Gcaud9714.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9714.t1
Unique NameGcaud9714.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length407
Homology
BLAST of Gcaud9714.t1 vs. uniprot
Match: A0A2V3IFD5_9FLOR (Thioredoxin domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFD5_9FLOR)

HSP 1 Score: 318 bits (814), Expect = 1.420e-101
Identity = 177/403 (43.92%), Postives = 242/403 (60.05%), Query Frame = 0
Query:    2 SSQVQLVANGSHLVRTLYAATITVLLLTSPFSSETTSAVRTVSQAAALTTCPSVQYVQYSLRPGERVQEPWR-WFRFVNDAPSVVRNLTLLPPLFPFIRLFHSQQTPSITDFYGSFDALVLARFISNACGVDLDFPRVASRDEFARAIRYNALGALLIVPMSEGRLQRQHLALAHAVSDAAQRRSSWVFSVVDSEKDVLFARRVANESLLFVNLAYDKAVLHDVSEVTADNIQSLMQRFEQISRRTVVRDASLVPFKQLLYFDGVSMGRSLLRFPKSDVSLRAFLSAQYTVAASRASVLWVVVIQTWCAYCQRIVPVYERFAQIASACDADVDVLFVQHTELLPPFLDRLVDGFPTVLRLELFEGVREVHEYVGEHELDALVDEHREWQSDRLWAAQGAMRFL 403
            ++ V  V + + L+R LYA +ITVLLLT+P++SET +A + +S+AAAL  C   QY+ Y LR  E V  P R WF   + +P    NL+ +PP FP IR+F +QQ P + D+ G+FD   LA F+++ C         +SRDEFA  +R   +G L++VPM  GR +   L +A +VSD  QRR  WVF VVDSE DVLF R V + SLL V+L  D AV+H +S+V   ++  L  R E I+ +   +    V    L YF+  +    L  +P   +SL +FL A+Y       SV+WVVV Q+WCAYCQRI+P Y RF+   S+ D DV VLFV + + LP FLD LVDG+PTVLR+EL  GV +V E +  H  D L+ +H + QSD L    G +  L
Sbjct:   51 ATAVHRVFSATELLRALYATSITVLLLTTPYTSETPAAEQALSRAAALVNCSRTQYLSYYLRLNETVLPPRRSWF--FSTSPDPPTNLSFVPPFFPHIRVFKNQQHPVVRDYRGAFDVYSLAAFLADVCDSPRSLLSFSSRDEFAEGVRRGMMGVLMVVPMKNGRFREDDLHVAESVSDVVQRRKGWVFGVVDSENDVLFLRNVPDRSLLMVDLRRDLAVVHALSDVKTQSVSLLFDRVEGIADKKRSQHR-FVRSSHLKYFEPFASSSPLFDYPTCYISLSSFLRAEYHQQQVEPSVVWVVVYQSWCAYCQRILPTYRRFSSTVSSSDVDVHVLFVDNVDELPSFLDDLVDGYPTVLRIELLRGVMDVRERLYGHRQDLLISDHCDRQSDALNRTAGVLDLL 450          
BLAST of Gcaud9714.t1 vs. uniprot
Match: R7QKP7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKP7_CHOCR)

HSP 1 Score: 94.4 bits (233), Expect = 1.920e-17
Identity = 126/436 (28.90%), Postives = 202/436 (46.33%), Query Frame = 0
Query:    1 MSSQVQLVANGSHLVRTLYAATITVLLLTSPFSSETTSAVRTVSQAAALTTCP--SVQYVQYSLRPGERVQEPWR--WFRF----VNDAPSVVRNLTLLPPLFPFIRLFHSQQTPSITDFY-GSFDALVLARFISNAC---------GVDLDFPRVA---SRDEFARAIR---YNALGALL--------IVPMSEGRLQRQHLALAHAVSDAAQR---RSSWVFSVVDSEKDVLFARR---VANE-SLLFVNLAYDKAVLHDVS-EVTADNIQSLMQRFEQ--ISRRTVVRDASLVPFK-----QLLYFDGVSMGRSLLRFPKSD--VSLRAFLSAQYTVAASRASVLWVVVIQ--TWCAYCQRIVPVYERFAQIASACDADVDVLFVQHTE--LLPPFLDRLVDGFPTVLRL-ELFEGVREVHEYVGEHELDALV 382
            +SS V+L+   SHL      + +TV+LLT+ +S ET SA + ++ A+ L  C   SV Y +  +   E  + P +  W R      + A +  RN+T   P  P IR+F +    ++   +  +F    LA  I   C         G   +  R     S+D FAR +R   + +LG L         IV   +GR +     +       A+R   R  W+ S+VD EK+     R   V  E ++  V+++ D+     +  +V+ + ++  + RFEQ    R +V     ++P +     ++L F  + +GR   RF   +  + LR++LS   +   S      VVV+    WC + QR++ VY R        D  VD + V   E  LLP FLD++VDGFPTVL + E  EG   V E+ G H ++A++
Sbjct:    8 LSSAVELI---SHLP----LSAVTVVLLTAYWSFETDSARQALNVASTLVDCDAHSVSYYEVPISVHELHRTPPQSSWARVPWTEAHRAATAARNVTQGVPFLPAIRVFRNDGHGTVPYTHVDTFAPGALASHIMLHCAPEGKGEKRGALAELSRYTTPVSKDRFAREMRKEEFRSLGVLFMVRGGARGIVDRWDGRWEAVAKGVGMVNKGKAERQDLRQRWILSIVDVEKEGEMGERNGVVDGEPAVTLVDVSGDRTETRRIGGDVSWEWVRDALLRFEQGFEKRSSVGGGTGVLPEEGDGRGKILSF--LRLGRKWRRFFSRECRLCLRSYLSGDMSGDTSGMCDGRVVVVAHAPWCGFSQRVMGVYRRLG------DEGVDTVMVGEREVGLLPRFLDKMVDGFPTVLVVREEREGEFSVEEFEGPHNMEAIM 428          
The following BLAST results are available for this feature:
BLAST of Gcaud9714.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFD5_9FLOR1.420e-10143.92Thioredoxin domain-containing protein n=1 Tax=Grac... [more]
R7QKP7_CHOCR1.920e-1728.90Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 301..383
e-value: 3.8E-7
score: 30.1
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 285..390
e-value: 1.1E-7
score: 33.5
NoneNo IPR availableCDDcd02961PDI_a_familycoord: 307..383
e-value: 7.74937E-9
score: 51.0721
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 275..387

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_743_length_18853_cov_4.482944contigNODE_743_length_18853_cov_4.482944:13092..14312 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9714.t1Gcaud9714.t1Gracilaria caudata M_176_S67 malemRNANODE_743_length_18853_cov_4.482944 13092..14312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9714.t1 ID=Gcaud9714.t1|Name=Gcaud9714.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=407bp
MSSQVQLVANGSHLVRTLYAATITVLLLTSPFSSETTSAVRTVSQAAALT
TCPSVQYVQYSLRPGERVQEPWRWFRFVNDAPSVVRNLTLLPPLFPFIRL
FHSQQTPSITDFYGSFDALVLARFISNACGVDLDFPRVASRDEFARAIRY
NALGALLIVPMSEGRLQRQHLALAHAVSDAAQRRSSWVFSVVDSEKDVLF
ARRVANESLLFVNLAYDKAVLHDVSEVTADNIQSLMQRFEQISRRTVVRD
ASLVPFKQLLYFDGVSMGRSLLRFPKSDVSLRAFLSAQYTVAASRASVLW
VVVIQTWCAYCQRIVPVYERFAQIASACDADVDVLFVQHTELLPPFLDRL
VDGFPTVLRLELFEGVREVHEYVGEHELDALVDEHREWQSDRLWAAQGAM
RFLEGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR036249Thioredoxin-like_sf