Gcaud9608.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9608.t1
Unique NameGcaud9608.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length224
Homology
BLAST of Gcaud9608.t1 vs. uniprot
Match: A0A2V3IWZ5_9FLOR (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWZ5_9FLOR)

HSP 1 Score: 392 bits (1007), Expect = 1.080e-136
Identity = 186/221 (84.16%), Postives = 198/221 (89.59%), Query Frame = 0
Query:    1 LGAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAPPCRDLAALKKQQ 221
              AGLNVHRDA HNTHDTPF+FT+ NY+RI AILKRFP+NYAASAVIPLLDLAQRQNGGWLPLSAMNKVA VL MPPIRVYEVASFYTMFNRE+IGK+NVQVCTTTPCMLRGGYD+L ACK HLGIGVG DT DGLFHLMEVECLGACVNAPMVQINDHFYEDLTP SVK VL+ L+ GK P IGPQI+RNGCEGP+GRTTLT+P  AP CRDL ALK  Q
Sbjct:   30 FAAGLNVHRDAAHNTHDTPFDFTEHNYQRIRAILKRFPKNYAASAVIPLLDLAQRQNGGWLPLSAMNKVATVLSMPPIRVYEVASFYTMFNRERIGKYNVQVCTTTPCMLRGGYDILDACKSHLGIGVGADTDDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPNSVKAVLTDLKNGKHPTIGPQIDRNGCEGPKGRTTLTSPPPAPYCRDLDALKPAQ 250          
BLAST of Gcaud9608.t1 vs. uniprot
Match: R7QLY4_CHOCR (NUOE homolog, NADH dehydrogenase (Ubiquinone) subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLY4_CHOCR)

HSP 1 Score: 368 bits (944), Expect = 1.020e-126
Identity = 173/218 (79.36%), Postives = 193/218 (88.53%), Query Frame = 0
Query:    4 GLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAPPCRDLAALKKQQ 221
            GLNVHRD+  NT DTPF+F+D NY +I  ILKR+P+NYAASAVIPLLDLAQRQNGGWLPLSAMNKVA +L M PIRVYEVASFYTMFNR+KIGK+NVQVCTTTPCMLRG YD+L A K+HLG+ VGGDT DGLFH+ME ECLGACVNAPMVQINDHFYEDLT ++VK VLS L+AG+QPKIGPQI+RNGCEGPQGRT+L  PAG P CRDLAA K+ Q
Sbjct:   56 GLNVHRDSADNTVDTPFDFSDENYAQIQTILKRYPKNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAKLLGMAPIRVYEVASFYTMFNRDKIGKYNVQVCTTTPCMLRGAYDILDAVKEHLGVEVGGDTADGLFHVMEAECLGACVNAPMVQINDHFYEDLTKKTVKSVLSDLKAGRQPKIGPQIDRNGCEGPQGRTSLKTPAGGPFCRDLAAAKEAQ 273          
BLAST of Gcaud9608.t1 vs. uniprot
Match: UPI001E1D8692 (LOW QUALITY PROTEIN: NADH-quinone oxidoreductase subunit E-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D8692)

HSP 1 Score: 336 bits (862), Expect = 1.770e-114
Identity = 160/214 (74.77%), Postives = 177/214 (82.71%), Query Frame = 0
Query:    1 LGAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAPPCRDL 214
            L AGLNVHRDA +N  DTPFEF++ NY +I  I KR+P+NYAASAVIPLLDLAQRQ GGWLPL+AMNKVA VL MPPIRVYEVASFYTMFNREKIG++N+QVCTTTPCMLRGGYD+L A K  +G+ VGGDT DGLFHLMEVECLGACVNAPMVQIND FYEDLTP S+  VL  L+  K+  IGPQ  RNGCEGP GRT+L  P   P CRDL
Sbjct:   37 LAAGLNVHRDAAYNREDTPFEFSEENYAKIAVIRKRYPKNYAASAVIPLLDLAQRQAGGWLPLAAMNKVARVLDMPPIRVYEVASFYTMFNREKIGRYNIQVCTTTPCMLRGGYDILDAIKAKIGVDVGGDTDDGLFHLMEVECLGACVNAPMVQINDDFYEDLTPASISVVLDNLRTXKKHSIGPQNGRNGCEGPMGRTSLKMPPPGPFCRDL 250          
BLAST of Gcaud9608.t1 vs. uniprot
Match: A0A7S1XCL2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XCL2_9RHOD)

HSP 1 Score: 319 bits (817), Expect = 1.420e-107
Identity = 149/214 (69.63%), Postives = 175/214 (81.78%), Query Frame = 0
Query:    1 LGAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAPPCRDL 214
               GLNVHR+ P+NT + PF+FT  NY  I  ILK++P NY ASAVIPLLDLAQRQ GGWLPL+AMNKVA VL MPP+RVYEVA+F+TMFNREKIGK+NVQ+CTTTPCMLRGGY +L A K+HLGI VGGDT DGLFHLMEVECLGACVNAPM+QINDH+YEDLTP++   VL +L+ G++P+IGPQ  R GC G QG+T+L      P CR+L
Sbjct:   50 FAGGLNVHREDPNNTAEAPFDFTSENYEEIGRILKKYPANYKASAVIPLLDLAQRQCGGWLPLAAMNKVARVLGMPPMRVYEVATFFTMFNREKIGKYNVQICTTTPCMLRGGYGILDAIKKHLGIEVGGDTSDGLFHLMEVECLGACVNAPMMQINDHYYEDLTPETAVAVLESLRRGEKPQIGPQNGRIGCLGIQGKTSLQEAPSGPYCREL 263          
BLAST of Gcaud9608.t1 vs. uniprot
Match: A0A5J4YIZ6_PORPP (NADH dehydrogenase ubiquinone flavoprotein 2, mitochondrial n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIZ6_PORPP)

HSP 1 Score: 315 bits (807), Expect = 2.300e-105
Identity = 147/212 (69.34%), Postives = 172/212 (81.13%), Query Frame = 0
Query:    5 LNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAPPCRDLAA 216
            +N HRD PHNT +TPF+FTD NY +I  +LK++P NY +SAVIP LDLAQRQ GGWLPL+AMNKVA VL M P+RVYEVA+FYTM+NREKIGK+N+QVCTTTPCM+RGGY+VL AC+++LGI VGGDTPDGLFHLMEVECLGACVNAPMVQIND FYEDLTP+S  +VL + Q GK    GPQ  R+ C GPQG+TTL      P   +L A
Sbjct:  101 MNQHRDVPHNTEETPFDFTDENYTKIAELLKKYPSNYKSSAVIPALDLAQRQCGGWLPLAAMNKVANVLEMAPMRVYEVATFYTMYNREKIGKYNIQVCTTTPCMIRGGYEVLKACEEYLGIKVGGDTPDGLFHLMEVECLGACVNAPMVQINDDFYEDLTPESTVKVLKSFQEGKPLPYGPQNGRHTCVGPQGKTTLFEEPSGPSAPNLDA 312          
BLAST of Gcaud9608.t1 vs. uniprot
Match: M1V6R9_CYAM1 (NADH dehydrogenase I flavoprotein 24kDa subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V6R9_CYAM1)

HSP 1 Score: 285 bits (730), Expect = 1.390e-94
Identity = 135/214 (63.08%), Postives = 161/214 (75.23%), Query Frame = 0
Query:    1 LGAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAPPCRDL 214
            L    NVHRD+  N+  T F+F++ NY++I  ILKR+P NY  SAVIP+LDLAQR+ GGWLPL+AMNKVA VL M P+RVYE+A+FYTMFN   IGK+NVQVCTTTPCMLRG YD+L AC++  G   GGD+PDGLFH+MEVECLGAC NAPM+QIND +YEDLTPQS K VL + + G   K GPQ+ R    G QG+TTL      P CRDL
Sbjct:   36 LAGRSNVHRDSEGNSEFTTFDFSEDNYKKIAEILKRYPVNYKQSAVIPVLDLAQRECGGWLPLAAMNKVAQVLGMQPMRVYEIATFYTMFNTVPIGKYNVQVCTTTPCMLRGAYDILRACEEESGARAGGDSPDGLFHIMEVECLGACANAPMMQINDDYYEDLTPQSAKAVLKSFRDGNPLKPGPQVARKSSMGIQGKTTLLEEPPGPSCRDL 249          
BLAST of Gcaud9608.t1 vs. uniprot
Match: UPI000333B4D5 (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI000333B4D5)

HSP 1 Score: 276 bits (706), Expect = 5.960e-91
Identity = 130/208 (62.50%), Postives = 162/208 (77.88%), Query Frame = 0
Query:    2 GAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAP 209
            G  L VHRD P N  DTPF+FT  NY+RI+ I+K +P  + A+AV+P+LDLAQRQNG WLP+SAMNKVA VL++PP+RVYEVA+FYTM+NR+ +GK+++QVCTTTPCMLR    +L A ++ LGI VG  TPD LF L+EVECLGACVNAPMVQINDH+YEDLTP+ ++E++  L+AGK PK GP+  R  CE   G TTLT P   P
Sbjct:   34 GGALFVHRDTPENNPDTPFDFTPENYKRIEGIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILEAIQRKLGIKVGETTPDRLFTLIEVECLGACVNAPMVQINDHYYEDLTPKDIEEIIDELKAGKIPKPGPRNGRFSCEPAGGLTTLTEPPKGP 240          
BLAST of Gcaud9608.t1 vs. uniprot
Match: UPI000643B5D1 (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial isoform X1 n=2 Tax=Laurasiatheria TaxID=314145 RepID=UPI000643B5D1)

HSP 1 Score: 275 bits (704), Expect = 1.730e-90
Identity = 129/208 (62.02%), Postives = 163/208 (78.37%), Query Frame = 0
Query:    2 GAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAP 209
            G  L VHRD P N  DTPF+FT  NY+RI+AI+K +P  + A+AV+P+LDLAQRQNG WLP+SAMNKVA VL++PP+RVYEVA+FYTM+NR+ +GK+++QVCTTTPCMLR    +L A ++ LGI VG  TPD LF L+EVECLGACVNAPMVQIND++YEDLTP+ ++E++  L+AGK PK GP+  R  CE   G T+LT P   P
Sbjct:   45 GGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKMPKPGPRSGRFSCEPAGGLTSLTEPPKGP 251          
BLAST of Gcaud9608.t1 vs. uniprot
Match: G1R5J3_NOMLE (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial n=13 Tax=Catarrhini TaxID=9526 RepID=G1R5J3_NOMLE)

HSP 1 Score: 275 bits (702), Expect = 2.500e-90
Identity = 129/208 (62.02%), Postives = 163/208 (78.37%), Query Frame = 0
Query:    2 GAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAP 209
            G  L VHRD P N  DTPF+FT  NY+RI+AI+K +P  + A+AV+P+LDLAQRQNG WLP+SAMNKVA VL++PP+RVYEVA+FYTM+NR+ +GK+++QVCTTTPCMLR    +L A ++ LGI VG  TPD LF L+EVECLGACVNAPMVQIND++YEDLTP+ ++E++  L+AGK PK GP+  R  CE   G T+LT P   P
Sbjct:   35 GGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKGP 241          
BLAST of Gcaud9608.t1 vs. uniprot
Match: A0A2K5NUZ2_CERAT (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial n=10 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K5NUZ2_CERAT)

HSP 1 Score: 274 bits (701), Expect = 2.620e-90
Identity = 129/208 (62.02%), Postives = 163/208 (78.37%), Query Frame = 0
Query:    2 GAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLLDLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNVQVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRTTLTAPAGAP 209
            G  L VHRD P N  DTPF+FT  NY+RI+AI+K +P  + A+AV+P+LDLAQRQNG WLP+SAMNKVA VL++PP+RVYEVA+FYTM+NR+ +GK+++QVCTTTPCMLR    +L A ++ LGI VG  TPD LF L+EVECLGACVNAPMVQIND++YEDLTP+ ++E++  L+AGK PK GP+  R  CE   G T+LT P   P
Sbjct:   26 GGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKGP 232          
The following BLAST results are available for this feature:
BLAST of Gcaud9608.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWZ5_9FLOR1.080e-13684.16NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
R7QLY4_CHOCR1.020e-12679.36NUOE homolog, NADH dehydrogenase (Ubiquinone) subu... [more]
UPI001E1D86921.770e-11474.77LOW QUALITY PROTEIN: NADH-quinone oxidoreductase s... [more]
A0A7S1XCL2_9RHOD1.420e-10769.63Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YIZ6_PORPP2.300e-10569.34NADH dehydrogenase ubiquinone flavoprotein 2, mito... [more]
M1V6R9_CYAM11.390e-9463.08NADH dehydrogenase I flavoprotein 24kDa subunit n=... [more]
UPI000333B4D55.960e-9162.50NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
UPI000643B5D11.730e-9062.02NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
G1R5J3_NOMLE2.500e-9062.02NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
A0A2K5NUZ2_CERAT2.620e-9062.02NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041921NADH-quinone oxidoreductase subunit E, N-terminalGENE3D1.10.10.1590coord: 20..93
e-value: 1.6E-23
score: 84.5
IPR002023NADH-quinone oxidoreductase subunit E-likePIRSFPIRSF000216NDH-1_Ecoord: 5..223
e-value: 1.8E-77
score: 256.1
IPR002023NADH-quinone oxidoreductase subunit E-likeTIGRFAMTIGR01958TIGR01958coord: 30..176
e-value: 1.9E-53
score: 178.5
NoneNo IPR availablePFAMPF012572Fe-2S_thioredxcoord: 30..176
e-value: 1.3E-57
score: 193.7
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 95..194
e-value: 3.4E-31
score: 109.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..223
NoneNo IPR availablePANTHERPTHR10371NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIALcoord: 4..214
IPR042128NuoE domainCDDcd03064TRX_Fd_NuoEcoord: 97..176
e-value: 7.21402E-38
score: 124.938
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 22..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2792_length_4682_cov_3.584404contigNODE_2792_length_4682_cov_3.584404:1588..2259 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9608.t1Gcaud9608.t1Gracilaria caudata M_176_S67 malemRNANODE_2792_length_4682_cov_3.584404 1588..2259 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9608.t1 ID=Gcaud9608.t1|Name=Gcaud9608.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=224bp
LGAGLNVHRDAPHNTHDTPFEFTDANYRRIDAILKRFPRNYAASAVIPLL
DLAQRQNGGWLPLSAMNKVAAVLRMPPIRVYEVASFYTMFNREKIGKFNV
QVCTTTPCMLRGGYDVLHACKQHLGIGVGGDTPDGLFHLMEVECLGACVN
APMVQINDHFYEDLTPQSVKEVLSALQAGKQPKIGPQIERNGCEGPQGRT
TLTAPAGAPPCRDLAALKKQQTQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041921NuoE_N
IPR002023NuoE-like
IPR042128NuoE_dom
IPR036249Thioredoxin-like_sf