Gcaud9781.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9781.t1
Unique NameGcaud9781.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Homology
BLAST of Gcaud9781.t1 vs. uniprot
Match: R7Q4E5_CHOCR (TAFII28 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4E5_CHOCR)

HSP 1 Score: 145 bits (365), Expect = 3.040e-40
Identity = 73/118 (61.86%), Postives = 94/118 (79.66%), Query Frame = 0
Query:   76 DEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNWS 193
            +E+APLDL     +E  +V+ LT  Q RRYEQYRRSDLK+ KV+KVL + NP +QKASD Y+IA+KGL KLFVGDVVETAL+V+ + G+ GAL P+ +REAYRRLRR+G VP+T++ S
Sbjct:   88 EEEAPLDLASFARYEHGEVAKLTAVQQRRYEQYRRSDLKNPKVKKVLVSYNPTLQKASDLYIIAVKGLAKLFVGDVVETALDVKNQMGDKGALQPKHLREAYRRLRRSGVVPSTNDRS 205          
BLAST of Gcaud9781.t1 vs. uniprot
Match: A0A7S3ENX1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENX1_9RHOD)

HSP 1 Score: 108 bits (269), Expect = 5.230e-26
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 0
Query:   77 EDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLN--PMMQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAV 186
            +D   DL ++ E +  QVS L P Q+ RYE YR+SDLK  K++K+LT+ N  P+    SD ++IA+KGL K+FVG+VVE AL+++KE G+ GAL P+ +REAYRR+ R G V
Sbjct:   70 DDKDFDLQRLMEMQSRQVSQLGPEQMNRYEFYRKSDLKQHKIKKLLTSRNLIPVTIPPSDPFIIAVKGLAKVFVGEVVENALDIQKEWGDAGALHPKHLREAYRRMDRDGNV 181          
BLAST of Gcaud9781.t1 vs. uniprot
Match: A0A7S1XG47_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XG47_9RHOD)

HSP 1 Score: 103 bits (257), Expect = 3.110e-24
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 0
Query:   73 DPEDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKA--SDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRR 182
            DP D D   DL K ++ E+  V+  + AQ+RRYE Y+RSDLK  K++K+L  +NP       SD  +IAIKGL KLFVG+VVE ALEV +ER + G L P+ IREAYRR+RR
Sbjct:   68 DPFDLDQ-FDLEKAQKHEYEVVNTFSEAQMRRYESYKRSDLKKEKMKKILMAINPAFGTTAPSDPVMIAIKGLAKLFVGEVVEAALEVMRERDQDGPLLPQHIREAYRRIRR 178          
BLAST of Gcaud9781.t1 vs. uniprot
Match: A0A1X6NJQ9_PORUM (TAFII28 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJQ9_PORUM)

HSP 1 Score: 96.7 bits (239), Expect = 1.490e-22
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query:  102 LRRYEQYRRSDLKSSKVRKVLTTLNPMMQKA--SDQYVIAIKGLGKLFVGDVVETALEV------RKERGETGALTP----RQIREAYRRLRRAGAVPTT 189
            +RRYE YRRSDLK  +V+KVLT ++P+  K   SD Y+IA+KGL KLFVGDVVETA  V      RKE G+TG   P    + +REAYRRLRR GA PTT
Sbjct:    1 MRRYEAYRRSDLKKERVKKVLTGISPVFDKMAPSDAYIIAVKGLAKLFVGDVVETAATVAAEWGDRKE-GDTGLNAPPLQTKHLREAYRRLRRDGAFPTT 99          
BLAST of Gcaud9781.t1 vs. uniprot
Match: M2XYV0_GALSU (Transcription initiation factor TFIID subunit D9 isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYV0_GALSU)

HSP 1 Score: 97.4 bits (241), Expect = 3.690e-22
Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = 0
Query:   75 EDEDAPLDLMKMREFEFSQVSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPM--MQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVP 187
            ++ED  + L K RE E    SNL      R+E YR+ DL  +KV+K+++T+NP   M +  + ++IA+KGLGKL+ G++VE A+++R ERGE GA+ P  +REAYRR+++AG  P
Sbjct:   46 DEEDEQVRLWKQREREI--FSNLNEDDQERFEYYRQGDLDKNKVKKLVSTVNPALSMMQPDNPFIIAVKGLGKLYAGELVEMAVDIRNERGEQGAVRPVHLREAYRRMQKAGKTP 158          
BLAST of Gcaud9781.t1 vs. uniprot
Match: UPI00083F0C90 (transcription initiation factor TFIID subunit 11 isoform X2 n=1 Tax=Drosophila arizonae TaxID=7263 RepID=UPI00083F0C90)

HSP 1 Score: 83.6 bits (205), Expect = 1.600e-17
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVP 187
            +SN T  QL RYE YRRS    + V++++ T+       S   VIA+ G+ K+FVG+VVE AL+V +++GE+GAL P+ IREA RRLRR G +P
Sbjct:    1 MSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC--SVSQNVVIAMSGIAKVFVGEVVEEALDVMEQQGESGALQPKFIREAVRRLRRKGRMP 92          
BLAST of Gcaud9781.t1 vs. uniprot
Match: UPI0008F9CA38 (transcription initiation factor TFIID subunit 11 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9CA38)

HSP 1 Score: 85.5 bits (210), Expect = 3.310e-17
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSN 191
            VSN T  QL RYE YRRS    + +++++ T+       S   VIA+ G+ K+FVG+VVE AL+V +E+ ETG L P+ +REA RRLR  G +P T +
Sbjct:  102 VSNFTEEQLDRYEMYRRSAFPKAAIKRLMQTITA--NSVSQNVVIAVSGIAKVFVGEVVEQALDVMEEQNETGPLQPKHLREAVRRLRAQGMIPNTKH 197          
BLAST of Gcaud9781.t1 vs. uniprot
Match: A0A7G3B197_LUTLO (Putative transcription initiation factor tfiid subunit 11 n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3B197_LUTLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.360e-17
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPT 188
            VSN T  QL RYE +RRS    + V++++ T+       S   VIA+ G+ K+F G+VVE AL+V +  GETGAL P+ IREA RRLRR GA+P+
Sbjct:   98 VSNFTEEQLDRYEMFRRSAFPKAAVKRLMQTITGC--SVSQNVVIAMSGIAKVFAGEVVEEALDVMEAAGETGALQPKYIREAVRRLRRRGAIPS 190          
BLAST of Gcaud9781.t1 vs. uniprot
Match: B4KID1_DROMO (TAFII28 domain-containing protein n=10 Tax=Drosophila TaxID=7215 RepID=B4KID1_DROMO)

HSP 1 Score: 84.7 bits (208), Expect = 4.940e-17
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVP 187
            VSN T  QL RYE YRRS    + V++++ T+       S   VIA+ G+ K+FVG+VVE AL+V +++GE+GAL P+ IREA RRLRR G +P
Sbjct:   88 VSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGC--SVSQNVVIAMSGIAKVFVGEVVEEALDVMEQQGESGALQPKFIREAVRRLRRKGRMP 179          
BLAST of Gcaud9781.t1 vs. uniprot
Match: A0A1W4XT12_AGRPL (transcription initiation factor TFIID subunit 11 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4XT12_AGRPL)

HSP 1 Score: 83.2 bits (204), Expect = 8.170e-17
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   94 VSNLTPAQLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKASDQYVIAIKGLGKLFVGDVVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPT 188
            VSN T  QL RYE YRRS    + +++++ T+       S   VIA+ G+ K+FVG+VVE AL+V +E+ ETG L P+ +REA RRLR  GA+P+
Sbjct:   51 VSNFTEEQLDRYEMYRRSAFPKAAIKRLMQTITGC--SVSQNVVIAMAGIAKVFVGEVVEEALDVMEEQNETGPLQPKHLREAIRRLRLQGAIPS 143          
The following BLAST results are available for this feature:
BLAST of Gcaud9781.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q4E5_CHOCR3.040e-4061.86TAFII28 domain-containing protein n=1 Tax=Chondrus... [more]
A0A7S3ENX1_9RHOD5.230e-2650.89Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1XG47_9RHOD3.110e-2453.57Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NJQ9_PORUM1.490e-2259.00TAFII28 domain-containing protein n=1 Tax=Porphyra... [more]
M2XYV0_GALSU3.690e-2245.22Transcription initiation factor TFIID subunit D9 i... [more]
UPI00083F0C901.600e-1748.94transcription initiation factor TFIID subunit 11 i... [more]
UPI0008F9CA383.310e-1745.92transcription initiation factor TFIID subunit 11 n... [more]
A0A7G3B197_LUTLO4.360e-1749.47Putative transcription initiation factor tfiid sub... [more]
B4KID1_DROMO4.940e-1750.00TAFII28 domain-containing protein n=10 Tax=Drosoph... [more]
A0A1W4XT12_AGRPL8.170e-1747.37transcription initiation factor TFIID subunit 11 n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006809TAFII28-like protein domainPFAMPF04719TAFII28coord: 94..179
e-value: 5.5E-26
score: 90.4
IPR006809TAFII28-like protein domainCDDcd08048TAF11coord: 97..181
e-value: 6.25289E-29
score: 101.104
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 97..187
e-value: 7.5E-26
score: 92.1
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 98..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..52
NoneNo IPR availablePANTHERPTHR13218:SF8TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11coord: 25..190
IPR045127Transcription initiation factor TFIID subunit 11-likePANTHERPTHR13218TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATEDcoord: 25..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_241_length_34621_cov_4.189835contigNODE_241_length_34621_cov_4.189835:21169..21765 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9781.t1Gcaud9781.t1Gracilaria caudata M_176_S67 malemRNANODE_241_length_34621_cov_4.189835 21169..21765 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9781.t1 ID=Gcaud9781.t1|Name=Gcaud9781.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MQGPDQDQIMEPVEDTPIPTLDASMSTETENAANERDISPKKEDEIDEEA
AAPAPSTKETVKNTTESAAEAEDPEDEDAPLDLMKMREFEFSQVSNLTPA
QLRRYEQYRRSDLKSSKVRKVLTTLNPMMQKASDQYVIAIKGLGKLFVGD
VVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNWSEGSLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006809TAFII28_dom
IPR009072Histone-fold
IPR045127TAF11-like