Gcaud9826.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9826.t1
Unique NameGcaud9826.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length693
Homology
BLAST of Gcaud9826.t1 vs. uniprot
Match: A0A2V3J078_9FLOR (Armadillo repeat-containing protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J078_9FLOR)

HSP 1 Score: 696 bits (1796), Expect = 3.300e-242
Identity = 381/689 (55.30%), Postives = 473/689 (68.65%), Query Frame = 0
Query:    9 DENIEIVFCRKMSSRKRHGSRYPSEKGANISVSTREADRASYSSLLSHKDSSALDRIRSAAIQRETTNEFQEDFEKPKQLLKMTNLSSTTTKTENGVTAEQEKVEEVQVSKEPSTP----QSEIPAQAPLTSIISNADGDTIVSEISGLGPEDLDVFRKQGGVDQCNTIITQTVESMESNPEDTRTLRNGLSSLTNLCTDERSRTFIGNNRGIKIVIETLAGHGEDLAIQELGMRFLARVSMSHVENKLQVGHRSGINAILLNFSRQERVTSALFESCCEALHSVCYKCEFNQMLAGSLQAPVLLVNGLEKWRNDVVALEQCLLALNTLAKNNSQNTIMICESGLGRTVVSIMEQYAAYLNIQTACLQLCCELLGRNPLAREQLGKAGIVECIEGGLLKHAVAKKYIILSCNSLRYLAFTATNRQRIAECAIIPLLTASLERWNKCIDVVVSILPAFANATYDNRRNKYAAARNGGIATMISLLDIHYSSASICEYTCRVLRNISDGNVQTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESYSHVIKSSDIEEHLSQVLKTHKGCAGVERQVMFLQATLKRMPKTEPEKQNSTRDVWFRWLNRSEE-DECNGKLTRAASTWWFSSSRDNSLVYRESASSRGSTALRVGDTTLDAEDILKGEEIQKEVERLSNADSAVEY 692
            DE +E+VFCRK SS +R G + P       + ++ + +    +  L+  D+  L++    A  ++ T    E   +    L+ T++S TT + EN  +A   + +     +EP T     ++ IP QAPLTSI++ AD +TIVSE+S L PEDLD FRK GG   C TI+ Q +ES+ES+ +DTRTLR+G+SSL NLC+D  SRT IG + GIK  IE +  + ED+AIQELGMRFL  V  SH ENKLQVG R G+  IL N  R   +T+ LFE CC AL S+CY+CEFNQ+LA S +A  LL +GL +WRNDV ALE+CL AL TLA  N+QN  MI ESG   T+VS+MEQYAAYLNIQTACL++  E+L RN  +RE +G AG VE IEGGLLKH +AKK+I+LSC+ LRYLAFT+ NRQRIAECAI+PLLTASLERWNKC+DVVVSILPAFANATYDNRRNKYAAARNGG+AT++SL DIH S +SICEYTC+VLRN+SDG +QTK                                     + ++H+IK   +EEHL +VL+ H+G A VE+Q M LQATL RMP  E  KQNS R  W  W  R+ + DE +G LTRAAS+WWFS+SR+N L +RES SSRGSTALRVG+ TLDAEDIL GEEI K V RLS ADSAVEY
Sbjct:    2 DEGVEVVFCRKNSSWRRPGPQQPHNMCETQASTSTQMENKPPTKTLAQSDNGDLNQF---AENQKHTQASTECTGEANDCLQGTHISVTTAEDENVSSANWIQPD---CKQEPETESEVREAGIPTQAPLTSIVTQADAETIVSELSALSPEDLDAFRKHGGPPNCETIVAQVIESLESDVDDTRTLRSGISSLLNLCSDRDSRTCIGVSGGIKAAIEVMRQNREDIAIQELGMRFLEEVCSSHFENKLQVGQRGGMQVILRNIRRGSNLTAGLFEGCCGALRSLCYECEFNQLLAASQRAAPLLADGLARWRNDVHALEECLHALYTLASKNTQNASMIRESGACATIVSVMEQYAAYLNIQTACLEVAQEVLIRNTASREDMGAAGFVEAIEGGLLKHTMAKKFIVLSCSCLRYLAFTSANRQRIAECAIMPLLTASLERWNKCVDVVVSILPAFANATYDNRRNKYAAARNGGVATLVSLFDIHESCSSICEYTCKVLRNVSDGTIQTKRQCVRQDGILGVTRAMKYHLQVEGVQEHGCAMLINLFDGFNHLIKEYQMEEHLCKVLEMHQGVARVEQQAMHLQATLARMPTPEGTKQNSVRSGWLGWFGRNRDSDESSGTLTRAASSWWFSTSRENQLAHRESISSRGSTALRVGEITLDAEDILNGEEIDKAVARLSTADSAVEY 684          
BLAST of Gcaud9826.t1 vs. uniprot
Match: A0A5J4YH29_PORPP (Protein aardvark n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YH29_PORPP)

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-7
Identity = 66/296 (22.30%), Postives = 122/296 (41.22%), Query Frame = 0
Query:  351 RTVVSIMEQYAAYLNIQTACLQLCCELLGRNPLAREQLGKAGIVECIEGGLLKHAVAKKYIILSCNSLRYLAFTATNRQRIAECAIIPLLTASLERWNKCIDVVVSILPAFANATYDNRRNKYAAARNGGIATMISLLDIHYSSASICEYTCRVLRNISDGNVQTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESYSHVIKSSDIEEHLSQVLKTHKGCAGVERQVMFLQATLKRMPKTEPEKQNSTRDVWFRWLNRSEEDECNGKLTRAASTWWFSSSRDNSLVY 646
            R ++  MEQ      I+T C+  C       P+ ++ +G+ G +E I   + +       +   C +LRYLAFT  NR R+A C  + ++   + R        ++ L A +N  Y + RN+  A   G + T+  ++ +H+ ++S+ E  CRV RN++    ++K                                     +SY+  +    +E+HL  +L+  +    + +Q   L   ++RM + +  K   ++  +       +    +G  T AAS    S SR  S  Y
Sbjct:  501 RLLMQFMEQ-----AIRTLCVLSC----DSAPM-QQHIGEMGGIEVIAAAMRQFDSQITLLAEGCITLRYLAFTKDNRDRMARCRAVEVIKMCIVRLQIEPLPTLNALLALSNCLYLSPRNEKLAVECGCVETVAGVMKLHHLNSSVQETGCRVFRNLAFQVRESKKSAVRSVMADTLISTLISFPEIHGIQMHGCAALVNLTDSYAKDLLGQRLEDHLDGILRRFQDDPELAQQARIL---IERMSQAQFAKMQKSKSSFITRAFSKQSSSYSG--TGAASGDASSRSRSGSKRY 781          
The following BLAST results are available for this feature:
BLAST of Gcaud9826.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J078_9FLOR3.300e-24255.30Armadillo repeat-containing protein 6 n=1 Tax=Grac... [more]
A0A5J4YH29_PORPP1.200e-722.30Protein aardvark n=2 Tax=Porphyridium purpureum Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 337..379
e-value: 490.0
score: 0.1
coord: 424..466
e-value: 260.0
score: 2.3
coord: 468..510
e-value: 0.0056
score: 25.9
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 479..509
score: 8.5924
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 408..595
e-value: 1.0E-15
score: 59.8
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 105..407
e-value: 5.6E-15
score: 57.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..129
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 429..589
coord: 122..383
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 161..558

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_155_length_42800_cov_4.630125contigNODE_155_length_42800_cov_4.630125:29259..31337 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9826.t1Gcaud9826.t1Gracilaria caudata M_176_S67 malemRNANODE_155_length_42800_cov_4.630125 29259..31337 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9826.t1 ID=Gcaud9826.t1|Name=Gcaud9826.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=693bp
MATAETATDENIEIVFCRKMSSRKRHGSRYPSEKGANISVSTREADRASY
SSLLSHKDSSALDRIRSAAIQRETTNEFQEDFEKPKQLLKMTNLSSTTTK
TENGVTAEQEKVEEVQVSKEPSTPQSEIPAQAPLTSIISNADGDTIVSEI
SGLGPEDLDVFRKQGGVDQCNTIITQTVESMESNPEDTRTLRNGLSSLTN
LCTDERSRTFIGNNRGIKIVIETLAGHGEDLAIQELGMRFLARVSMSHVE
NKLQVGHRSGINAILLNFSRQERVTSALFESCCEALHSVCYKCEFNQMLA
GSLQAPVLLVNGLEKWRNDVVALEQCLLALNTLAKNNSQNTIMICESGLG
RTVVSIMEQYAAYLNIQTACLQLCCELLGRNPLAREQLGKAGIVECIEGG
LLKHAVAKKYIILSCNSLRYLAFTATNRQRIAECAIIPLLTASLERWNKC
IDVVVSILPAFANATYDNRRNKYAAARNGGIATMISLLDIHYSSASICEY
TCRVLRNISDGNVQTKRLCVRQDGISGVISTMKNHLYVEGVHEHGCAMLI
NLLESYSHVIKSSDIEEHLSQVLKTHKGCAGVERQVMFLQATLKRMPKTE
PEKQNSTRDVWFRWLNRSEEDECNGKLTRAASTWWFSSSRDNSLVYRESA
SSRGSTALRVGDTTLDAEDILKGEEIQKEVERLSNADSAVEY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold