Gcaud983.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud983.t1
Unique NameGcaud983.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length347
Homology
BLAST of Gcaud983.t1 vs. uniprot
Match: A0A2V3IMC1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 154 bits (389), Expect = 3.010e-40
Identity = 103/344 (29.94%), Postives = 175/344 (50.87%), Query Frame = 0
Query:    1 MTVIPLKAQFVSLIITLVLALSEILTLYCLGTANAISESSRLRKGGHVNLKSHLRRSRLFTVICLLLFIAFEAVVSNFSDPVQTPVIASHDCILVDTLTRENDTQDLDNRVDIIESQCAKL-DNTSFTQMGGNVSMTSNNFTCSDTPIFKVEFAWIGQFKRVTGAGKTIGCHENNCVLTFKEGDFTYSSFVFDVLFLENMTSTAVETD--FIRTLVFFDTEPLLEVIAERKAKALAEDRVTDPYEARRRMFAGSRYTKCPITVSTVQETLIPNAILAFVAAVFALSVFFSMVCLGTRRIRFAKLSDPLQWACRTFRNGEHQRILTSPVVRSEKSEEGIVFVVDD 341
            M  I LKAQ+VSLIIT++  + E++ +  L T N+I E   L++   + ++++  R+++  +I  LLF+  E +VS FSDPVQ  +  S  C+ VD + R    Q      D IE +C  L  N ++ ++G NVS++     CS    +  +     + K++  +   + C    CV  F++ + TY S       +  + S AV+T+  F++T + FD+  +L V A R   A  E  V DP+E RRR+F GS    CP     +  T +P  +L  +   + +++ F ++CL  RR  F  + +PL WA +  +  + + +   PVV     +E +   V +
Sbjct:    1 MVTIALKAQYVSLIITIISFICEVIFIAALQTVNSIRECQLLKQKKQLRVRNYRHRAKIIALISALLFLGLEIIVSFFSDPVQLELFQSEPCVSVDNVLRLQGPQGEFREADFIEGKCQTLRGNFNYVRVG-NVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGETCVFVFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQ-VNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVD-EAVKHDPVVTCATEDEALALYVSE 341          
BLAST of Gcaud983.t1 vs. uniprot
Match: A0A2V3J6F3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 120 bits (302), Expect = 8.380e-28
Identity = 94/318 (29.56%), Postives = 150/318 (47.17%), Query Frame = 0
Query:    1 MTVIPLKAQFVSLIITLVLALSEILTLYCLGTANAISESSRLRKGGHVNLKSHLRRSRLFTVICLLLFIAFEAVVSNFSDPVQTPVIASHDCILVDTLTRENDTQDLDNRVDIIESQCAKLDNTSFTQMGGNVSMTSNNFTCSDTPIFKVEFAWIGQFKRVTGAGKTIGCHENN-----CVLTFKEGDFTYSSFVFDVLFLENMTSTAVETDFIRTLVFFDTEPLLEVIAERKAKALAEDRVTDPYEARRRMFAGSRYTKCPITVSTVQETLIPNAILAFVAAVFALSVFFSMVCLGTRRIRFAKLSDPLQWACRTFR 313
            M +I LKA FVS+I+T++  L+E+  L  L   N + E  +L++G  V ++ HLRR+RL +V+CL  F A E V S ++DPV    I  H+CI      +++       R   I  +C +LDN + TQ GGN S  +    CS   ++        +      A    GC         CV   + G+ +  S  F   FL+ ++        I T + F     + + A R   A  ++ +  P   RR +++G+   +C   V     T +P A++  +AAV+A+++         RR  F KL DP+ WA R+ R
Sbjct:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDPVNNVQIEIHECITASNSVKDSGDSTQFLRASDILVECRRLDNGTITQFGGNFSSRTQQVECSTEAMYTHPLG--DETSEEIVADVPFGCVSGGEEGAACVFVQQRGNLSLISAPF---FLDELSILPDTLPHIITELHFTPPSNVSLFATRATNAFLQN-IQGPSALRRIIYSGASEDQCAFPVVRGSATTVPLAMIVALAAVWAVALAMFASVFALRRGVFFKLDDPMHWATRSVR 312          
BLAST of Gcaud983.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 107 bits (266), Expect = 2.420e-22
Identity = 110/357 (30.81%), Postives = 162/357 (45.38%), Query Frame = 0
Query:    1 MTVIPLKAQFVSLIITLVLALSEILTLYCLGTANAISESSRLRKGGHVNLKSHLRRSRLFTVICLLLFIAFEAVVSNFSDPVQTPVIASHDCILVDTLT-RENDTQDLDNRVDIIESQCAKLDNTSFTQMGGNVSMTSNN---FTCSDTPIFKVEFAWIGQFK--RVTGAGKTIGCHENNCVL-TFKEGD-------------FTYSSFVFDVLFLEN---------MTSTAVETDFIRTLVFFDTEPLLEVIAERKAKALAEDRVTDPYEARRRMFAGSRYTKCPITVSTVQETLIPNAILAFVAAVFALSVFFSMVCLGTRRIRFAKLSDPLQWACRTFRNGEHQRILTSPVVRS 328
            M  IPLK+QFVSLI+TL+  L+E+     L   N  SE   LRKG  V+++ H  R++   V+ +++FI  E ++S FSDP       + +C+ VD +  RE  T D  N  D I  +C  +    F Q  GN S+  N      C    +++       QF    VT  G T       C+L T   G+                +S  F  ++L           + +  V   F+ T V ++T  L    A R  +A  +D VTDP E R+R+F G    KC         T +P  ++  + A + LS       L  RR  F  +SDPL WA RT+R+ + + I+ +PVV S
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDT-NDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKD-VTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHID-EPIVGNPVVTS 354          
BLAST of Gcaud983.t1 vs. uniprot
Match: A0A2V3IQG3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQG3_9FLOR)

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-16
Identity = 83/316 (26.27%), Postives = 139/316 (43.99%), Query Frame = 0
Query:    4 IPLKAQFVSLIITLVLALSEILTLYCLGTANAISESSRLRKGGHVNLKSHLRRSRLFTVICLLLFIAFEAVVSNFSDPVQTPVIASHDCILVDTLTRENDTQDL-DNRVDIIESQCAKLDNTSFTQMGGNVSMTSNNFTCSDTPIFKVEFAWIGQFKRVTGAGKTIGCHENNCVLTFKEGDFTYSSFVF-----DVLFLENM----TSTAVETDFIRTLVFFDTEPLLEVIAERKAKALAEDRVTDPYEARRRMFAGSRYTKCPITVSTVQETLIPNAILAFVAAVFALSVFFSMVC-LGTRRIRFAKLSDPLQWA 308
            IP++AQ VSL++TLV   +E+  L+   T   + E+ +L +   + L  H  R R+   + LL F+A E + S  +           DC+ +  +T+ +D     D R + I  +C   +   F Q  G VS+  ++ TC D P +    +   Q  R + +  T+ C +N   L  +     +   VF     D L++       +    E  FI T V  D  P +  + +R      +D  T+    R  MF     T+C  +    +   +P+ IL  VAA++ L++  ++   L TR+     LSDP  WA
Sbjct:    3 IPIRAQIVSLVVTLVFVATELCVLWVAKTITVLFETQKLCRKVTIGLYQHCLRRRVTAAVVLLSFLALETLTSTLTQTSFRDEKVQRDCLKLVPITQTSDPNVFHDQRSESILYRCLNFNRDIFEQRLGGVSLEPSDVTCEDQPYYSYNNS---QRVRRSTSSATMTC-KNISSLNLERETVVHEWCVFHEVERDTLYMSAQPFPESEAEEEGSFIVTKVHTDITPFVPKVVDRYLHFFVKDSETEELHLRGVMFTDLVETQCSFSSGKTEGVTVPDFILVTVAALWLLAILGAIFTKLLTRKKTLIYLSDPFFWA 314          
The following BLAST results are available for this feature:
BLAST of Gcaud983.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IMC1_9FLOR3.010e-4029.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J6F3_9FLOR8.380e-2829.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT05_9FLOR2.420e-2230.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IQG3_9FLOR3.300e-1626.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..75
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 76..270
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 292..346
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 271..291
NoneNo IPR availableTMHMMTMhelixcoord: 271..293
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 59..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2253_length_6299_cov_4.480026contigNODE_2253_length_6299_cov_4.480026:3972..5012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud983.t1Gcaud983.t1Gracilaria caudata M_176_S67 malemRNANODE_2253_length_6299_cov_4.480026 3972..5012 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud983.t1 ID=Gcaud983.t1|Name=Gcaud983.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MTVIPLKAQFVSLIITLVLALSEILTLYCLGTANAISESSRLRKGGHVNL
KSHLRRSRLFTVICLLLFIAFEAVVSNFSDPVQTPVIASHDCILVDTLTR
ENDTQDLDNRVDIIESQCAKLDNTSFTQMGGNVSMTSNNFTCSDTPIFKV
EFAWIGQFKRVTGAGKTIGCHENNCVLTFKEGDFTYSSFVFDVLFLENMT
STAVETDFIRTLVFFDTEPLLEVIAERKAKALAEDRVTDPYEARRRMFAG
SRYTKCPITVSTVQETLIPNAILAFVAAVFALSVFFSMVCLGTRRIRFAK
LSDPLQWACRTFRNGEHQRILTSPVVRSEKSEEGIVFVVDDLKPVS*
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