Gcaud9613.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9613.t1
Unique NameGcaud9613.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length304
Homology
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BLAST of Gcaud9613.t1 vs. uniprot
Match: A0A2V3J414_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J414_9FLOR)

HSP 1 Score: 410 bits (1055), Expect = 7.860e-142
Identity = 216/303 (71.29%), Postives = 250/303 (82.51%), Query Frame = 0 
Query:    1 MSSSPAWLSVALSTLATVEDEPAEVLRTGIRKLRQSHILHHLNRWARHVWRPAISAEQLQALTDNPQPSSVESLNAGAASLLAALLEAVRRCKAEPWLQVIGVMFLADDPWAIDVGHEKQGQVEKCVRAIEALFADSDAVASTAAALNSETVELPVDGVFAASTDDSFAELRCRVAALQLQLDDVTAVVRRNEQNTKDLLSSFHFWSLLLLDELRSYKMAVRSPTNTPAQSQVVSELSAGLPPMRPLSSAWRTDAIPSEHSRGSSSSSNGNLPS-GTASVSARTVKPEAN-RPKRVFRDGKWI 301
            M+SSPAWL+VALSTLATVE+EPA+VL  GIRKL Q HILHHLNRWARHVWRPAI+ EQLQALT+ P+P+SV+ LNAGAASLL ALLEAVRRC AE WLQV+GVMFLA DPWAIDVGHE+Q QV KC  AIE LF +S  VA T AALN+ET+ELPVDGVFAAS D+SFAELRCRVAALQLQLDDVTAVVR+NE+NTKDLLSSFHFWSLLLLDELRSYK AVRSP +TP QSQ  +++ AGLPPMRPL + ++ D    +     S+++NG   + G AS++     P+   +PKRVFRDGKW+
Sbjct:    1 MTSSPAWLTVALSTLATVEEEPAQVLHHGIRKLPQFHILHHLNRWARHVWRPAITPEQLQALTNRPEPASVQRLNAGAASLLGALLEAVRRCDAERWLQVLGVMFLAADPWAIDVGHEEQAQVNKCAHAIELLFENSQQVAITVAALNTETIELPVDGVFAASKDESFAELRCRVAALQLQLDDVTAVVRQNEKNTKDLLSSFHFWSLLLLDELRSYKHAVRSPVSTPTQSQA-ADMGAGLPPMRPLPAGYKRDGASGDVYAAFSAATNGAWSAKGNASIATSPRAPKGELKPKRVFRDGKWV 302
The following BLAST results are available for this feature:
BLAST of Gcaud9613.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J414_9FLOR7.860e-14271.29Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..291
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_655_length_20202_cov_4.276913contigNODE_655_length_20202_cov_4.276913:8430..9341 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9613.t1Gcaud9613.t1Gracilaria caudata M_176_S67 malemRNANODE_655_length_20202_cov_4.276913 8430..9341 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9613.t1 ID=Gcaud9613.t1|Name=Gcaud9613.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
MSSSPAWLSVALSTLATVEDEPAEVLRTGIRKLRQSHILHHLNRWARHVW
RPAISAEQLQALTDNPQPSSVESLNAGAASLLAALLEAVRRCKAEPWLQV
IGVMFLADDPWAIDVGHEKQGQVEKCVRAIEALFADSDAVASTAAALNSE
TVELPVDGVFAASTDDSFAELRCRVAALQLQLDDVTAVVRRNEQNTKDLL
SSFHFWSLLLLDELRSYKMAVRSPTNTPAQSQVVSELSAGLPPMRPLSSA
WRTDAIPSEHSRGSSSSSNGNLPSGTASVSARTVKPEANRPKRVFRDGKW
ITL*
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