Gcaud9780.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9780.t1
Unique Name	Gcaud9780.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	295

Homology

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BLAST of Gcaud9780.t1 vs. uniprot
Match: R7Q4T9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4T9_CHOCR)

HSP 1 Score: 58.2 bits (139), Expect = 4.480e-6
Identity = 57/188 (30.32%), Postives = 80/188 (42.55%), Query Frame = 0

Query:    1 MIKRLKWNVLHADXXXXXXXXXXXXXXXD-----------QQLSHAAALQVLLHNDPELNPSRSAHDDVPSNTSRLSPQPQARNRRGASSDDEFKQQTS--SDEDEVERDERREQANGT-------APNEDSL----QDMGHGFAEWKECLLCPGKKFFNEGDLQLHVESKKHLKALRKQSPSHQQPK 164
            MIKRLKWNVL+                 +           +Q      LQ L+  DP L  + + H  +           QA    G SSD +    +S  S ED   +D  RE  NGT          ED+L    +D    +AEW+EC +CPGK+F N+ +++ H+ SK+H +A  K       PK
Sbjct:    1 MIKRLKWNVLYGGGDGADSDGCLSSSSEEGEDKNDPGNLKKQAEANRLLQELVEKDPLL--AETLHQKL-----------QAATYDGNSSDSDAMSLSSDASGEDGGSQDPNRE--NGTEKGEAAEGAGEDNLVEEDEDADVEYAEWRECNICPGKRFLNDAEVESHLSSKRHRRAEAKYQKKMSLPK 173

The following BLAST results are available for this feature:

BLAST of Gcaud9780.t1 vs. uniprot

BLAST of Gcaud9780.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7Q4T9_CHOCR	4.480e-6	30.32	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 255..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_241_length_34621_cov_4.189835	contig	NODE_241_length_34621_cov_4.189835:20229..21113 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9780.t1	Gcaud9780.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_241_length_34621_cov_4.189835 20229..21113 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9780.t1 ID=Gcaud9780.t1|Name=Gcaud9780.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=295bp
MIKRLKWNVLHADDDDDPGGLSSSSDESDQQLSHAAALQVLLHNDPELNP
SRSAHDDVPSNTSRLSPQPQARNRRGASSDDEFKQQTSSDEDEVERDERR
EQANGTAPNEDSLQDMGHGFAEWKECLLCPGKKFFNEGDLQLHVESKKHL
KALRKQSPSHQQPKLCLGNNQLQTETASDAHDDEQDERKTPRSPQKATPP
AHLTLSKSTSKSEGNSDLLEKVAHALAVAEARAAQKHDTGMKEAHKHETP
DEQDRKRAKRKKEAAKRKLRALKRRKWEKGNKDKAIHDAETLCK*