Gcaud9750.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9750.t1
Unique NameGcaud9750.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length1107
Homology
BLAST of Gcaud9750.t1 vs. uniprot
Match: A0A2V3J6L3_9FLOR (RRM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6L3_9FLOR)

HSP 1 Score: 1303 bits (3373), Expect = 0.000e+0
Identity = 743/1136 (65.40%), Postives = 836/1136 (73.59%), Query Frame = 0
Query:    1 MVNEHVERDADWSHERMRDPRPGKKPRLSASAVDDPSLTPPPRSSGPPXXXXXXXXXXXXPPSSTGGAGEQSIPRILLANLDYNTTEHDIGDFFRAAGVDVKHVSLVKVSPGNRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEGDVRELFRGCSIVDARSRPVKGGPPDMNTWFVDFADEQSFRRALDKDRSLPGLTICIATAQGRSAPRSRDYRDSGALPPPPPDVDRRMSSSRDERLRDDRYRDEPPSRDERGRDRXXXXLXXXDRASREDRLRDE------RALDGRDSLDRHPDRSRDDVDRHGXXXXXXXGRN---DSPRRYDRRADADRNGDVGNGFSSRGRAPSRSRSPPPRYERERRYDRHDYERRERGRAAGGGYDDVYDRHRDRRYSPDYYXXXXXXXXXXXXXXXXXXXXARYERDYHRRXRDYGREYR-------------------RDSRGASRYEREPADARYERERKMDPPLDPAVTTVLTNLPFCEDRERVVETLARTLEDLNDALRIKDITPVGRRCGACIVVFRDEDSYAKALAMNSITISTRKVNILPLEVPSVARVQKLQPGFIPEDIIDDMRRNYGVESLYIKLKQSDQLLLGIEDSRFLVRLLDIDGRPLLHSRYATVSYIPSRNHANDMGGRSRRSPHDDFGGPXXXXXXXXXXXXXXXXXXXXGDDDDGPPDRRRFDGGDREXXXXXXXXXXXXGDRETRGYNGRD-EWRVQFVGPHDRIEERLVKNALTHIGLEHLTVVPIDDCTVEVHGGSTGESKMREVLNLPSTRLPSAVSLRALTARACSS--SHKKRPLPKSTPPLQPPSSTSDPDADGKSAKKLKRPQDHTDSGKVPTSLQAALTDRFYVSPMTPPPGDTSVGKGKKGTPDPELPQICERLETLRSAITGRGSKDGDGQNYAAFCDNLKNMCEPQVLKYTTQENTDPLPPIVWTGTLSKGAKAACNGYLVLRSTHGEEYVKKTVAAIPKDVKVEFRGRFDDEAFDHLLTSEAVVVVVKAQEEDDSGMDSTPTDKRAPRSREYFKGILQSLRSKQRLGIGRYVWEGHKFLSLCIPPNPYIFKKLRLPWRYQDFTGHDSLLLVVGPKSASQK 1105
            MVNEH ERD +WSH+RMRDPRPGKKPRL+    DDPSLTP                    PP       + SIPRILLANLDYNTTEHDI DFFR AGVDV+ VSLVKVSPGNRVNGNAYVYV+D RSV +ALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSE DVRELFRGC+I+DARSRPVKGGPPDMNTWFVDF DE SFRRALDKDRSLPGLTICIATAQGR  PR+RD+RD+G  PPPP D+DRR+       LRDDR RD     D      XXXX XXXDR  R+D           R  DGR+SLDRHPDR         XXXXXXX      +SPRR+DRRA+ DRNGDVGNG+S RGRA SRS SPP RY+R+RR DR+DYERR+R      GYD+ YDRHRDRRYSP+YY                      Y+RDY RR RD  R                      RD RG  RY+REP D     +RK D PLDP+VTTVLTNLPFCEDRERVV+TLA TLE LNDAL+IKDI PVGRRCGAC+V+FRDE+SY++ALAMNSITIS RKVNILPLEVPSVARVQKLQPGF PEDIIDDMRR+YGVE+LYIKL+QSDQLLLGI+DSRFLVRLLDIDGRPL+HSRYATVSYIPSRNHAND+  RSRRSP +DF GP    XXXXXXXX        G D++G PDRRR DGGDR              DR+ R Y+ +  EW+VQF GP + ++E L+K+AL ++G+  L V  +DD TVEVHGG+TGE    +VL++P+ RLPS +S + L AR      SH   P PK   P +    TSD  A+  S KK+K   D+   GKVPTSLQ ALTDRF+VSPMTP PGD ++ KGK+  P+PELPQICERLETLRSAITGRGSKD DG NY+ FC NL+++CEPQVLKYTT ENTDPLPPIVW GTLSKG KA C G+LVLRS+  +E  K  V AIP DVKVE RG+F+D AFDHLLT EAVVVVVKA+EE   G D++  D R P +REYFKGILQSLR+KQRLGIGRY+WEG K+LSLCIPPNP +FKKLRLPWRYQDF GHDSLLLVVGPK+A QK
Sbjct:    1 MVNEHAERDPEWSHDRMRDPRPGKKPRLTDDRRDDPSLTP------------------TRPP-------DPSIPRILLANLDYNTTEHDIEDFFRDAGVDVREVSLVKVSPGNRVNGNAYVYVIDHRSVHIALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEKDVRELFRGCNIIDARSRPVKGGPPDMNTWFVDFGDEDSFRRALDKDRSLPGLTICIATAQGRGTPRNRDFRDNGP-PPPPNDMDRRLP------LRDDRPRD-----DRXXXXXXXXXXXXXDRPPRDDXXXXXXXHXXXRLPDGRESLDRHPDRXXXXXXXXXXXXXXXXXXXXXXESPRRHDRRAEGDRNGDVGNGYS-RGRAHSRSMSPPSRYDRDRRNDRYDYERRDRR-----GYDEPYDRHRDRRYSPEYYRD------------------REYDRDYERRDRDRYRXXXXXXXXXXXXXXXXXXXXXXRDPRGG-RYDREPVDXXXXXDRKGDRPLDPSVTTVLTNLPFCEDRERVVDTLAGTLEQLNDALKIKDIIPVGRRCGACVVIFRDEESYSRALAMNSITISGRKVNILPLEVPSVARVQKLQPGFAPEDIIDDMRRSYGVETLYIKLRQSDQLLLGIDDSRFLVRLLDIDGRPLMHSRYATVSYIPSRNHANDVA-RSRRSPPNDFNGPGGRGXXXXXXXXRDRD----GRDEEGAPDRRRSDGGDRRDNGSDHARRDT--DRDARNYSSKQPEWKVQFFGPQNHVKEGLIKDALAYVGVHGLAVRSLDDYTVEVHGGNTGEGTFHKVLDIPNVRLPSPLSFKGLIARPARPPRSHSLHPDPK---PQKKRPFTSDTGAEESSPKKMKHADDNR-HGKVPTSLQTALTDRFHVSPMTPSPGDATLSKGKRSPPNPELPQICERLETLRSAITGRGSKDSDGLNYSEFCGNLRSLCEPQVLKYTTMENTDPLPPIVWNGTLSKGNKAKCRGFLVLRSSQKDEQFKPVVEAIPSDVKVELRGKFEDGAFDHLLTPEAVVVVVKAEEEGARGTDASVADGRTPNNREYFKGILQSLRNKQRLGIGRYMWEGKKYLSLCIPPNPCVFKKLRLPWRYQDFAGHDSLLLVVGPKAAPQK 1063          
BLAST of Gcaud9750.t1 vs. uniprot
Match: R7QLC4_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLC4_CHOCR)

HSP 1 Score: 680 bits (1754), Expect = 6.760e-224
Identity = 506/1142 (44.31%), Postives = 634/1142 (55.52%), Query Frame = 0
Query:   21 RPGKKPRLSASAVDDPSLTPPPRSSGPPXXXXXXXXXXXXPPSSTGGAGEQSIP-----RILLANLDYNTTEHDIGDFFRAAGVDVKHVSLVKVSPGNRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEGDVRELFRGCSIVDARSRPVKGGPPDMNTWFVDFADEQSFRRALDKDRSLPGLTICIATAQGRSA-------PRSRDYRDSGALPPPPPDVDRRMSSSRDERLRDDR---------YRDEPPSRDERGRDRXXXXLXXXDRAS------REDRLRDERALDGRDSLDRHPDRSRDDVDRHGXXXXXXXGRNDSPRRYDR--RADADRNGDVGNGFSSRGRAPSRSRSPPPRYERERRYDRHDYERRERGRAAGGGYDDVYDRHRDRRYSPDYYXXXXXXXXXXXXXXXXXXXXARYERDYHRRXRDYGREYRRDSRGASRYEREPADARY---ERERKMDPPLDPAVTTVLTNLPFCEDRERVVETLARTLEDLNDALRIKDITPVGRRCGACIVVFRDEDSYAKALAMNSITISTRKVNILPLEVPSVARVQKLQPGFIPEDIIDDMRRNYGVESLYIKLKQSDQLLLGIEDSRFLVRLLDIDGRPLLHSRYATVSYIPSRNHANDMGGRSR--RSPHDDFGGPXXXXXXXXXXXXXXXXXXXXGDDDDGPPDRRRFDGGD------REXXXXXXXXXXXXGDRETRGYNGRDE--WRVQFVGPHDRIEERLVKNALTHIGLEHLTVVPIDDCTVEVHGGSTGESKMREVLNLPSTR----LPSAVSLRALTARACSSSHKKRPLPKSTPPLQPPSSTSDPDADGKSAKKLKRPQDHTDSGKVPTSLQAALTDR-----FYVSPMTPPPGDTSVGKGKKGTP-DPELPQICERLETLRSAITGRGSKDGDGQNYAAFCDNLKNMCEPQVLKYTTQENTDPLPPIVWTGTLSKGAKAACNGYLVLRSTHGEEYVKKTVAAIPKDVKVEFRGRFDDEAFDHLLTSEAVVVVVKAQEEDDSGMDSTPTDKRA-------PRSREYFKGILQSLRSKQRLGIGRYVWEGH--KFLSLCIPPNPYIFKKLRLPWRYQDFTGHDSLLLVVGPKS 1101
            RPGKKPRLS            P + G P             PS +G  G    P     R+LLANL YNTTE  + D FR AG +V  V LVKV P NRVNGNA+V+++D RSVD+AL LDG EF GR LRVS MPEDQRT CVRG+   S+  DV +LFRGCSIV  RSRPVKGGPPD+NTWFVDF DE+SF RAL KDR+ PGL ICIATAQGR         P  RD  D G          R     RD+R              Y   PP  D   R+R           +       + R R  R    RD      DR RD +DR                 YDR  RAD DR      G+  RG    R  SPP    R+ RY       RER    G        R RD        XXXXXXXXXXXXXXXXXXXX          X   G     DSRG  RY+R+  +A     +R+R+ D  LDPAVT VLTNLPFCE+R++V++TL RTLEDL DAL+I+DI PVGRRCGAC+VVFR+  S  +A+ + SI+I+ RKVNILPLEVPS+ARVQKL  GF  EDI+DD++R+YGV +L+++ KQSDQLLLG+EDSRFLVRLLDIDGR L++SRYATVSYIPSR+H++ MGGR R  R  +DD  G                       DD G P   R  GGD        XXXXXXXXXXXX           DE  W V+        ++R + NA  + G+  L+    D  +  +  GS   S M +V+ L + +      ++ S   + +R    SH +                   ++DG        P+    S +V    Q  +          +SPMTP PGD ++    K  P DP LP   +RLE +RS I  R  +D   +NY +FC +L  + EPQ L +T     DP+PP VW+G++ KG  + C+G+LVL S   EE V+KT++ +PKD+K+E RG+++DEAF HLL  E+VVV++KA +ED         DKRA       PRS++   GIL+SLR KQ++GI RY   G   K+++LCIPPNPY+F+KLR+PWR +D+ GHDSLLL+VGPK+
Sbjct:   76 RPGKKPRLSLER---------PGAQGSPGAFT---------PSGSGRGGGSPTPLPSSSRLLLANLSYNTTEEQLVDLFRDAGAEVDKVRLVKVPPDNRVNGNAFVWLMDSRSVDIALGLDGREFLGRTLRVSDMPEDQRTACVRGLRPRSTSDDVHDLFRGCSIVGVRSRPVKGGPPDVNTWFVDFGDEESFTRALAKDRTAPGLMICIATAQGRGPRLPRERIPGPRDDYDRGGPXXXXXXXXRGEYDRRDDRXXXXXXXXXXXXGPYDRAPPVLDVDPRERMPPPKERNGMGNGGPPPRSKSRSRSPRGGYDRDRGGSSRDRIRDPMDRD----------------YDRSRRADYDR------GYPPRGHERDRRISPP----RDDRY-------RERXXXXG--------RDRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----DSRGG-RYDRDIREASRHAEQRDRRGDQGLDPAVTAVLTNLPFCENRQQVIDTLGRTLEDLPDALKIQDIIPVGRRCGACVVVFRESGSQNRAVQLQSISINGRKVNILPLEVPSIARVQKLSHGFSVEDILDDIQRHYGVRTLFVRTKQSDQLLLGVEDSRFLVRLLDIDGRRLVNSRYATVSYIPSRHHSDGMGGRGRPSRDAYDDPNGRGGGYRDRESR------------DDRGSPGNERKRGGDPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPDEAGWEVRLAELPPAADDRELLNAFENAGVTGLSFDRHDPRSGLLRCGSARLSDMDKVIGLVNRKEGFLFKNSSSKATVISRGGKRSHAEY------------------ESDGIEKLGHSPPKKLKTSSEVEWKAQEEMGSLPPGQGIQISPMTPSPGDYTLPLKTKREPLDPSLPDTVKRLEKVRSNILERPPEDDSSENYESFCRSLHALREPQKLIHTMSNTIDPIPPQVWSGSVRKGPTSRCDGFLVLNSNQSEEAVRKTISELPKDIKIEHRGKWEDEAFAHLLKPESVVVILKAAKEDGK------VDKRAEKSGSAIPRSKDVLNGILRSLRGKQKMGISRYTLPGQSKKYVALCIPPNPYMFEKLRVPWRARDYAGHDSLLLIVGPKN 1116          
The following BLAST results are available for this feature:
BLAST of Gcaud9750.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6L3_9FLOR0.000e+065.40RRM domain-containing protein n=1 Tax=Gracilariops... [more]
R7QLC4_CHOCR6.760e-22444.31RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 498..518
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 801..884
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..401
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..401
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 679..721
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 645..721
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 831..847
NoneNo IPR availableCDDcd00590RRM_SFcoord: 157..214
e-value: 1.8534E-4
score: 38.8253
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 489..563
e-value: 3.5
score: 1.7
coord: 156..227
e-value: 0.66
score: 8.1
coord: 75..148
e-value: 4.1E-6
score: 36.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 77..146
e-value: 6.7E-7
score: 29.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 74..152
score: 11.28118
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..150
e-value: 8.0E-10
score: 40.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 151..231
e-value: 1.2E-6
score: 30.2
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 489..673
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 75..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_666_length_19980_cov_4.323898contigNODE_666_length_19980_cov_4.323898:329..3649 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9750.t1Gcaud9750.t1Gracilaria caudata M_176_S67 malemRNANODE_666_length_19980_cov_4.323898 329..3649 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9750.t1 ID=Gcaud9750.t1|Name=Gcaud9750.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=1107bp
MVNEHVERDADWSHERMRDPRPGKKPRLSASAVDDPSLTPPPRSSGPPSA
PPSAPPSAPPPPSSTGGAGEQSIPRILLANLDYNTTEHDIGDFFRAAGVD
VKHVSLVKVSPGNRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTM
PEDQRTVCVRGMPRPSSEGDVRELFRGCSIVDARSRPVKGGPPDMNTWFV
DFADEQSFRRALDKDRSLPGLTICIATAQGRSAPRSRDYRDSGALPPPPP
DVDRRMSSSRDERLRDDRYRDEPPSRDERGRDRDERGLHRDDRASREDRL
RDERALDGRDSLDRHPDRSRDDVDRHGRDEYDRRGRNDSPRRYDRRADAD
RNGDVGNGFSSRGRAPSRSRSPPPRYERERRYDRHDYERRERGRAAGGGY
DDVYDRHRDRRYSPDYYRERDYERDYDRRDRYRRDYDARYERDYHRRDRD
YGREYRRDSRGASRYEREPADARYERERKMDPPLDPAVTTVLTNLPFCED
RERVVETLARTLEDLNDALRIKDITPVGRRCGACIVVFRDEDSYAKALAM
NSITISTRKVNILPLEVPSVARVQKLQPGFIPEDIIDDMRRNYGVESLYI
KLKQSDQLLLGIEDSRFLVRLLDIDGRPLLHSRYATVSYIPSRNHANDMG
GRSRRSPHDDFGGPGGRGGGGGGGGGGRDNRDGRGDDDDGPPDRRRFDGG
DRERRDSGSDHGRRDGDRETRGYNGRDEWRVQFVGPHDRIEERLVKNALT
HIGLEHLTVVPIDDCTVEVHGGSTGESKMREVLNLPSTRLPSAVSLRALT
ARACSSSHKKRPLPKSTPPLQPPSSTSDPDADGKSAKKLKRPQDHTDSGK
VPTSLQAALTDRFYVSPMTPPPGDTSVGKGKKGTPDPELPQICERLETLR
SAITGRGSKDGDGQNYAAFCDNLKNMCEPQVLKYTTQENTDPLPPIVWTG
TLSKGAKAACNGYLVLRSTHGEEYVKKTVAAIPKDVKVEFRGRFDDEAFD
HLLTSEAVVVVVKAQEEDDSGMDSTPTDKRAPRSREYFKGILQSLRSKQR
LGIGRYVWEGHKFLSLCIPPNPYIFKKLRLPWRYQDFTGHDSLLLVVGPK
SASQKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf