Gcaud9653.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9653.t1
Unique Name	Gcaud9653.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	289

Homology

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BLAST of Gcaud9653.t1 vs. uniprot
Match: A0A2V3J647_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J647_9FLOR)

HSP 1 Score: 210 bits (534), Expect = 3.830e-60
Identity = 121/284 (42.61%), Postives = 181/284 (63.73%), Query Frame = 0

Query:    3 IPPQQQSNSAVHPLANNSSHPSLSAQLSSHTVLTNSASHQSKSQHNTGSISTKHAATQPAKHARASKPRDKLSRAAKLLKSRTKQQLIEQMLNWVRASEISEDLLRGTLAPIDVAHYISQCRSHFEIVYQLLSDRHTPAGQQYDAHAYQRCKNALMSFKSLVMEIGRTFVEASVWMDVLRFCLMAAQLNAQLPQWPDPAHNKSKLQLHSRLEQFATRAINTMTKMKHPPIMEAHDATTLVDQYRPLLPTVAAKLAKLNSILRPMNTLMPSEQQHSSERPNTESS 286
            + P +  ++ +   +NN SHPS SA  SSH+VLTN+AS QSKSQ  +GS ST+H     AK A+ +KPRDK S+  K LK  TK+QL E M+  V +S + E  +   +  +D+ H++++C+   + ++++LSD         DA+AY++CK ALM+FK++V  +GRT +EAS+W+DV+R+C+ AAQ+NAQ P W D AHNK+K Q+H++L Q A RA+  +++ K      A DA +L+D  R   P VA  LA+L +  R +   +P      S+ PNTESS
Sbjct:  309 LAPARHPHNPLQSSSNNPSHPSQSAHFSSHSVLTNAASIQSKSQLTSGSTSTQHPPMH-AKSAKTTKPRDKYSKLRKRLKCCTKEQLFEHMMQLVHSSAVHEKAVLDNIPSVDINHFVAECQKSCDAIFRVLSDGEPLESLVPDANAYRKCKKALMAFKNVVSVMGRTLIEASLWIDVIRYCIPAAQINAQTPVWHDAAHNKTKSQVHAKLNQLAMRAVKALSRAKETAF--APDAVSLIDACRTPFPQVATSLAELVASGR-IQVGIPPVPHLGSQLPNTESS 588

The following BLAST results are available for this feature:

BLAST of Gcaud9653.t1 vs. uniprot

BLAST of Gcaud9653.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J647_9FLOR	3.830e-60	42.61	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038422	Cut8/Sts1 superfamily	GENE3D	1.20.58.1590	Tethering factor for nuclear proteasome Cut8/Sts1	coord: 62..278 e-value: 2.6E-20 score: 74.8
IPR013868	Tethering factor for nuclear proteasome Cut8/Sts1	PFAM	PF08559	Cut8	coord: 40..232 e-value: 2.3E-16 score: 60.2
IPR013868	Tethering factor for nuclear proteasome Cut8/Sts1	PANTHER	PTHR28032	FI02826P	coord: 35..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_429_length_25870_cov_4.602971	contig	NODE_429_length_25870_cov_4.602971:1106..1971 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9653.t1	Gcaud9653.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_429_length_25870_cov_4.602971 1106..1971 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9653.t1 ID=Gcaud9653.t1|Name=Gcaud9653.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=289bp
XLIPPQQQSNSAVHPLANNSSHPSLSAQLSSHTVLTNSASHQSKSQHNTG
SISTKHAATQPAKHARASKPRDKLSRAAKLLKSRTKQQLIEQMLNWVRAS
EISEDLLRGTLAPIDVAHYISQCRSHFEIVYQLLSDRHTPAGQQYDAHAY
QRCKNALMSFKSLVMEIGRTFVEASVWMDVLRFCLMAAQLNAQLPQWPDP
AHNKSKLQLHSRLEQFATRAINTMTKMKHPPIMEAHDATTLVDQYRPLLP
TVAAKLAKLNSILRPMNTLMPSEQQHSSERPNTESSAA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038422	Cut8/Sts1_sf
IPR013868	Cut8/Sts1_fam