Gcaud9563.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9563.t1
Unique Name	Gcaud9563.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	345

Homology

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BLAST of Gcaud9563.t1 vs. uniprot
Match: A0A2V3J5R9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5R9_9FLOR)

HSP 1 Score: 317 bits (811), Expect = 1.710e-103
Identity = 193/356 (54.21%), Postives = 232/356 (65.17%), Query Frame = 0

Query:    1 MASSSADFVLDEGLDEDEDVLVFQSGQHYA------APESTTTSAQHATQDTIPEPRQQTSPTDKEKSSPATGAPTAVIIDGLPISSSRADLDSFLDSAPITNVRLRRLEKDGLLRVRVQFADSIAATAALNKDGADFRGSVIAVKVASDERWEASNAEQTARHRQQP-----PQKMLPDAKAVQTGFWNAFAAARNVAERLEKGARHLSEDLERRLHVSETVEQTKTAIVNLDQQYGVSKTVGEVXXXXXXXXXXXXXXXXXXXXXXXXXTNVSGAAGVVAREMDESFRVSDRARGALNDVIQNDAVGDVAKGVVGALEGDTSTRKKRTQPTAEEKEEIP-SSEQSNSAHFEVGG 344
            M SS+ADFVLDEGLDEDEDVL FQS  H        +P  T +    +          Q +P  ++       APTAVIIDGLPIS+SRADLD+ LD APITNVRLRRLEKD LLRVRVQF  +  A  AL KDG DFRG+VI+VK A++ERW+AS  + + RH   P     P   LPDAKAVQ+GFW+AFAAA+NVAERLE+GARHL +DLERRLHV+E VEQTK AI  LDQQY VSKTV E+                         T+VSG A +VARE+DESFRV DRAR A+   +QNDAV  VAK  +  L+ + S  K ++QP  EE E+ P S++ ++  HFEVGG
Sbjct:    1 MTSSAADFVLDEGLDEDEDVLAFQSSLHPPPIQEKNSPPQTPSEPPQSLPSXXXXSXXQNAPLPQD-------APTAVIIDGLPISASRADLDALLDGAPITNVRLRRLEKDRLLRVRVQFEHAQTAAKALEKDGTDFRGAVISVKKATEERWQASFLD-SPRHTPNPRSPRSPTLSLPDAKAVQSGFWSAFAAAKNVAERLEQGARHLGDDLERRLHVTEKVEQTKRAIDQLDQQYSVSKTVVEMTERGKQAAVQVDKSLGLSDGVNKVSTDVSGVARIVAREVDESFRVGDRARNAVQGAMQNDAVSGVAKRAMATLDRNASPGKSKSQPMTEEPEQPPPSTDDASGQHFEVGG 348

[Close]

BLAST of Gcaud9563.t1 vs. uniprot
Match: R7QRC8_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRC8_CHOCR)

HSP 1 Score: 168 bits (426), Expect = 1.100e-45
Identity = 126/364 (34.62%), Postives = 178/364 (48.90%), Query Frame = 0

Query:    1 MASSSADFVLDEGLDEDEDVLVFQSGQHYAAPESTTTSAQHATQDTIPEPRQQTSPTDKEKSSPATGAP-----TAVIIDGLPISSSRADLDSFLDSA--PITNVRLRRLEKDGLLRVRVQFADSIAATAALNKDGADFRGSVIAVKV--ASDERWEASNAEQ--------TARHRQQPPQKMLPDAKAVQTGFWNAFAAARNVAERLEKGARHLSEDLERRLHVSETVEQTKTAIVNLDQQYGVSKTVGEVXXXXXXXXXXXXXXXXXXXXXXXXXTNVSGAAGVVAREMDESFRVSDRARGALNDVIQNDAVGDVAKGVV---GALEGDTSTRKKRTQPTAEEKEEIPSSEQSNSAHFEVGG 344
            MA   +DFVLDEGLD+DED+L F S +         T+           P+   SPT                 T VIIDG+P +SSR DLD+F  +    I +++LRR+E   +LR R++F    AA +AL +DG  F  S +AV V  AS ERW      Q        T         +MLPD  AV +GFW+AF+AAR   ERLE+ A  L E LE +LH+SE V++T+ A+V +D++  VS+ VG++                          +V  AA  +A E+DE F +S++AR A N  +QND VG   + +V   GA     +    R      +K   PS  + N+   ++ G
Sbjct:    1 MAQEFSDFVLDEGLDDDEDILAFHSNRQRGGGGYAETAGT---------PQPNASPTXXXXXXXXXXXXXXXXXTTVIIDGMPPTSSRPDLDAFFSACGGKILSLQLRRIEASNILRARIKFDSEEAAASALQRDGQVFPRSDLAVSVKPASMERWNDGCGSQRGNGAPGATLTSPTNSIMQMLPDTNAVTSGFWSAFSAARXXXERLEEKATKLGEQLEEKLHLSEKVDETRDALVEVDRKLQVSEKVGKMAVAGKSAAQGIDETYGISKQVGKVAADVGSAARTMASEVDEDFHLSEKARVATNLALQNDTVGPAVRSIVDNFGATPTGEAAPSPRKDGVRRKKNYQPSGVEQNAVQTQLPG 355

The following BLAST results are available for this feature:

BLAST of Gcaud9563.t1 vs. uniprot

BLAST of Gcaud9563.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J5R9_9FLOR	1.710e-103	54.21	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QRC8_CHOCR	1.100e-45	34.62	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 48..164 e-value: 1.2E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..344
None	No IPR available	CDD	cd00590	RRM_SF	coord: 72..140 e-value: 1.74296E-4 score: 37.6697
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..147

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_388_length_27163_cov_4.403295	contig	NODE_388_length_27163_cov_4.403295:16005..17039 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9563.t1	Gcaud9563.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_388_length_27163_cov_4.403295 16005..17039 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9563.t1 ID=Gcaud9563.t1|Name=Gcaud9563.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MASSSADFVLDEGLDEDEDVLVFQSGQHYAAPESTTTSAQHATQDTIPEP
RQQTSPTDKEKSSPATGAPTAVIIDGLPISSSRADLDSFLDSAPITNVRL
RRLEKDGLLRVRVQFADSIAATAALNKDGADFRGSVIAVKVASDERWEAS
NAEQTARHRQQPPQKMLPDAKAVQTGFWNAFAAARNVAERLEKGARHLSE
DLERRLHVSETVEQTKTAIVNLDQQYGVSKTVGEVAKKGKEAAEGVDKTY
GISEGVNKVATNVSGAAGVVAREMDESFRVSDRARGALNDVIQNDAVGDV
AKGVVGALEGDTSTRKKRTQPTAEEKEEIPSSEQSNSAHFEVGG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf