Gcaud9768.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9768.t1
Unique NameGcaud9768.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length248
Homology
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BLAST of Gcaud9768.t1 vs. uniprot
Match: A0A2V3IM95_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM95_9FLOR)

HSP 1 Score: 324 bits (830), Expect = 1.780e-103
Identity = 164/247 (66.40%), Postives = 197/247 (79.76%), Query Frame = 0 
Query:    1 LALGEAYLDLLSFSAAKEHLEAAIADLAIYHDGNDSDLSSMLALLLLAELRASEREFQHAKNLLSQALQSMRNRSMQHSSYAACCLLTLASVYSAMREERKALVAVTAAIDVLVAVKFEHMPIYADALRALGCVHFRMGEIDKAQKVFLQGLQIVQDWMARPDWHLAPFQHCAHLDVFLVESVAWTFVKQGRMDDAKALFEQARTQRRMRQLDDTRCVDPFENATQPGSSPERDGTQVSWLYTRHLY 247
            LALGEAYLD LSF+ AK+HLE A+ADLAI+   +D+DL S+LALLLLAE RASE EF+++K LL+QALQSMR+  MQ SS+AACCLLTL+SVY A+ EE KALVAVT AI +LVAVKFE MPIYADALRALGCV FRMG++++AQK F Q L IVQDW ARPDW  AP QHC HLDVFL+E +AWTFVKQ  M+DA+ LF+QA+ QRR RQLD+T CVDP E+      +  +   + + +YTRHLY
Sbjct:  460 LALGEAYLDQLSFAPAKDHLEVALADLAIHRSRDDTDLHSILALLLLAEFRASEHEFENSKRLLTQALQSMRDGPMQRSSFAACCLLTLSSVYCALNEENKALVAVTRAIGILVAVKFERMPIYADALRALGCVRFRMGQVNEAQKQFTQALHIVQDWKARPDWQQAPVQHCVHLDVFLIELIAWTFVKQNMMNDAETLFQQAKAQRRARQLDETTCVDPSEDLAHLSGTNSKHRERKASIYTRHLY 706
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BLAST of Gcaud9768.t1 vs. uniprot
Match: A0A6T6LM98_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6LM98_9RHOD)

HSP 1 Score: 78.2 bits (191), Expect = 3.280e-14
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 0 
Query:   63 LLSQALQSMRNRSMQHSSYAACCLLTLASVYSAMREERKALVAVTAAIDVLVAVKFEHMPIYADALRALGCVHFRMGEIDKAQKVFLQGLQIVQDWMARPDWHLAPFQHCAHLDVFLVESVAWTFVKQGRMDDAK---ALFEQARTQRRMRQL 212
            LL +AL+ +    +  ++ A   L  L ++Y    +  +A    T  ++ L A++++ MPIYADAL  L  V    G+   A + F  GL+IV  W ++  W   P QHC  LD++L+E +A +   QG   DAK    L   AR  RR++ L
Sbjct:    4 LLVEALRILNKIGLGKTTLAVNALTNLVTIYVQRGQLDRANYVATELLNTLHAMRYDKMPIYADALGVLAMVRMAAGDYTDAARQFGSGLEIVAGWGSK-SWTSVPVQHCLDLDIWLMEGLAISLNLQGLEKDAKYMVTLASDARLSRRLKSL 155
The following BLAST results are available for this feature:
BLAST of Gcaud9768.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IM95_9FLOR1.780e-10366.40Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6T6LM98_9RHOD3.280e-1433.33Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 83..116
e-value: 320.0
score: 1.8
coord: 41..74
e-value: 250.0
score: 2.7
coord: 125..158
e-value: 0.17
score: 21.0
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 130..154
e-value: 0.21
score: 11.8
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 125..158
score: 8.1719
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..226
e-value: 4.4E-17
score: 64.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 40..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 102..119
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..247
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..96
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 97..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_14_length_85149_cov_9.102119contigNODE_14_length_85149_cov_9.102119:12786..13529 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9768.t1Gcaud9768.t1Gracilaria caudata M_176_S67 malemRNANODE_14_length_85149_cov_9.102119 12786..13529 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9768.t1 ID=Gcaud9768.t1|Name=Gcaud9768.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
LALGEAYLDLLSFSAAKEHLEAAIADLAIYHDGNDSDLSSMLALLLLAEL
RASEREFQHAKNLLSQALQSMRNRSMQHSSYAACCLLTLASVYSAMREER
KALVAVTAAIDVLVAVKFEHMPIYADALRALGCVHFRMGEIDKAQKVFLQ
GLQIVQDWMARPDWHLAPFQHCAHLDVFLVESVAWTFVKQGRMDDAKALF
EQARTQRRMRQLDDTRCVDPFENATQPGSSPERDGTQVSWLYTRHLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf