Gcaud9704.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9704.t1
Unique NameGcaud9704.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length484
Homology
BLAST of Gcaud9704.t1 vs. uniprot
Match: A0A2V3IMN6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMN6_9FLOR)

HSP 1 Score: 487 bits (1253), Expect = 2.070e-166
Identity = 259/457 (56.67%), Postives = 330/457 (72.21%), Query Frame = 0
Query:    1 MVTVGVLAALINIAVLFVVAIADRAIELIVRNFATSRLITHRRAPVVHDSDTWLPFLPRSVVKYHRHPAILCTVLCTILLVTAELVSELGVDVSKTCKPAAFRGRVIAPGDITDSFTHIELSGTCFLLQSLQFDEGNLTRVRAGIPRRLTGQECFKCIDEQNPDIISGCKVRYLRHFNAGELNISITTTEGTFKTLTSSFKETSGNQTEYEGCGDLTFNGHEVSTFLIYKLPHSGGLWYFEYNDQDHLNVMKALAPKGNQKGRPLTQATMGPVHLTEIKCDNNVLDPETFAEVIRMYRTIQLENPITPAHLDVESNQFDQLTADAVYRAVLAAKIIDDKHDSDGTFYKYTSCGKYNWSFLFPLVTCLTILLVLGVTSHVF--RAGGFPSLQVPFNSHSWYDHARSLESVDSPQ----HEGRKRKSGYFSNIFDELKIVDDFQCDDTMPAGRIVLQSR 451
            MV VG LAALIN+A+L VVA+ADRAIELIVRNFATSRL++H + PVVHDSDTWLPFLPRSVVKY RHPAILCTVL    L+T+ELV+ELGVDVS TC P   RG VIA G  +++FT IELSGTCFLL+S++F EG+L  +RAGIPR+LTG EC KC  E + +IISGC V+Y R F   ++ I + +T+GTFKTLT+ FKETS     Y+G GDLTFNG   STF+I+     G L YFEYNDQDH+  +K +A    QKG P  + T G VH++EI C  NVL  E FA  +RMYRT+QLENPI PA  +  ++ ++ LT D++YRAVLAAK+IDDKH  D T+Y YTSCGKYNW+F+ P++ CL ++L+LG+ S +   R G      +PFNS +WY+HA+ L+   +P      E RK K GYF+N+FDE+++V++ +     P  R VL S+
Sbjct:    1 MVGVGGLAALINVAILLVVAVADRAIELIVRNFATSRLLSHGKVPVVHDSDTWLPFLPRSVVKYRRHPAILCTVLXXXXLITSELVTELGVDVSNTCSPELHRGAVIAKGPTSENFTDIELSGTCFLLRSMEFAEGSLKCLRAGIPRKLTGNECLKCAHEDS-EIISGCDVQYKRKFLPEQVEIEVNSTDGTFKTLTTLFKETSSGAV-YDGKGDLTFNGDTFSTFMIHY-SEEGPLLYFEYNDQDHIRHLKDIA--NAQKGEPARERTKGNVHMSEINCKTNVLTNEVFARFVRMYRTVQLENPIFPAKFNDTADLYEPLTPDSLYRAVLAAKVIDDKHTPDATYYVYTSCGKYNWNFMLPMLVCLGVILILGLVSCMIGERMG---ETYIPFNSRTWYEHAQDLDDPLTPYVGAPTESRKPK-GYFANLFDEIQLVEEGE--GQRPRRRFVLSSK 446          
BLAST of Gcaud9704.t1 vs. uniprot
Match: A0A2V3IPN6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPN6_9FLOR)

HSP 1 Score: 435 bits (1119), Expect = 3.780e-146
Identity = 231/438 (52.74%), Postives = 298/438 (68.04%), Query Frame = 0
Query:    1 MVTVGVLAALINIAVLFVVAIADRAIELIVRNFATSRLITHRRAPVVHDSDTWLPFLPRSVVKYHRHPAILCTVLCTILLVTAELVSELGVDVSKTCKPAAFRGRVIAPGDITDSFTHIELSGTCFLLQSLQFDEGNLTRVRAGIPRRLTGQECFKCIDEQNPDIISGCKVRYLRHFNAGELNISITTTEGTFKTLTSSFKETSGNQTEYEGCGDLTFNGHEVSTFLIYKLPHSGGLWYFEYNDQDHLNVMKALAPKGNQKGRPLTQATMGPVHLTEIKCDNNVLDPETFAEVIRMYRTIQLENPITPAHLDVESNQFDQLTADAVYRAVLAAKIIDDKHDSDGTFYKYTSCGKYNWSFLFPLVTCLTILLVLGVTSHVFRAGGFPSLQVPFNSHSWYDHARSLESVDSPQHEGRKRKSGYFSNI-----FDELKIVD 433
            MVTVGVLAALIN+ VL VV+ ADRAIE IVRNFAT RL +HRRAPV+HDSDTWLPFLPRSVVK+H++PAILCT+  TILL+T+E VSELG+DV+K CKP   +G VI+P DIT +FT IELSG+CF++QS++F EG L RV+ GIP  L G ECF C+   + DIISGC VR ++ +    L++S+ TT G FKT+T SF     ++T + G GDLTFNG  +S FL   + H   L Y EY+DQ H+  +K  + K  Q    +++ T   V    I+C  N L    FAEV+RMYRT+QLENPITPA  +  S  F  ++ + +YRA LAAKIIDD+HD +GT+Y YTSCG+YNW FL P++  L  L VL   S VFR     S  VP+NS SW+ HA+ L+ +    H  R R+    SN+     FDE+ +++
Sbjct:    1 MVTVGVLAALINVGVLIVVSFADRAIEHIVRNFATCRLRSHRRAPVIHDSDTWLPFLPRSVVKFHKYPAILCTLFITILLITSEFVSELGIDVNKKCKPQPRKGSVISPDDITHNFTDIELSGSCFVVQSVEFVEGQLKRVQPGIPTELKGSECFSCLQTSHSDIISGCSVRQIQEYAPRTLHVSVKTTRGIFKTVTKSFLHME-SKTPFTGYGDLTFNGENLSCFLFQHI-HGKSLNYLEYDDQAHIRSLKDKSEK--QYPNEVSEPTNSVVRKYRIRCKTNQLSAANFAEVVRMYRTVQLENPITPAMFNHTSGSFPPMSNEDIYRATLAAKIIDDQHDPNGTYYIYTSCGEYNWIFLLPMIISLLALGVLFSASRVFRPASPQSFPVPYNSRSWFHHAQELQEM----HRSRAREEVVQSNLRSSEGFDEVMLIE 430          
BLAST of Gcaud9704.t1 vs. uniprot
Match: A0A2V3IMN5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMN5_9FLOR)

HSP 1 Score: 398 bits (1022), Expect = 3.000e-131
Identity = 212/442 (47.96%), Postives = 293/442 (66.29%), Query Frame = 0
Query:    1 MVTVGVLAALINIAVLFVVAIADRAIELIVRNFATSRLITHRRAPVVHDSDTWLPFLPRSVVKYHRHPAILCTVLCTILLVTAELVSELGVDVSKTCKPAAFRGRVIAPGDITDSFTHIELSGTCFLLQSLQFDEGNLTRVRAGIPRRLTGQECFKCID-EQNPDIISGCKVRYLRHFNAGELNISITTTEGTFKTLTSSFKETSGNQTEY---EGCGDLTFNGHEVSTFLIYKLPH-SGGLWYFEYNDQDHLNVMKALAPKGNQKGRPLTQATMGPVHLTEIKCDNNVLDPETFAEVIRMYRTIQLENPITPAHLDVESNQFDQLTADAVYRAVLAAKIIDDKHDSDGTFYKYTSCGKYNWSFLFPLVTCLTILLVLGVTSHVFRAGGFPSLQVPFNSHSWYDHARSLESVD-SPQHEGRKRKSGYFSNIFDELKIVDDFQ 436
            M+TVGVLAALIN+AVL ++   DRAIELI+RNFA++RL +HRRAP+VHDSDTWLP+LPRSVVKYHRHPAILC V+ TILLV AEL++ELGVDVS+ C P   RG VIA  + T +FT IEL G  F LQS  F E   TR++AGIPR +TG EC  C+   Q PDIISGC V+  R + AGEL ++I TT G FKT+T+SF ET  N   Y   +G GDLT NG   ++ + +  P+    + Y EY +Q+H+  +   A   +Q    +T+ T   V +  I C  N L P+ F E + +YRTIQLENP+ PA    + ++F ++  ++VY +VL+ KI+DD+H+  G +Y+YT+CGKY   F+ PL+ C+T++++LG+ S  FRA      ++P++S +W+ H R   S D  P  EGR        +  DE+ +++++Q
Sbjct:    1 MITVGVLAALINVAVLILITFTDRAIELILRNFASNRLASHRRAPIVHDSDTWLPYLPRSVVKYHRHPAILCVVIFTILLVPAELITELGVDVSERCSPMKERGPVIAKNNATPNFTSIELGGMAFFLQSTSFAEAPFTRIQAGIPRMITGMECISCLKGSQYPDIISGCTVQLDRVYQAGELRVTIQTTLGPFKTITTSFNETKPNGVAYSRSKGMGDLTRNGEHWASHMFHPRPNRENEVLYLEYTNQEHIGSLFEKAVNSSQA--LVTEPTGSSVRMYAISCSTNKLSPDHFIEALMVYRTIQLENPVRPAQYQEKEDRFMEINPESVYLSVLSLKIVDDEHEI-GDYYRYTTCGKYKMVFIAPLLICITVIVILGIVSVCFRADRRLRNRIPYSSRTWFQHVRKQGSTDCDPIEEGRMT---CIRHNPDEMVVLEEYQ 436          
The following BLAST results are available for this feature:
BLAST of Gcaud9704.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IMN6_9FLOR2.070e-16656.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IPN6_9FLOR3.780e-14652.74Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMN5_9FLOR3.000e-13147.96Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 357..380
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..356
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 381..483
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 4..21
NoneNo IPR availableTMHMMTMhelixcoord: 357..379

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1848_length_8093_cov_4.678955contigNODE_1848_length_8093_cov_4.678955:3547..5083 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9704.t1Gcaud9704.t1Gracilaria caudata M_176_S67 malemRNANODE_1848_length_8093_cov_4.678955 3547..5083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9704.t1 ID=Gcaud9704.t1|Name=Gcaud9704.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=484bp
MVTVGVLAALINIAVLFVVAIADRAIELIVRNFATSRLITHRRAPVVHDS
DTWLPFLPRSVVKYHRHPAILCTVLCTILLVTAELVSELGVDVSKTCKPA
AFRGRVIAPGDITDSFTHIELSGTCFLLQSLQFDEGNLTRVRAGIPRRLT
GQECFKCIDEQNPDIISGCKVRYLRHFNAGELNISITTTEGTFKTLTSSF
KETSGNQTEYEGCGDLTFNGHEVSTFLIYKLPHSGGLWYFEYNDQDHLNV
MKALAPKGNQKGRPLTQATMGPVHLTEIKCDNNVLDPETFAEVIRMYRTI
QLENPITPAHLDVESNQFDQLTADAVYRAVLAAKIIDDKHDSDGTFYKYT
SCGKYNWSFLFPLVTCLTILLVLGVTSHVFRAGGFPSLQVPFNSHSWYDH
ARSLESVDSPQHEGRKRKSGYFSNIFDELKIVDDFQCDDTMPAGRIVLQS
RQQDDQVPRAPSNFIGAGHLGSTTSVDAFQGNP*
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