Gcaud9747.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9747.t1
Unique NameGcaud9747.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length224
Homology
BLAST of Gcaud9747.t1 vs. uniprot
Match: A0A2V3J350_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J350_9FLOR)

HSP 1 Score: 271 bits (693), Expect = 2.430e-89
Identity = 141/215 (65.58%), Postives = 175/215 (81.40%), Query Frame = 0
Query:    9 AAFVSFVALVLVAVAIASNYWLKISLDADEQSSPLNPTTMDDGLND--LTIRYRLEHFGLWVGCHRELVFDKRSCAYIGASCYTDVCWVRNGVDPTCLNFRLLPIDNCAAYQATRAMVVIGTIFLILGSSVLVVSVCITSKSLSTAGAVLTFVSSIFLMIGFAVFYDRTHNFLDQIASIGWSFILLIVAWPLAFVAAVIALLASLQHQKQEEFEE 221
            AAF+SFV+LVLVAV+IA+NYW+K+S D   QS PLNP   +D  +D  L ++Y L++FGLWVGCHRE+ F+K SCAYIGASCY+DVCWVRNG    C NFRL  IDNC+AYQATRAM +IGTIFL+LGSS+LVVSV ++S SLS AG + T ++S+FLMI FAVFYDR  N+LD I SIGWSFILLIVAWPLAFVA ++ + ASLQ +K++E+ +
Sbjct:    9 AAFLSFVSLVLVAVSIATNYWVKLSPDTQPQS-PLNPLA-NDTFSDPTLLVQYNLDYFGLWVGCHREVTFNKVSCAYIGASCYSDVCWVRNGRQEKCSNFRLPQIDNCSAYQATRAMAIIGTIFLVLGSSILVVSVWVSSNSLSIAGTISTLLASVFLMIAFAVFYDRNFNYLDDIGSIGWSFILLIVAWPLAFVAFLLGIPASLQSEKRDEYSQ 221          
BLAST of Gcaud9747.t1 vs. uniprot
Match: A0A1X6P4S8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4S8_PORUM)

HSP 1 Score: 191 bits (484), Expect = 1.600e-57
Identity = 100/207 (48.31%), Postives = 144/207 (69.57%), Query Frame = 0
Query:    9 AAFVSFVALVLVAVAIASNYWLKISL--DADEQSSPLNPTTMDDGLNDLTIRYRLEHFGLWVGCHRELVFDKR-SCAYIGASCYTDVCWVRNGVDPTCLNFRLLPIDNCAAYQATRAMVVIGTIFLILGSSVLVVSVCITSKSLSTAGAVLTFVSSIFLMIGFAVFYDRTHNF--LDQIASIGWSFILLIVAWPLAFVAAVIALLAS 210
            AA +SF+ALVL AV +++N+W+ +       + ++ LNP   +  L++L + Y + H+GLWVGCH E  F    SCAYIGASCY+DVCW+RN  D TCL+ R+  + NCAAYQATRA++ IGT+ LI+GSS+L V+ C+ S++LS  G + TF + + LM  FAVFY R ++   +D  AS+GWSFIL+I  WP+A VA+++   +S
Sbjct:    9 AALLSFIALVLTAVGLSTNHWIDVDSPRSTSDLAARLNPVVTNAELDNLRVNYDVSHYGLWVGCHLERNFGGEVSCAYIGASCYSDVCWIRNRRDKTCLDRRVRLLTNCAAYQATRALICIGTMVLIVGSSLLFVATCVLSRNLSLLGGLHTFFAGVCLMTAFAVFYAREYSGPGVDGFASLGWSFILVIAGWPIAIVASLLGCASS 215          
BLAST of Gcaud9747.t1 vs. uniprot
Match: A0A1X6NK28_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NK28_PORUM)

HSP 1 Score: 176 bits (445), Expect = 1.620e-51
Identity = 92/216 (42.59%), Postives = 145/216 (67.13%), Query Frame = 0
Query:   10 AFVSFVALVLVAVAIASNYWLKISLDADEQSSP--LNPTTMDDGLNDLTIRYRLEHFGLWVGCHRELVF-DKRSCAYIGASCYTDVCWVRNGVDPTCLNFRLLPID-NCAAYQATRAMVVIGTIFLILGSSVLVVSVCITSKSLSTAGAVLTFVSSIFLMIGFAVFYDRTHNFLDQI---ASIGWSFILLIVAWPLAFVAAVIALLASLQHQKQEE 218
            A +S +ALVL AV +A+N+W+ ++      +S    NP   +  L  LT+ Y + H+GLWVGCH E  F ++RSCAYIG  CY+DVCW+RN  D TCL+ ++  +D +C +YQ TR +V +G I L++G+S+LVV+ C+TS  ++ +G+ LT +SS+ L I F VFY + +  +D     A +GWSF+LLI++WP+A VAA++  L ++  + +++
Sbjct:   10 AILSIIALVLAAVGMATNHWIDVTEPRSTATSAREANPVVTNTKLPGLTVSYNVHHYGLWVGCHVERSFGEQRSCAYIGNRCYSDVCWIRNDRDTTCLDAKVTLVDQSCTSYQFTRVLVCLGMILLVMGTSLLVVASCVTSGRVAASGSGLTLLSSLLLCIAFVVFYVKEYAGVDGASDWAKLGWSFVLLIISWPVAAVAAIVGALGAVMVRDKDD 225          
BLAST of Gcaud9747.t1 vs. uniprot
Match: A0A1X6NX97_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NX97_PORUM)

HSP 1 Score: 99.0 bits (245), Expect = 8.730e-22
Identity = 65/202 (32.18%), Postives = 108/202 (53.47%), Query Frame = 0
Query:   13 SFVALVLVAVAIASNYWLKISLDADEQSSPLNPTTMDDGLNDLTIRYRLEHFGLWVGCHRELVFDKRSCAYIGASCYTDVCWVR----NGVDPTCLNFRLLPI-DNCAAYQATRAMVVIGTIFLILGSSVLVVSVCITSKSLSTAGAVLTFVSSIFLMIGFAVFYDRTHNFL-----DQIASIGWSFILLIVAWPLAFVAAV 204
            S VALVL +  +A+N+W+++          +NP  ++  +   T++Y   + GLW GC+RE      SCAYI   C T+VCW R      +D  C    L PI  +CAA+Q +R    IG   L++ ++ L  +  +T++  +  G + + + ++ +++  +VFY            D +ASIG+SF L++ A PLA +AAV
Sbjct:   13 SLVALVLASFGVATNHWVRLH----RPDGKMNPVEVNQQMAFTTVKYPARYLGLWYGCYRE-DGSAVSCAYITHRCTTNVCWKRMLRATVMDTVCQRNALGPIVPHCAAFQVSRITACIGLFLLVVAATCLASAFVVTNRGFAAVGGLASALGALAIVVATSVFYAHQMGAAAGLGADGLASIGYSFWLVMAAAPLALLAAV 209          
The following BLAST results are available for this feature:
BLAST of Gcaud9747.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J350_9FLOR2.430e-8965.58Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P4S8_PORUM1.600e-5748.31Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6NK28_PORUM1.620e-5142.59Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6NX97_PORUM8.730e-2232.18Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.140.150coord: 5..222
e-value: 1.3E-26
score: 95.3
NoneNo IPR availablePANTHERPTHR10671EPITHELIAL MEMBRANE PROTEIN-RELATEDcoord: 5..218
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..150
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 210..223
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 173..183
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..144
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 184..209
NoneNo IPR availableTMHMMTMhelixcoord: 149..171
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
IPR004031PMP-22/EMP/MP20/Claudin superfamilyPFAMPF13903Claudin_2coord: 15..205
e-value: 1.4E-11
score: 44.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_555_length_22204_cov_4.024239contigNODE_555_length_22204_cov_4.024239:16583..17330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9747.t1Gcaud9747.t1Gracilaria caudata M_176_S67 malemRNANODE_555_length_22204_cov_4.024239 16583..17330 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9747.t1 ID=Gcaud9747.t1|Name=Gcaud9747.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=224bp
MGAVLRVGAAFVSFVALVLVAVAIASNYWLKISLDADEQSSPLNPTTMDD
GLNDLTIRYRLEHFGLWVGCHRELVFDKRSCAYIGASCYTDVCWVRNGVD
PTCLNFRLLPIDNCAAYQATRAMVVIGTIFLILGSSVLVVSVCITSKSLS
TAGAVLTFVSSIFLMIGFAVFYDRTHNFLDQIASIGWSFILLIVAWPLAF
VAAVIALLASLQHQKQEEFEESG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin