Gcaud9709.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9709.t1
Unique NameGcaud9709.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length159
Homology
BLAST of Gcaud9709.t1 vs. uniprot
Match: A0A2V3IFI7_9FLOR (Trigger_N domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFI7_9FLOR)

HSP 1 Score: 206 bits (523), Expect = 4.470e-65
Identity = 97/154 (62.99%), Postives = 131/154 (85.06%), Query Frame = 0
Query:    1 MTLLSHEKLDVVLNTQDGEVAKYKLELEIPGSVSKFKRRESIQAMKQNANFKGFRKGTIPPFVMKELEGFVLHDSCNVVIEDAAKELELQTVEGKDALAELDMKELKQRFRIGEDFVFSCEIQLRSVNVEKSTEELEDVVTY-AGEVPNIDIAK 153
            MTLLSHEKLDVVL+T+DGE+AKYKLELE+PG++SK KRRESIQ++K+NA+FKGFRKGTIPPF+MKE++ FVL+D CN VIE+A KEL+L  ++G++A  ++D++E+K+RF IGEDF F+CE+QL++ N E   EELEDVVT    ++  +D+ K
Sbjct:   31 MTLLSHEKLDVVLSTKDGEIAKYKLELEVPGALSKSKRRESIQSVKKNASFKGFRKGTIPPFIMKEIDSFVLNDVCNTVIEEATKELQLSAIDGEEAQPKMDLEEMKKRFNIGEDFYFTCEVQLQAANFETPFEELEDVVTIDVDDISTVDVTK 184          
BLAST of Gcaud9709.t1 vs. uniprot
Match: R7QTQ2_CHOCR (Trigger_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTQ2_CHOCR)

HSP 1 Score: 122 bits (306), Expect = 4.510e-32
Identity = 63/142 (44.37%), Postives = 95/142 (66.90%), Query Frame = 0
Query:    1 MTLLSHEKLDVVLNTQDGEVAKYKLELEIPGSVSKFKRRESIQAMKQNANFKGFRKGTIPPFVMKELEGFVLHDSCNVVIEDAAKELELQTVEGKDALAELDMKELKQRFRIGEDFVFSCEIQLR---SVNVEKSTEELEDV 139
            M+++SHEKL V+  ++  E+A+YK+ELEIP S SK KRR+S+QA+++NA+FKGFRKGTIPPF+MK++                   L+L+  +G  A  ++D +E+  RF +GEDF FS E+ LR   S++ E  T+++ DV
Sbjct:   32 MSIVSHEKLQVLFESETSELAQYKIELEIPASHSKDKRRQSVQALRKNADFKGFRKGTIPPFIMKDIXXXXXXXXXXXXXXXXXXXLKLEKTDGDAADPDIDFEEMMGRFNVGEDFRFSLEMPLRKVLSLDTESLTQDILDV 173          
BLAST of Gcaud9709.t1 vs. uniprot
Match: A0A5J4YSI7_PORPP (Trigger factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSI7_PORPP)

HSP 1 Score: 98.2 bits (243), Expect = 1.290e-22
Identity = 50/135 (37.04%), Postives = 87/135 (64.44%), Query Frame = 0
Query:    8 KLDVVLNTQDGEVAKYKLELEIPGSVSKFKRRESIQAMKQNANFKGFRKGTIPPFVMKELEGFVLHDSCNVVIEDAAKELELQTVEGKDALAELD--MKELKQRFRIGEDFVFSCEIQLRSVNVEKS-TEELEDV 139
            +L+ V N     +AKY +++ +PG  +    + ++++ KQ+A+FKGFRKGTIPPF+MKE+E F + +  N  ++ A +E +L  +EG+ A+ EL     EL++ F++GE F F   I L++ + E S T+++ D+
Sbjct:   65 ELEEVFNAGGKRIAKYSIKVTVPGETNLEIYKSTLRSAKQSADFKGFRKGTIPPFMMKEIEVFAMQECLNAALDRAVEENQLMYLEGEAAMPELKPPFDELRKTFKVGEPFSFEAHISLQTRDAEDSETDDVTDI 199          
BLAST of Gcaud9709.t1 vs. uniprot
Match: A0A7S0ZKE3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKE3_9RHOD)

HSP 1 Score: 97.4 bits (241), Expect = 4.570e-22
Identity = 50/128 (39.06%), Postives = 79/128 (61.72%), Query Frame = 0
Query:    9 LDVVLNTQDGEVAKYKLELEIPGSVSKFKRRESIQAMKQNANFKGFRKGTIPPFVMKELEGFVLHDSCNVVIEDAAKELELQTVEGKDALAELDM--KELKQRFRIGEDFVFSCEIQLRSVNVEKSTE 134
            ++ V  + D  ++KY+    IPG++SK   + +I+  K+NA+FKGFRKGTIPPF+  E+  F L D  N ++++A K  EL+ +EG  A  E D+  K++K  F IG+ F F+ +I L+    +K  E
Sbjct:   93 IENVFESGDESISKYRFTGNIPGAMSKESFQTTIREFKKNADFKGFRKGTIPPFMKAEIHAFTLQDCINTLMQNAMKSQELELLEGDAADPEFDIPFKQMKSNFEIGKPFEFTAQIALKKAQSDKDKE 220          
BLAST of Gcaud9709.t1 vs. uniprot
Match: L1JH75_GUITC (Trigger_N domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JH75_GUITC)

HSP 1 Score: 64.3 bits (155), Expect = 9.650e-10
Identity = 38/122 (31.15%), Postives = 64/122 (52.46%), Query Frame = 0
Query:   13 LNTQDGEVAKYKLELEIPGSVSKFKRRESIQAMKQNANFKGFRKGTIPPFVMKELEGFVLHDSCNVVIEDAAKE--LELQTVEGKDALAELDMKELKQRFRIGEDFVFSCEIQLRSVNVEKS 132
            L   +G  AKYK  + + G +SK      ++  K+NA F GFRKG+IPPF++ +++ FV+ +     + +A +E  LEL     K  L +  + EL + F     F ++ E  L+    E++
Sbjct:   70 LEEGEGNAAKYKFTVTVDGQMSKDSYTAIMKDFKKNAQFPGFRKGSIPPFMIPKVKQFVILECLEKSLGEAVREQALELADENNKPNLDDAQVAELTKTFNENNGFKYTIEALLKPSTAEEA 191          
The following BLAST results are available for this feature:
BLAST of Gcaud9709.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IFI7_9FLOR4.470e-6562.99Trigger_N domain-containing protein n=1 Tax=Gracil... [more]
R7QTQ2_CHOCR4.510e-3244.37Trigger_N domain-containing protein n=1 Tax=Chondr... [more]
A0A5J4YSI7_PORPP1.290e-2237.04Trigger factor n=1 Tax=Porphyridium purpureum TaxI... [more]
A0A7S0ZKE3_9RHOD4.570e-2239.06Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
L1JH75_GUITC9.650e-1031.15Trigger_N domain-containing protein n=2 Tax=Guilla... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 18..126
e-value: 2.0E-9
score: 37.9
IPR036611Trigger factor ribosome-binding domain superfamilyGENE3D3.30.70.1050coord: 10..129
e-value: 1.6E-9
score: 39.8
IPR036611Trigger factor ribosome-binding domain superfamilySUPERFAMILY102735Trigger factor ribosome-binding domaincoord: 21..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_743_length_18853_cov_4.482944contigNODE_743_length_18853_cov_4.482944:4253..4729 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9709.t1Gcaud9709.t1Gracilaria caudata M_176_S67 malemRNANODE_743_length_18853_cov_4.482944 4253..4729 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9709.t1 ID=Gcaud9709.t1|Name=Gcaud9709.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=159bp
MTLLSHEKLDVVLNTQDGEVAKYKLELEIPGSVSKFKRRESIQAMKQNAN
FKGFRKGTIPPFVMKELEGFVLHDSCNVVIEDAAKELELQTVEGKDALAE
LDMKELKQRFRIGEDFVFSCEIQLRSVNVEKSTEELEDVVTYAGEVPNID
IAKLPENQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008881Trigger_fac_ribosome-bd_bac
IPR036611Trigger_fac_ribosome-bd_sf