Gcaud9824.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9824.t1
Unique NameGcaud9824.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length134
Homology
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BLAST of Gcaud9824.t1 vs. uniprot
Match: A0A2V3IXF2_9FLOR (Thioredoxin domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXF2_9FLOR)

HSP 1 Score: 214 bits (544), Expect = 5.500e-69
Identity = 103/133 (77.44%), Postives = 115/133 (86.47%), Query Frame = 0 
Query:    1 MTVHRVRNPNDFVAALPLPGSNPLVVFSFITRGCRACKYASHAFARLANDFGSKVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLEEFVGPRTVGMVRERVAHYLEDGLDLDDYVFEED 133
            MTVHRVRN  DF AALPLP S PLVVFSFIT GCRACKYASHA+ RL+NDFG++VRF EMDVSER NQLLGKRLG++AVPAFQFY FKK    +GVGVLEEFVGPRTV  VRER+AHYL+DGL++D+Y FE D
Sbjct:   37 MTVHRVRNARDFAAALPLPESTPLVVFSFITAGCRACKYASHAYDRLSNDFGARVRFFEMDVSERDNQLLGKRLGVEAVPAFQFYAFKKSPQHSGVGVLEEFVGPRTVPRVRERLAHYLDDGLNMDEYDFETD 169
The following BLAST results are available for this feature:
BLAST of Gcaud9824.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IXF2_9FLOR5.500e-6977.44Thioredoxin domain-containing protein n=1 Tax=Grac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 21..89
e-value: 3.7E-7
score: 30.1
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 1..120
score: 8.881506
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..122
e-value: 2.9E-12
score: 48.3
NoneNo IPR availableCDDcd02947TRX_familycoord: 21..116
e-value: 5.08128E-10
score: 50.6345
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 3..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_155_length_42800_cov_4.630125contigNODE_155_length_42800_cov_4.630125:20991..21392 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9824.t1Gcaud9824.t1Gracilaria caudata M_176_S67 malemRNANODE_155_length_42800_cov_4.630125 20991..21392 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9824.t1 ID=Gcaud9824.t1|Name=Gcaud9824.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MTVHRVRNPNDFVAALPLPGSNPLVVFSFITRGCRACKYASHAFARLAND
FGSKVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLE
EFVGPRTVGMVRERVAHYLEDGLDLDDYVFEED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR036249Thioredoxin-like_sf