bits (255), Expect = 6.990e-22
Identity = 47/107 (43.93%), Postives = 78/107 (72.90%), Query Frame = 0
Query:   93 IHLNKDFKSRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTY 199
            +H+N  FKSR  +++ P+ + ++       ++ +VV+DR+T++DAVLV++MK++K+ T+  L   V+ AL+   F+PDP+LIKKRLERLI+QEY+ RD++D + Y Y
Sbjct:  569 LHINLGFKSRLHRVVVPASIPKVASANTTTSKKHVVVDRSTRVDAVLVKIMKTKKELTHAALNNLVVEALAPT-FLPDPRLIKKRLERLIEQEYVERDKDDPRLYRY 674          
BLAST of Gcaud9830.t1 vs. uniprot
Match: A0A7S1EQY9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQY9_9RHOD)

HSP 1 Score: 91.7 bits (226), Expect = 5.870e-18
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0
Query:   94 HLNKDFKSRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            +LN DF  +  ++I PS   R    +AK  +  V MDR  QIDA +VR++KSR++ T+ EL +E+I+ LS   F PD KLIKKRLE LI+ EYI RD  D   Y Y A
Sbjct: 1226 YLNADFTPKSVRLIVPSSTPRFVQREAKQAKKQVEMDRGVQIDAAIVRILKSRRRLTHTELVSELIAQLSST-FNPDIKLIKKRLEHLIESEYIERDTEDPSVYKYIA 1332          
BLAST of Gcaud9830.t1 vs. uniprot
Match: A0A5K1K6W2_9APHY (Glutamyl-tRNA synthetase (EC) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K6W2_9APHY)

HSP 1 Score: 84.0 bits (206), Expect = 2.530e-15
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 0
Query:   96 NKDFKSRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            N DFK   R +   S  S+    + K T+S++  DR   +DA +VRVMKS+K+ TY +L    I A+ K HF+PD  +IKKR+E L++QEY+ RDE+D  ++ Y A
Sbjct:  728 NGDFKDPRRVVHINSIQSKETAEETKRTQSSIEADRKHALDAAIVRVMKSKKELTYEQLKTATIEAV-KNHFVPDVGMIKKRIEGLVEQEYLRRDEDDQSRFFYVA 832          
BLAST of Gcaud9830.t1 vs. uniprot
Match: A0A3P7T8R8_9BILA (Cullin_Nedd8 domain-containing protein n=3 Tax=Spiruromorpha TaxID=2072716 RepID=A0A3P7T8R8_9BILA)

HSP 1 Score: 78.6 bits (192), Expect = 3.180e-15
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   95 LNKDFKSRFRKIIFPSGMSRINGT-KAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            +N  F S+  +I       R     + K TRS +  DR  +++A +VRVMK+RK+  +  L AEV   L K  FMP+P+LIKKR+E LI+++Y+ARD+ND + Y Y A
Sbjct:   28 VNDAFTSKLTRIKIQMVSGRAEAEPERKETRSRIDEDRKHEVEAAVVRVMKARKKLLHNVLVAEVTQQL-KHRFMPNPQLIKKRIESLIERDYLARDKNDHRCYEYVA 134          
BLAST of Gcaud9830.t1 vs. uniprot
Match: A0A146HHR4_9AGAR (CULLIN_2 domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HHR4_9AGAR)

HSP 1 Score: 83.2 bits (204), Expect = 4.540e-15
Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = 0
Query:   90 NSYIHLNKDFKSRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            N   H N+ F     +I   S  ++++  ++K T+S +  +R+  +DA +VR+MK++K+  +G L   VI A+ K HF PD   IK R+E+LIDQEY+ RDE++ +++ Y A
Sbjct:  623 NDVFHFNETFTDSLTRIHINSIQAKVSAEESKATQSAIDGERSASLDAAIVRIMKAKKEVMHGALVNAVIDAV-KNHFTPDVPAIKVRIEKLIDQEYMRRDESNQQKFIYVA 733          
BLAST of Gcaud9830.t1 vs. uniprot
Match: F2UL68_SALR5 (CULLIN_2 domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UL68_SALR5)

HSP 1 Score: 82.4 bits (202), Expect = 8.410e-15
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   66 LHRPHRPTPSAEPNCIKQANGTKG---NSYIHLNKDFKSRFRKIIFPSGMSR-INGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            LHR  +   S++   +K++  TK         +N+ F SR  KI  P  +S+     +AK T   V  DR  +++A +VRV+K+RKQ  Y ++  EV   L+K+ F P P LIKKRLE LID+E++ RD+ D   Y Y A
Sbjct:  605 LHRILQCLASSKVRLLKKSPPTKTIAETDAFSVNEKFSSRMVKIRIPQLVSKEATAAEAKDTMKKVTEDRKHEVEACIVRVLKNRKQLHYNDIVVEVTQQLAKR-FQPPPLLIKKRLEALIDREFVERDDKDRTLYRYLA 743          
BLAST of Gcaud9830.t1 vs. uniprot
Match: A0A6A5BXG9_NAEFO (CULLIN_2 domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BXG9_NAEFO)

HSP 1 Score: 82.0 bits (201), Expect = 1.140e-14
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 0
Query:   95 LNKDFKSRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            +N DF+S  R+I  P+ + ++   + +        +R   IDA LVR+MK+RK   Y EL  E I  LS  HF+PDPKLIKKR+E LI +EY+ RD  DS    Y A
Sbjct:  637 VNADFESPLRRIKIPNVVVQVTQQQKQEINQKAQEERKYVIDAALVRIMKARKVLKYQELMTETIKQLS-SHFLPDPKLIKKRVEDLIAREYLERDAKDSSTIQYVA 742          
BLAST of Gcaud9830.t1 vs. uniprot
Match: A0A7S1JE35_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JE35_9EUGL)

HSP 1 Score: 80.9 bits (198), Expect = 1.160e-14
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 0
Query:   96 NKDFKSRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            N DFKS+F K+     + +    +AK TR+ V  DR  Q+DAV+VRVMKSRK   + +L +EV   L K  F P P  IKKR+E LI++EY+ R +    +Y Y A
Sbjct:  221 NSDFKSKFIKVKISQMVLKETEEEAKETRTKVDEDRKWQLDAVIVRVMKSRKTMEHRQLVSEVFELL-KGRFQPSPDDIKKRIESLIEREYMERSQQSRSKYNYLA 325          
BLAST of Gcaud9830.t1 vs. uniprot
Match: E4X7F3_OIKDI (CULLIN_2 domain-containing protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X7F3_OIKDI)

HSP 1 Score: 81.6 bits (200), Expect = 1.570e-14
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 0
Query:   88 KGNSYIHLNKDFKSRFRKI-IFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQATYGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYNA 201
            K    I +N +F S+  K+ I  +  S  N  + K TR+ V  DR  +I+A +VR+MKSRK   + +L AE I  L K  F P P +IKKR+E LI++EY+ RD  D K Y Y A
Sbjct:  676 KKTDVISVNDNFVSKLYKVKILSAAKSGENEVETKETRTKVDEDRRHEIEAAIVRIMKSRKNLNHNQLVAECIDQL-KARFSPTPIVIKKRIEALIEREYLTRDNGDRKLYKYVA 789          
The following BLAST results are available for this feature:
BLAST of Gcaud9830.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXH2_9FLOR6.550e-5149.77Cullin-3 n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
R7Q374_CHOCR6.990e-2243.93CULLIN_2 domain-containing protein n=1 Tax=Chondru... [more]
A0A7S1EQY9_9RHOD5.870e-1848.15Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5K1K6W2_9APHY2.530e-1543.40Glutamyl-tRNA synthetase (EC) n=1 Tax=Ganoderma bo... [more]
A0A3P7T8R8_9BILA3.180e-1542.59Cullin_Nedd8 domain-containing protein n=3 Tax=Spi... [more]
A0A146HHR4_9AGAR4.540e-1537.50CULLIN_2 domain-containing protein n=1 Tax=Mycena ... [more]
F2UL68_SALR58.410e-1538.57CULLIN_2 domain-containing protein n=1 Tax=Salping... [more]
A0A6A5BXG9_NAEFO1.140e-1443.93CULLIN_2 domain-containing protein n=2 Tax=Naegler... [more]
A0A7S1JE35_9EUGL1.160e-1444.34Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
E4X7F3_OIKDI1.570e-1442.61CULLIN_2 domain-containing protein n=2 Tax=Oikople... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019559Cullin protein, neddylation domainSMARTSM00884Cullin_Nedd8_2coord: 127..195
e-value: 2.8E-25
score: 100.0
IPR019559Cullin protein, neddylation domainPFAMPF10557Cullin_Nedd8coord: 130..193
e-value: 3.0E-22
score: 78.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 96..201
e-value: 5.8E-26
score: 92.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..85
NoneNo IPR availablePANTHERPTHR11932:SF123CULLIN 4, ISOFORM Acoord: 90..197
IPR045093CullinPANTHERPTHR11932CULLINcoord: 90..197
IPR016157Cullin, conserved sitePROSITEPS01256CULLIN_1coord: 174..201
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 119..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_155_length_42800_cov_4.630125contigNODE_155_length_42800_cov_4.630125:38421..39109 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9830.t1Gcaud9830.t1Gracilaria caudata M_176_S67 malemRNANODE_155_length_42800_cov_4.630125 38421..39109 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9830.t1 ID=Gcaud9830.t1|Name=Gcaud9830.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MRRNWGKNLQTKRQRFSLNSSGSSSNFEIPSTSTDRNGNVRIQLPSVRQI
LAAAPIPCPLPAVHPLHRPHRPTPSAEPNCIKQANGTKGNSYIHLNKDFK
SRFRKIIFPSGMSRINGTKAKVTRSNVVMDRNTQIDAVLVRVMKSRKQAT
YGELCAEVISALSKQHFMPDPKLIKKRLERLIDQEYIARDENDSKQYTYN
A*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019559Cullin_neddylation_domain
IPR036388WH-like_DNA-bd_sf
IPR045093Cullin
IPR016157Cullin_CS
IPR036390WH_DNA-bd_sf