Gcaud9687.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9687.t1
Unique Name	Gcaud9687.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	345

Homology

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BLAST of Gcaud9687.t1 vs. uniprot
Match: A0A2V3J0S4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0S4_9FLOR)

HSP 1 Score: 420 bits (1080), Expect = 1.370e-143
Identity = 218/322 (67.70%), Postives = 251/322 (77.95%), Query Frame = 0

Query:    2 DDDSPPLRPPVRSPLLLPSERIPLAPPHIDHNASTPSAYESPTPPTSPSTDYPYGAVARVVPGSPGMDGY--RERRTLRVSDPLQTVHLITDSSQSECSQGPYLDHTQMEISQLRQRIADTTILGFAVFVVTGIVFLVMTTGFTAMVANQNSPRLEIFSAWPDGGVIPLEYGCHAPDGHPISIPLGWQDAPPSATNLVILFSHPGALHDSPVDPVHWFVTDIPIGPGEDDHIPANASVNPSLMPHGAVQRANVFSREGYYWPPCSNTTSVFTIHAYAVEAPAVIEDIEDAREIMMRFDGVPFAKLRGTYSHSVPRASPDLGS 321
            D+ + PLRP  RSPLL PSERIPLAP H DHNASTPSAYESP+PPTSPST+YPYGAVARVVP     D Y  + RR   ++DP QTVHLITDSS SE S   Y+DHT++EIS+LRQR+ DT ILG  +  +T IV ++M +G   MVAN+NS +LEIFS WPDGGVIPL+YGCHA   HPISIPL W++ P SATNL++LFSHPGALHDS VDPVHWFVT+I +       +  NASVN +LMP GAVQRAN FS +GYYWPPCSNTTSVFT+HAYAVEAPAVIED  DAREI+MR DGVP AKL GTYS   P ++ DL S
Sbjct:    3 DEQTVPLRPVPRSPLLSPSERIPLAPAHTDHNASTPSAYESPSPPTSPSTEYPYGAVARVVP-----DSYVTQNRRLNGLADPQQTVHLITDSSASEYSADRYVDHTRLEISRLRQRLMDTYILGAVIVAITTIVSVIMASGLATMVANRNSAKLEIFSDWPDGGVIPLKYGCHAHGHHPISIPLRWENVPASATNLIVLFSHPGALHDSTVDPVHWFVTNIRLDEAAPSFMAPNASVNAALMPGGAVQRANAFSHQGYYWPPCSNTTSVFTVHAYAVEAPAVIEDTYDAREIIMRLDGVPGAKLHGTYSRHSP-SNMDLSS 318

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BLAST of Gcaud9687.t1 vs. uniprot
Match: R7Q6F2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6F2_CHOCR)

HSP 1 Score: 249 bits (635), Expect = 5.430e-76
Identity = 116/198 (58.59%), Postives = 152/198 (76.77%), Query Frame = 0

Query:  112 QLRQRIADTTILGFAVFVVTGIVFLVMTTGFTAMVANQNSPRLEIFSAWPDGGVIPLEYGCHAPDGHPISIPLGWQDAPPSATNLVILFSHPGALHDSPVDPVHWFVTDIPIGPGEDDHIPANASVNPSLMPHGAVQRANVFSREGYYWPPC-SNTTSVFTIHAYAVEAPAVIEDIEDAREIMMRFDGVPFAKLRGTY 308
            +LR+ + D  ILG +V V+T IVF+++ +G T ++AN+N P+LE+FS WP+GG+IPL+YGCHAPDGHP+SIPL W++ P +ATNLV+LF++PGA+    +DPVHWF+TDIP+   +D  IPANAS+NP LMP  + QRAN  S +G YWPPC +N TS F +H YA+EAP VI D  DAREIM RF GVP A+L G Y
Sbjct:  151 ELREGMKDRYILGCSVLVMTAIVFVIIVSGMTTILANRNYPQLEVFSDWPNGGLIPLKYGCHAPDGHPVSIPLRWRNVPRAATNLVVLFANPGAISKRRMDPVHWFITDIPLEDDKDGSIPANASLNPELMPPNSKQRANAGSSKGVYWPPCVTNGTSFFIVHIYAIEAPPVISDFRDAREIMNRFVGVPVARLTGWY 348

The following BLAST results are available for this feature:

BLAST of Gcaud9687.t1 vs. uniprot

BLAST of Gcaud9687.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J0S4_9FLOR	1.370e-143	67.70	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7Q6F2_CHOCR	5.430e-76	58.59	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036610	PEBP-like superfamily	GENE3D	3.90.280.10		coord: 157..308 e-value: 1.7E-16 score: 62.5
IPR036610	PEBP-like superfamily	SUPERFAMILY	49777	PEBP-like	coord: 158..277
IPR008914	Phosphatidylethanolamine-binding protein	PFAM	PF01161	PBP	coord: 167..297 e-value: 8.3E-7 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..344
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..344
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..121
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 148..344
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 122..147
None	No IPR available	TMHMM	TMhelix		coord: 122..144

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_82_length_55453_cov_4.345977	contig	NODE_82_length_55453_cov_4.345977:3918..4952 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9687.t1	Gcaud9687.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_82_length_55453_cov_4.345977 3918..4952 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9687.t1 ID=Gcaud9687.t1|Name=Gcaud9687.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MDDDSPPLRPPVRSPLLLPSERIPLAPPHIDHNASTPSAYESPTPPTSPS
TDYPYGAVARVVPGSPGMDGYRERRTLRVSDPLQTVHLITDSSQSECSQG
PYLDHTQMEISQLRQRIADTTILGFAVFVVTGIVFLVMTTGFTAMVANQN
SPRLEIFSAWPDGGVIPLEYGCHAPDGHPISIPLGWQDAPPSATNLVILF
SHPGALHDSPVDPVHWFVTDIPIGPGEDDHIPANASVNPSLMPHGAVQRA
NVFSREGYYWPPCSNTTSVFTIHAYAVEAPAVIEDIEDAREIMMRFDGVP
FAKLRGTYSHSVPRASPDLGSDAHSPPSSPGHSTHPKHVQQSQT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036610	PEBP-like_sf
IPR008914	PEBP