Gcaud9712.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9712.t1
Unique NameGcaud9712.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Homology
BLAST of Gcaud9712.t1 vs. uniprot
Match: A0A2V3IFF8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFF8_9FLOR)

HSP 1 Score: 153 bits (386), Expect = 2.230e-42
Identity = 90/116 (77.59%), Postives = 105/116 (90.52%), Query Frame = 0
Query:    2 LRIGGREINPERVISAFSRTYFCLGPVCLRSGIGPGVXXXXXXXVIKGPMLPIGGESGNIEFLRQLPGGYQIMNVLRTIMRKFPGSKTGVGXXXXXXXXXXXXXXPAGGGGRMGGM 117
            + I GR+IN +R++S FSRT+FC+GPVCLRSGIGPG+XXXXXX +IKGPMLP+G ++GN++FLRQLPGGYQIMNVL TIMRKFPGSKTGVG XXXXXXXXXXXX PAG GG +GGM
Sbjct:   19 ISIAGRQINMDRIVSTFSRTFFCIGPVCLRSGIGPGIXXXXXXGIIKGPMLPLGAQAGNLDFLRQLPGGYQIMNVLSTIMRKFPGSKTGVGCXXXXXXXXXXXXAPAG-GGMVGGM 133          
BLAST of Gcaud9712.t1 vs. uniprot
Match: A0A7S0T6S3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6S3_9RHOD)

HSP 1 Score: 66.2 bits (160), Expect = 5.100e-10
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 0
Query:    7 REINPERVISAFSRTYFCLGPVCLRSGIGPGVXXXXXXXVIKGPMLP--IGGESG-----NIEF--LRQLPGGYQIMNVLRTIMRKFPGSKTGVG 92
            R + P+ +     RT+FC+GPVCLRSG+G   XXXXXX ++ G   P  +G  SG     NI +  + ++PGGY  +++L+ ++R+FPG+K  VG
Sbjct:   46 RSLRPQDL----QRTFFCVGPVCLRSGVGLXXXXXXXXGIVGGGWRPFVLGNTSGSDGGFNIPYAVIGRVPGGYMAIDILKQVLRRFPGAKAAVG 136          
BLAST of Gcaud9712.t1 vs. uniprot
Match: A0A7S3ECW8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECW8_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 2.900e-8
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0
Query:    2 LRIGGREINPERVISAFSRTYFCLGPVCLRSGIGPGVXXXXXXXVIK--GPMLPIGGESGNI------EFLRQLPGGYQIMNVLRTIMRKFPGSKTGV 91
            L++   ++N ++    F RT+ C+GP+CLRSG+G G XXXXXXX     G      G  G +        L +LPGGY ++NVLRT+ ++F G+ TGV
Sbjct:   34 LKLPELKVNLKQ----FERTFLCIGPICLRSGMGVGXXXXXXXXXXXXYGVYKFQPGSEGTVMGFNPYNMLGRLPGGYMLLNVLRTVQQQFSGASTGV 127          
The following BLAST results are available for this feature:
BLAST of Gcaud9712.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IFF8_9FLOR2.230e-4277.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0T6S3_9RHOD5.100e-1042.11Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S3ECW8_9RHOD2.900e-841.84Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 191..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..193
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
NoneNo IPR availableTMHMMTMhelixcoord: 90..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_743_length_18853_cov_4.482944contigNODE_743_length_18853_cov_4.482944:11327..12031 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9712.t1Gcaud9712.t1Gracilaria caudata M_176_S67 malemRNANODE_743_length_18853_cov_4.482944 11327..12031 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9712.t1 ID=Gcaud9712.t1|Name=Gcaud9712.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MLRIGGREINPERVISAFSRTYFCLGPVCLRSGIGPGVGVGCGVGVIKGP
MLPIGGESGNIEFLRQLPGGYQIMNVLRTIMRKFPGSKTGVGCGIGAGFG
FGIGIAPAGGGGRMGGMGMGAMGGMGGMGGMGGMGGMGGMGGMGSMNAGM
GAGMGAGMGMQGAGTPNSNNQGYGSTSATPPVGLNSSSTATKALEDRVKG
IEDKLEKLEERISLSERMKHLEERIDEMQKRKRR*
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