Gcaud9697.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9697.t1
Unique NameGcaud9697.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length211
Homology
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A2V3J0T6_9FLOR (60S ribosomal protein L13-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0T6_9FLOR)

HSP 1 Score: 350 bits (899), Expect = 4.120e-121
Identity = 179/210 (85.24%), Postives = 196/210 (93.33%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEEAEKAKK 210
            MKHNNVIPNIHFHK+WDTRVRTWF+QPMRKRRRRRAR +KAAK APRPVDGPLRPIV C TNKYNMR+RLGRGFS+EELKEAGIP+K A TIGIAVD RRKNRSVD+MQ+NVQRLKEY+SKLILFPKN AKPKAGEATK+DLAVAAQLT KLMPI  K  ++EVRTITNED+AK+AYRSLRIERTNQKY+GIRKK+AA+KAA EAEKAKK
Sbjct:    1 MKHNNVIPNIHFHKDWDTRVRTWFNQPMRKRRRRRARNLKAAKSAPRPVDGPLRPIVHCPTNKYNMRLRLGRGFSIEELKEAGIPFKLAPTIGIAVDQRRKNRSVDAMQDNVQRLKEYRSKLILFPKNPAKPKAGEATKDDLAVAAQLTDKLMPIPSKKPTIEVRTITNEDRAKYAYRSLRIERTNQKYEGIRKKRAAEKAAAEAEKAKK 210          
BLAST of Gcaud9697.t1 vs. uniprot
Match: R7Q712_CHOCR (60S ribosomal protein L13 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q712_CHOCR)

HSP 1 Score: 305 bits (781), Expect = 4.140e-103
Identity = 155/207 (74.88%), Postives = 182/207 (87.92%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEEAEK 207
            MKHNNVIPN HF KEW  RVRTWF+QPMRKRRRR AR +K AK APRP+DG LRPIV C TNKYNM VRLGRGFS+EELKEAGI  ++A TIGIAVDPRRKNRS+D+MQ+NVQRLKE+K+KLI+FPKN AKPK GEA KE+LA+AAQL GKLMPIQ  ++ +EVR ITN+D+AK AYRSLRIE++N+K +GIRKK+AA+KAAE+A+K
Sbjct:    1 MKHNNVIPNNHFRKEWQLRVRTWFEQPMRKRRRRSARVLKYAKSAPRPIDGLLRPIVRCPTNKYNMHVRLGRGFSLEELKEAGIAVRYAPTIGIAVDPRRKNRSLDAMQDNVQRLKEFKTKLIVFPKNPAKPKEGEAKKEELAMAAQLEGKLMPIQKTTAEIEVRPITNDDRAKTAYRSLRIEKSNKKLEGIRKKRAAEKAAEKADK 207          
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A7S0T5W9_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T5W9_9RHOD)

HSP 1 Score: 264 bits (674), Expect = 7.130e-87
Identity = 133/207 (64.25%), Postives = 160/207 (77.29%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEEAEK 207
            MKHNN++PN HFHKEW  RVRTWF+QPMRK+RRR AR +KAA++APRPVDG LRP+V C T KYNM+ RLGRGF++EELKEA +P K A T+GIAVD RRKNRSV+  Q NVQRLKEYKS+LI+FPK A KPKAG++   +LA A Q  GKLMPI     ++E R IT E+K    Y  LR+ER N K+DG+RKK AA+ AA E +K
Sbjct:    1 MKHNNMVPNAHFHKEWQLRVRTWFNQPMRKKRRRTARQLKAARIAPRPVDGALRPVVQCPTVKYNMKQRLGRGFTLEELKEAEMPKKLAGTVGIAVDHRRKNRSVEGFQRNVQRLKEYKSRLIVFPKRAGKPKAGDSDASELATATQFAGKLMPIVGVEGAIEARAITEEEKQTRVYAKLRLERANAKHDGMRKKLAAEAAAAEEDK 207          
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A7S1EQE0_9RHOD (60S ribosomal protein L13 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQE0_9RHOD)

HSP 1 Score: 255 bits (652), Expect = 1.380e-83
Identity = 131/204 (64.22%), Postives = 159/204 (77.94%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEE 204
            MKHNNV+PN HFHKEW  RVRTWF+QPMRK+RRR  R +KAA++APRPVDG LRP+V C T KYNM+ RLGRGF++EELKEAG+  K A TIGIAVD RRKNRSV+S Q+NVQRLKEYKS+LI+FPK   K K+G++   DL  A QLTGKLMP    SS++E R +T+E+K+   Y  L  ER N + +G+RKK AA+KAA E
Sbjct:    1 MKHNNVVPNAHFHKEWQLRVRTWFNQPMRKKRRRTQRQMKAARVAPRPVDGMLRPVVHCPTVKYNMKERLGRGFTLEELKEAGVLRKMAKTIGIAVDHRRKNRSVESFQQNVQRLKEYKSRLIVFPKRVGKAKSGDSDAADLTTATQLTGKLMPPVKASSTLEARAVTDEEKSSSVYAKLCTERMNVRNEGMRKKVAAEKAAAE 204          
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A5J4YKD5_PORPP (60S ribosomal protein L13 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKD5_PORPP)

HSP 1 Score: 244 bits (623), Expect = 4.030e-79
Identity = 125/203 (61.58%), Postives = 154/203 (75.86%), Query Frame = 0
Query:    2 KHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEE 204
            KHNN+IPN HF KEW  RV+TWF+QPMRK+RRR  R  KAA++APRPVDG +RP+V C T KYN + RLGRGF++EELKEAG+  K A TIGI+VD RRKNRSV+  Q+NVQRLKEYKSKLI+FPK A KPK G++   +LA A+Q TGKLMPI     + E R IT E+K   AY  +R ER N +++GIRKK+A +K  E+
Sbjct:    3 KHNNMIPNNHFKKEWQLRVKTWFNQPMRKKRRRTTRQTKAARIAPRPVDGMVRPVVRCPTVKYNQKERLGRGFTLEELKEAGVARKMAKTIGISVDHRRKNRSVEGFQQNVQRLKEYKSKLIIFPKRAGKPKTGDSEPAELATASQFTGKLMPIVRSKDAPESRAITAEEKDFKAYAQIRQERANVRWEGIRKKRALEKEDED 205          
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A061SBD4_9CHLO (60S ribosomal protein L13 n=4 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SBD4_9CHLO)

HSP 1 Score: 244 bits (622), Expect = 5.920e-79
Identity = 128/204 (62.75%), Postives = 156/204 (76.47%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEE 204
            MKHNNVIPN HF K+W   V+TWF+QP RK RRR AR  KA K+ PRPVDGPLRP V C T +YNM+ RLGRGFS+EELKEAGI  K A TIGIAVD RR+N+S+++MQENV RLK YKS L++FP+   KPKAG+A+ E+L  A+QLTGKLMPI+   + +E   IT+E K   AY  LR+ER N++ +GIRKK+A QKA EE
Sbjct:    1 MKHNNVIPNGHFKKKWQNYVKTWFNQPARKIRRRNARAEKARKVFPRPVDGPLRPAVRCQTVRYNMKQRLGRGFSLEELKEAGISKKVAPTIGIAVDHRRRNKSLEAMQENVNRLKAYKSNLMIFPRRQNKPKAGDASAEELKTASQLTGKLMPIKATKAPMEYMAITDEMKGFNAYAQLRLERMNKRLEGIRKKRAEQKAQEE 204          
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A7S1T839_9CHLO (60S ribosomal protein L13 n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T839_9CHLO)

HSP 1 Score: 241 bits (615), Expect = 6.630e-78
Identity = 127/204 (62.25%), Postives = 157/204 (76.96%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEE 204
            MKHNNVIPN HF K+W   VRTWF+QP RK RRR AR  KA K+ PRPVDG LRP+V   + +YNM+VRLGRGF++EELKEAGI  K A TIGIAVD RR+N+S++ MQENV RLK YKS L++FPK A KPKAG+A+ E+L  A+QLTGKLMP++ +++ +E  TIT+E K   AY  LR+ER N +  GIRKK+A +KA EE
Sbjct:    1 MKHNNVIPNGHFKKKWQFYVRTWFNQPARKIRRRNARAAKAEKVFPRPVDGALRPVVHSQSQRYNMKVRLGRGFTLEELKEAGISAKLAPTIGIAVDHRRRNKSLEGMQENVNRLKSYKSNLVVFPKRANKPKAGDASAEELKTASQLTGKLMPVKKEAAPLEFVTITSEMKDTPAYGKLRLERMNARMAGIRKKRADEKAKEE 204          
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A1X6P1G1_PORUM (60S ribosomal protein L13 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1G1_PORUM)

HSP 1 Score: 239 bits (610), Expect = 3.940e-77
Identity = 129/209 (61.72%), Postives = 156/209 (74.64%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEEAEKAK 209
            +KHNNVI N HF KEW  RV+ WF+QP RK+RRR AR +KAA++APRPVDGPLRP+V C TNKYNM+ RLGRGF+ +ELK AGI    AS+IGIAVD RRKNRS +SM  NV+RL+EYKSKL+LFP+ A KPKAG++    L  A QLTGKL PI    ++VE R IT+EDKA  AY  LR  R++ KY G R K+AA+  A+  EK K
Sbjct:    2 VKHNNVIANNHFRKEWQLRVKCWFNQPARKQRRRSARHLKAARVAPRPVDGPLRPVVRCPTNKYNMKQRLGRGFTFDELKAAGILVPQASSIGIAVDHRRKNRSQESMDSNVERLREYKSKLVLFPRRAGKPKAGDSDAATLDTATQLTGKLQPIVKAKATVESRAITDEDKAAKAYDVLRQARSDLKYHGARVKRAAELKAKAEEKKK 210          
BLAST of Gcaud9697.t1 vs. uniprot
Match: M2XZW1_GALSU (60S ribosomal protein L13e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XZW1_GALSU)

HSP 1 Score: 239 bits (609), Expect = 5.400e-77
Identity = 125/204 (61.27%), Postives = 160/204 (78.43%), Query Frame = 0
Query:    1 MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSS-SVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAE 203
            ++HNNV+PN HFHK+W  RV+TWF+QPMRK+RRR AR  KAA+LAPRP  GPLRPIV C T KYNM VRLGRGF++EELKEA I  +FA TIGI+VD RRKNRSV+S+Q NVQRLKEY S+LILFP+   KPK+G++   +LA+A Q+ G ++PIQ  +S SVE RT+T E+++K AY++LR+ R   K  G +KKK  ++A E
Sbjct:    2 VRHNNVVPNGHFHKDWQRRVKTWFNQPMRKKRRRLARQKKAARLAPRPAKGPLRPIVHCPTVKYNMNVRLGRGFTLEELKEAKINPQFARTIGISVDRRRKNRSVESLQTNVQRLKEYLSRLILFPRRHGKPKSGDSDPSELAMAKQVFGDVLPIQSTTSTSVETRTVTEEERSKSAYQTLRVARKQAKNIGKQKKKEKEQAEE 205          
BLAST of Gcaud9697.t1 vs. uniprot
Match: A0A6P8I3C7_ACTTE (60S ribosomal protein L13 n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8I3C7_ACTTE)

HSP 1 Score: 237 bits (604), Expect = 3.320e-76
Identity = 124/208 (59.62%), Postives = 156/208 (75.00%), Query Frame = 0
Query:    2 KHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVDGPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRRKNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTGKLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQKAAEEAEKAK 209
            K NNVIPN HFHK+W   V+TWF+QP RK+RRR AR  KA K+APRPV G +RPIV C T KYN ++R GRGF+++ELK AGIP K A TIGIAVD RRKNRS +S+Q NVQRLKEYKSKLI+FP+ A KPK G++   DL  A QL G++MPIQ  S  ++ R IT+E+K    ++++RIER+N +  GIR+K+A +KA  EA K K
Sbjct:    4 KRNNVIPNAHFHKDWQRYVKTWFNQPGRKKRRRTARKEKAIKIAPRPVAGAIRPIVRCPTFKYNTKIRAGRGFTLDELKAAGIPRKVAQTIGIAVDHRRKNRSTESLQANVQRLKEYKSKLIIFPRKAGKPKQGDSEAADLENAVQLQGEVMPIQQPSVQIKARPITDEEKKFSVFKTMRIERSNARLIGIREKRAKEKAEAEAMKKK 211          
The following BLAST results are available for this feature:
BLAST of Gcaud9697.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0T6_9FLOR4.120e-12185.2460S ribosomal protein L13-2 n=1 Tax=Gracilariopsis... [more]
R7Q712_CHOCR4.140e-10374.8860S ribosomal protein L13 n=1 Tax=Chondrus crispus... [more]
A0A7S0T5W9_9RHOD7.130e-8764.25Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A7S1EQE0_9RHOD1.380e-8364.2260S ribosomal protein L13 n=1 Tax=Timspurckia olig... [more]
A0A5J4YKD5_PORPP4.030e-7961.5860S ribosomal protein L13 n=1 Tax=Porphyridium pur... [more]
A0A061SBD4_9CHLO5.920e-7962.7560S ribosomal protein L13 n=4 Tax=Tetraselmis sp. ... [more]
A0A7S1T839_9CHLO6.630e-7862.2560S ribosomal protein L13 n=1 Tax=Tetraselmis chui... [more]
A0A1X6P1G1_PORUM3.940e-7761.7260S ribosomal protein L13 n=1 Tax=Porphyra umbilic... [more]
M2XZW1_GALSU5.400e-7761.2760S ribosomal protein L13e n=1 Tax=Galdieria sulph... [more]
A0A6P8I3C7_ACTTE3.320e-7659.6260S ribosomal protein L13 n=2 Tax=Actiniaria TaxID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.110coord: 164..209
e-value: 9.8E-10
score: 40.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..210
NoneNo IPR availablePANTHERPTHR11722:SF060S RIBOSOMAL PROTEIN L13coord: 1..207
IPR001380Ribosomal protein L13ePFAMPF01294Ribosomal_L13ecoord: 6..184
e-value: 6.6E-76
score: 254.2
IPR001380Ribosomal protein L13ePANTHERPTHR1172260S RIBOSOMAL PROTEIN L13coord: 1..207
IPR001380Ribosomal protein L13eHAMAPMF_00499Ribosomal_L13ecoord: 44..127
score: 21.46426
IPR018256Ribosomal protein L13e, conserved sitePROSITEPS01104RIBOSOMAL_L13Ecoord: 69..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_82_length_55453_cov_4.345977contigNODE_82_length_55453_cov_4.345977:23848..24480 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9697.t1Gcaud9697.t1Gracilaria caudata M_176_S67 malemRNANODE_82_length_55453_cov_4.345977 23848..24480 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9697.t1 ID=Gcaud9697.t1|Name=Gcaud9697.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=211bp
MKHNNVIPNIHFHKEWDTRVRTWFDQPMRKRRRRRARTIKAAKLAPRPVD
GPLRPIVTCTTNKYNMRVRLGRGFSVEELKEAGIPYKFASTIGIAVDPRR
KNRSVDSMQENVQRLKEYKSKLILFPKNAAKPKAGEATKEDLAVAAQLTG
KLMPIQPKSSSVEVRTITNEDKAKFAYRSLRIERTNQKYDGIRKKKAAQK
AAEEAEKAKK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001380Ribosomal_L13e
IPR018256Ribosomal_L13e_CS