Gcaud9712.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9712.t2
Unique NameGcaud9712.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length253
Homology
BLAST of Gcaud9712.t2 vs. uniprot
Match: A0A2V3IFF8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFF8_9FLOR)

HSP 1 Score: 155 bits (392), Expect = 5.000e-43
Identity = 92/120 (76.67%), Postives = 108/120 (90.00%), Query Frame = 0
Query:   16 GLGMLRIGGREINPERVISAFSRTYFCLGPVCLRSGIGPGVXXXXXXXVIKGPMLPIGGESGNIEFLRQLPGGYQIMNVLRTIMRKFPGSKTGVGXXXXXXXXXXXXXXPAGGGGRMGGM 135
            G+G + I GR+IN +R++S FSRT+FC+GPVCLRSGIGPG+XXXXXX +IKGPMLP+G ++GN++FLRQLPGGYQIMNVL TIMRKFPGSKTGVG XXXXXXXXXXXX PAG GG +GGM
Sbjct:   15 GMGSISIAGRQINMDRIVSTFSRTFFCIGPVCLRSGIGPGIXXXXXXGIIKGPMLPLGAQAGNLDFLRQLPGGYQIMNVLSTIMRKFPGSKTGVGCXXXXXXXXXXXXAPAG-GGMVGGM 133          
BLAST of Gcaud9712.t2 vs. uniprot
Match: A0A7S0T6S3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6S3_9RHOD)

HSP 1 Score: 65.5 bits (158), Expect = 1.290e-9
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0
Query:   25 REINPERVISAFSRTYFCLGPVCLRSGIGPGVXXXXXXXVIKGPMLP--IGGESG-----NIEF--LRQLPGGYQIMNVLRTIMRKFPGSKTGVG 110
            R + P+ +     RT+FC+GPVCLRSG+G   XXXXXX ++ G   P  +G  SG     NI +  + ++PGGY  +++L+ ++R+FPG+K  VG
Sbjct:   46 RSLRPQDL----QRTFFCVGPVCLRSGVGLXXXXXXXXGIVGGGWRPFVLGNTSGSDGGFNIPYAVIGRVPGGYMAIDILKQVLRRFPGAKAAVG 136          
BLAST of Gcaud9712.t2 vs. uniprot
Match: A0A7S3ECW8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECW8_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 3.730e-8
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 0
Query:   33 ISAFSRTYFCLGPVCLRSGIGPGVXXXXXXXVIK--GPMLPIGGESGNI------EFLRQLPGGYQIMNVLRTIMRKFPGSKTGV 109
            +  F RT+ C+GP+CLRSG+G G XXXXXXX     G      G  G +        L +LPGGY ++NVLRT+ ++F G+ TGV
Sbjct:   43 LKQFERTFLCIGPICLRSGMGVGXXXXXXXXXXXXYGVYKFQPGSEGTVMGFNPYNMLGRLPGGYMLLNVLRTVQQQFSGASTGV 127          
The following BLAST results are available for this feature:
BLAST of Gcaud9712.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IFF8_9FLOR5.000e-4376.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0T6S3_9RHOD1.290e-942.11Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S3ECW8_9RHOD3.730e-845.88Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 209..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..211
NoneNo IPR availableTMHMMTMhelixcoord: 108..130
NoneNo IPR availableTMHMMTMhelixcoord: 140..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_743_length_18853_cov_4.482944contigNODE_743_length_18853_cov_4.482944:11273..12031 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9712.t2Gcaud9712.t2Gracilaria caudata M_176_S67 malemRNANODE_743_length_18853_cov_4.482944 11273..12031 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9712.t2 ID=Gcaud9712.t2|Name=Gcaud9712.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=253bp
MQEAAAVGGGGGAQAGLGMLRIGGREINPERVISAFSRTYFCLGPVCLRS
GIGPGVGVGCGVGVIKGPMLPIGGESGNIEFLRQLPGGYQIMNVLRTIMR
KFPGSKTGVGCGIGAGFGFGIGIAPAGGGGRMGGMGMGAMGGMGGMGGMG
GMGGMGGMGGMGSMNAGMGAGMGAGMGMQGAGTPNSNNQGYGSTSATPPV
GLNSSSTATKALEDRVKGIEDKLEKLEERISLSERMKHLEERIDEMQKRK
RR*
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