Gcaud9805.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9805.t1
Unique NameGcaud9805.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length324
Homology
BLAST of Gcaud9805.t1 vs. uniprot
Match: A0A2V3IEF5_9FLOR (tRNA-intron lyase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEF5_9FLOR)

HSP 1 Score: 223 bits (567), Expect = 2.760e-69
Identity = 113/187 (60.43%), Postives = 131/187 (70.05%), Query Frame = 0
Query:  143 MRQLLQIQ------ASSTDFDRTDVEHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTPGEEPPIASSWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFASSISDTFAVVKVTELTIDRWLP 323
            MRQLL +Q      A      R DVEHLQL  V+AFY +FVT+QIVI D  +     D    WRLFC R  +FP +FVAY RYRAAGWLPKS LKYG +WVLYPTK Y HTHAPYCVV  FS    +  + SSWI+LQNRLRLV NVAK LV+ R+H  +P+D A+SIS TF  V++TELTIDRWLP
Sbjct:    1 MRQLLALQPAAAAAAGEAAQSRVDVEHLQLPLVDAFYLAFVTRQIVISDAAA-----DAAAAWRLFCARCARFPLLFVAYARYRAAGWLPKSGLKYGVHWVLYPTKRYAHTHAPYCVVFHFSNRPNDARLDSSWIALQNRLRLVNNVAKTLVIARLHVAEPLDLAASISRTFDAVRLTELTIDRWLP 182          
BLAST of Gcaud9805.t1 vs. uniprot
Match: M2XJJ3_GALSU (tRNA-intron lyase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XJJ3_GALSU)

HSP 1 Score: 137 bits (345), Expect = 4.130e-34
Identity = 107/342 (31.29%), Postives = 161/342 (47.08%), Query Frame = 0
Query:   24 SIHSLRLELHRRNLSTSGLRDELESRLRQACSSDTTPDLSVPRSFNVWAPFSTLHDASASNAPHPIPALLRHRSVWVCSDAYVAAAWQRTS-CGKANLSRSAPSYNA----LVHSQHANWKGRAMRQL--LQIQASSTDFDRT---------------DV--------------EHLQLTFVEAFYASFVTKQIVIHDMHSK-KPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQF---STPGEEPPIASSWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFASSIS----DTFAVVKVTELTIDRW 321
            S+  LR  L +  L   G + +L  RL  A + D   D S+  +F+     S +  AS      P   +L H SVW+    ++       S  GK +LSRS P +       +  + A  + +  RQ   L+IQ +  D + +               D+              EHLQL   EAFYASF++KQ+ I D       L D  + +  FC     FP+    YC Y+  GW P S LKYG ++VLY     +H H+P+CV++      +PG+   +  SWISLQNRLRLVK VAK L++  +H +KP   A  I     ++   ++++E+ ++RW
Sbjct:   10 SVPILRYRLCQLGLDYKGTKKDLVQRLVAASTQDQ--DQSLEETFHASTGNSIVRGASKER---PCKGILIHNSVWITQREHMMELGSTLSGFGKGSLSRSVPVFGTEAPEALKGKVARQRTKLTRQRESLEIQVARLDSENSHRALVSSSEGDILAVDIGPLLSSPTKDNIFEEHLQLCLWEAFYASFISKQLNIFDKTDPITKLTDPDRTYAYFCRLIPHFPYYLAIYCYYKERGWSPHSGLKYGVDFVLYYGSVESHVHSPFCVLVDIHKDDSPGD-CLLEKSWISLQNRLRLVKQVAKQLLL--VHVQKPKGLADEILFSRWESCLSLEISEMRVERW 343          
BLAST of Gcaud9805.t1 vs. uniprot
Match: A0A1X6PJ52_PORUM (tRNA-intron lyase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ52_PORUM)

HSP 1 Score: 102 bits (255), Expect = 8.550e-21
Identity = 75/226 (33.19%), Postives = 104/226 (46.02%), Query Frame = 0
Query:  139 KGRAMRQLLQIQASSTDF---------DRTDVEHLQLTFVEAFYASFVT-----KQIVIHDMHSKKPLNDRQQV-----------WRLFCDRSD---KFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQF--------STPGEE----PPIASSWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFASSISDTFAVVK---VTELTIDRW 321
            KGRA+R L  ++ +S             RT VEHL L   EA+YA++       + + +  + +    +                W   C RS    +F   + AY  YR AGW P+S  KYG +WVLY   +  H HA +CVVL          S  GE      P+ +SW+++QNRLRLVKNVAK L+ T +           ++D  A +    V EL IDRW
Sbjct:  252 KGRALRNLSSLEGASAAXXXXAVERAAQRTAVEHLALGLPEAYYAAYEAAPPRLRLVTLRGVAAAAAADXXXXXXXXXXXXXXXXWAACCARSPGGVRFAAAYAAYRFYRGAGWAPRSGAKYGVDWVLYKVGAARHAHASFCVVLSVAGLPDGGGSGGGEAGALGAPLDASWVAVQNRLRLVKNVAKTLLYTAVSDGGGALTPGGVADRAAFLARATVVELRIDRW 477          
BLAST of Gcaud9805.t1 vs. uniprot
Match: V4AW24_LOTGI (tRNA-intron lyase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AW24_LOTGI)

HSP 1 Score: 87.8 bits (216), Expect = 1.630e-16
Identity = 49/167 (29.34%), Postives = 92/167 (55.09%), Query Frame = 0
Query:  162 EHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTPGEEPPIAS------SWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFASSISDTFAVVKVTELTIDRWL 322
            E+LQL+FVEAF+  +    +++ +  S++ + D + +W+LFC +   F   ++ Y  +R+ GW+PKS LK+G +++LY      + H  Y V++Q+   G   P++       SW SL    R+ ++V K +++  +   K +   +  SD  +  KV E+ + RW+
Sbjct:   82 EYLQLSFVEAFFLCYGLGCLIVQN--SERNI-DIKSLWKLFCTKQRNFIPSYICYHYFRSKGWVPKSGLKFGCDYILYKVGPPFY-HGSYSVIIQYVEEGSLKPVSGYYQRKLSWRSLCGLNRITEHVGKEVLICYVIKPKSISDETFSSDFISHFKVKEIMLSRWV 244          
BLAST of Gcaud9805.t1 vs. uniprot
Match: A0A6J2VNC9_CHACN (tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VNC9_CHACN)

HSP 1 Score: 81.3 bits (199), Expect = 2.030e-13
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = 0
Query:  161 VEHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTPGEEPPIAS--SWISLQNRLRLVKNVAKNLVVTRIHAEKPVDF-ASSISDTFAVVKVTELTIDRWL 322
            +E+LQL+  EAF+  +    + IH  HS +PL    +VW+LFC     F   +V Y  +R+ GW+PKS +KYG +++LY  K     HA Y VV++         +    SW SL    R+  NV+K L++  +     +   A S  +    +KV EL + RW+
Sbjct:  311 LEYLQLSLEEAFFLVYALGCLSIH--HSGEPLFI-SEVWKLFCSVQANFESTYVVYHYFRSKGWVPKSGIKYGTDFILY-RKGPPFYHASYSVVVERVDDSLRGALLRPFSWRSLAALCRITGNVSKELMLCYVIVPSDMTTEAMSSPECLKRIKVQELIMSRWI 471          
BLAST of Gcaud9805.t1 vs. uniprot
Match: A0A2G4T9M0_RHIZD (tRNA-splicing endonuclease subunit Sen2 n=5 Tax=Rhizopus TaxID=4842 RepID=A0A2G4T9M0_RHIZD)

HSP 1 Score: 79.7 bits (195), Expect = 2.040e-13
Identity = 63/225 (28.00%), Postives = 100/225 (44.44%), Query Frame = 0
Query:  116 GKANLSRSAPSYNALVHSQH-------ANWKGRAMRQLLQIQASSTDFDR------------TDVEHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTPGEEPPIASSWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFASSISDTFAVVKVTELTIDRW 321
            GK +LSRS P++ +    QH          + +  R+  + QA   D D+             D+E LQL   EA++  F  K + I +  SK+ L   +Q W  FC     F + +  Y  YR+ GW+PKS +K+G ++VLY      + HA Y V++     G+ P    SW  L    R+   V K LV+  +   + +D   +        ++ E+   RW
Sbjct:   71 GKGSLSRSEPTWLSRTIEQHKLSLEDVTVERRKKRREKRRNQAIKDDQDKYQPDQLLDLVEHKDMETLQLDPCEAYFLIFALKALDIRN--SKQKLLSIEQCWTKFCQNDPTFHYTYAVYHYYRSLGWVPKSGIKFGVDFVLYKLGP-AYRHADYAVIIIPLQKGQ-PEDTKSWQWLLRLNRICTQVKKTLVLCYVTIPESIDRIENY-------RIQEVVYRRW 284          
BLAST of Gcaud9805.t1 vs. uniprot
Match: A0A1S3K7C4_LINUN (tRNA-intron lyase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K7C4_LINUN)

HSP 1 Score: 80.5 bits (197), Expect = 4.680e-13
Identity = 53/162 (32.72%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  162 EHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTPGEEPPIASSWISLQNRLRLVKNVAKNLVVTRIHAEKPV-DFASSISDTFAVVKVTELTIDRWL 322
            E+L L+  EAF+ S+    +V+HD  SKK LN   ++WR FC R   F   ++AY   R+ GW+PK+ +KYGA ++LY      +  +   VVL       E     SW SL    R+ + V+K +++  +   + V D   S        K+ E+ I+RW+
Sbjct:  506 EYLCLSLEEAFFLSYGLGCLVVHD-ESKKKLN-LTEMWRKFCSRQKNFLNNYIAYHSLRSKGWVPKTGIKYGAEFILYKQGPPFYHSSYSVVVLPVKEENLEQEKLLSWTSLAGMNRVTEQVSKEVLLCYVIRPRGVTDEDLSSPACVPKFKIMEVIIERWV 665          
BLAST of Gcaud9805.t1 vs. uniprot
Match: UPI001EE5C6C3 (LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C6C3)

HSP 1 Score: 79.7 bits (195), Expect = 8.060e-13
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 0
Query:  161 VEHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQF---STPGEEPPIAS---SWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFASSISDT-FAVVKVTELTIDRWL 322
            VEHL L+F E F+ S+    +V+ D   +K LN    +W+ FC   D F   ++AY  YR+ GW+PK+ LK+G ++++Y  +     H  Y V+++     T  E P       SWISL    R+ ++VAK L++  +   + V   S +S       KV E+ + RW+
Sbjct:  441 VEHLLLSFEETFFLSYGLGCLVVTD-EKQKNLN-LSSLWQRFCSSRDDFCANYIAYHYYRSKGWVPKTGLKFGCDFIVYK-EGPPFYHGSYSVLVRLVDEETLIEHPEYTHRPLSWISLAGLNRITEHVAKELLMCYVIKPRGVSEESLMSPACIPQFKVQEILVTRWV 606          
BLAST of Gcaud9805.t1 vs. uniprot
Match: UPI000C6E57A1 (tRNA-splicing endonuclease subunit Sen2-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E57A1)

HSP 1 Score: 75.9 bits (185), Expect = 3.900e-12
Identity = 58/221 (26.24%), Postives = 110/221 (49.77%), Query Frame = 0
Query:  111 QRTSCGKANLSRSAPSYN----ALVHSQHANWKGRAMRQLLQIQASSTDFDRTDVEHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFC--DRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVL-QFSTPGEEPPIASSWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFAS-SISDTFAVVKVTELTIDRWLP 323
            ++ + G   LS+  P ++    +L +    N  G   +   +   SS    +   E L L F EAF+ S+    +++ + + +  +++   +W+ FC      +FP  ++AY  +R+ GW+ KS LKYG ++VLY      + H+ YCVV+ + S+   E  +  +W+ L +  R+ ++VAK+ ++  +   K  D    S   TF    + E+ + RW+P
Sbjct:   64 EKGNFGIGYLSKDIPEFSDKRRSLSNFDEINEDGECQQHCQETSLSS----KNQYETLYLMFEEAFFLSYGLGCLIVKESNKELSISE---MWKKFCWLALDGRFPCKYIAYHYFRSKGWIVKSGLKYGTDFVLYKDGPAFY-HSTYCVVVREVSSDFNEQSL--TWLELLSLNRVNEHVAKDTLLCYVMKNKDTDLLDPSCIPTF---NIQEVLLRRWIP 271          
BLAST of Gcaud9805.t1 vs. uniprot
Match: UPI001458F9ED (LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458F9ED)

HSP 1 Score: 77.4 bits (189), Expect = 4.640e-12
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 0
Query:  162 EHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWRLFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTPGEE---PPIAS------SWISLQNRLRLVKNVAKNLVVTRIHAEKPVDFASSISDT-FAVVKVTELTIDRWLP 323
            E L L+  EAF+ SF    +++ D  ++K L D Q +W  FC+    F   +V Y  +R+ GW+PKS LK+G +++LY      + H  Y VV++     E    P +A       SWISL    R+ ++VAK L++  +   K +      S    +  KV ++ ++RW+P
Sbjct:  422 EFLHLSLEEAFFLSFGLGCLIVTD--NEKTL-DLQSLWTRFCETQQDFLPNYVVYHYFRSLGWVPKSGLKFGTDFILYKVGPPFY-HGSYSVVVKMIDEEEMHVVPEVAGVKGRDFSWISLAGLNRITEHVAKELMLCYVIKPKGLTMEEMKSPRCLSKFKVQQIAVNRWIP 589          
The following BLAST results are available for this feature:
BLAST of Gcaud9805.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEF5_9FLOR2.760e-6960.43tRNA-intron lyase n=1 Tax=Gracilariopsis chorda Ta... [more]
M2XJJ3_GALSU4.130e-3431.29tRNA-intron lyase n=1 Tax=Galdieria sulphuraria Ta... [more]
A0A1X6PJ52_PORUM8.550e-2133.19tRNA-intron lyase n=1 Tax=Porphyra umbilicalis Tax... [more]
V4AW24_LOTGI1.630e-1629.34tRNA-intron lyase n=1 Tax=Lottia gigantea TaxID=22... [more]
A0A6J2VNC9_CHACN2.030e-1333.33tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Ch... [more]
A0A2G4T9M0_RHIZD2.040e-1328.00tRNA-splicing endonuclease subunit Sen2 n=5 Tax=Rh... [more]
A0A1S3K7C4_LINUN4.680e-1332.72tRNA-intron lyase n=1 Tax=Lingula unguis TaxID=757... [more]
UPI001EE5C6C38.060e-1332.54LOW QUALITY PROTEIN: tRNA-splicing endonuclease su... [more]
UPI000C6E57A13.900e-1226.24tRNA-splicing endonuclease subunit Sen2-like isofo... [more]
UPI001458F9ED4.640e-1231.40LOW QUALITY PROTEIN: tRNA-splicing endonuclease su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 20..54
e-value: 0.0011
score: 28.3
IPR003034SAP domainPROSITEPS50800SAPcoord: 20..54
score: 9.426779
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 211..299
e-value: 1.7E-12
score: 47.2
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 205..304
e-value: 2.5E-15
score: 58.2
IPR036361SAP domain superfamilyGENE3D1.10.720.30SAP domaincoord: 5..65
e-value: 1.2E-6
score: 30.0
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 20..56
NoneNo IPR availablePANTHERPTHR21227:SF0TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 44..323
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 44..323
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 208..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_649_length_20269_cov_4.054118contigNODE_649_length_20269_cov_4.054118:9271..10242 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9805.t1Gcaud9805.t1Gracilaria caudata M_176_S67 malemRNANODE_649_length_20269_cov_4.054118 9271..10242 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9805.t1 ID=Gcaud9805.t1|Name=Gcaud9805.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MDPRPRKRRRPRTENEPSPISALSIHSLRLELHRRNLSTSGLRDELESRL
RQACSSDTTPDLSVPRSFNVWAPFSTLHDASASNAPHPIPALLRHRSVWV
CSDAYVAAAWQRTSCGKANLSRSAPSYNALVHSQHANWKGRAMRQLLQIQ
ASSTDFDRTDVEHLQLTFVEAFYASFVTKQIVIHDMHSKKPLNDRQQVWR
LFCDRSDKFPFMFVAYCRYRAAGWLPKSALKYGANWVLYPTKSYTHTHAP
YCVVLQFSTPGEEPPIASSWISLQNRLRLVKNVAKNLVVTRIHAEKPVDF
ASSISDTFAVVKVTELTIDRWLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR036361SAP_dom_sf
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf