Gcaud9528.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9528.t1
Unique NameGcaud9528.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length227
Homology
BLAST of Gcaud9528.t1 vs. uniprot
Match: A0A2V3J232_9FLOR (Ribosome assembly factor mrt4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J232_9FLOR)

HSP 1 Score: 383 bits (983), Expect = 1.900e-133
Identity = 185/220 (84.09%), Postives = 209/220 (95.00%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEEL 220
            MGRSKRERIV LTKTRKHVIGKK+KQDLLEAIR+DIDQ+EHIYVFST+NMRNAKLK+LR++WNDSRFFFGRKKIAQ+ALGRSPEEEY++GL ++SK+LVGNVGLLFTNR H++V+ FF  YCEDEFARSGFVATE V L +GPLEGFAPNQEQNLR+VELPVGLKKGVITLL+DFTVC+KGDVLTPERAK LEF+ +RMAKFRV+LLCHYRKSDA+FEEL
Sbjct:    1 MGRSKRERIVTLTKTRKHVIGKKRKQDLLEAIRNDIDQYEHIYVFSTENMRNAKLKQLRATWNDSRFFFGRKKIAQVALGRSPEEEYSEGLGKLSKRLVGNVGLLFTNRAHKDVISFFREYCEDEFARSGFVATEDVHLTKGPLEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCSKGDVLTPERAKALEFLHVRMAKFRVKLLCHYRKSDASFEEL 220          
BLAST of Gcaud9528.t1 vs. uniprot
Match: A0A7S1ETJ0_9RHOD (Ribosome assembly factor mrt4 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETJ0_9RHOD)

HSP 1 Score: 228 bits (581), Expect = 2.950e-72
Identity = 116/220 (52.73%), Postives = 155/220 (70.45%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEEL 220
            M RSKR+RIV+L+KT KHVIG++ K  L+E IR  +D+++ IYVFS  +MRNAKLKELR  W DSRFF GR K+ Q+ALG+    E+A+ L  V+K+L G+VGLLFTNR+H +V +FF SY   +FARSG  A E V L  G L  F  +Q   L+ + +PV L KGVI L+ DFTVC   ++LTPE+AK+LE +G + A+F++ LL H+ K+   FE L
Sbjct:    1 MPRSKRQRIVSLSKTGKHVIGREGKHGLIEEIRECVDKYDSIYVFSYQDMRNAKLKELRVEWRDSRFFLGRNKLLQVALGKDAATEHAENLNLVAKRLSGDVGLLFTNREHTQVKEFFESYSASDFARSGARAIETVTLNAGALTQFVASQNDQLQALGMPVQLSKGVIELMGDFTVCEMNEILTPEKAKILELLGYKHAQFKLNLLAHWSKNKG-FETL 219          
BLAST of Gcaud9528.t1 vs. uniprot
Match: Q4KTI9_SUBDO (Ribosome assembly factor mrt4 n=1 Tax=Suberites domuncula TaxID=55567 RepID=Q4KTI9_SUBDO)

HSP 1 Score: 227 bits (578), Expect = 9.260e-72
Identity = 109/220 (49.55%), Postives = 160/220 (72.73%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEEL 220
            M +SKR R++ L+KTR    G + K  LL+ IR  +D++ +++V+S DNMRNAKLK+LR+ W DSRFFFG+ ++ Q+ALGRS  +EY  GL  VS+QL G VGL FTN   E+V K+F ++ E+++ARSGF++TE++   +GPL  F  N E  LRK+ LP  LKKG +TL ED+TVC +GDVL+PE+A++L+ + I+MA F+V L+C +  +D +F ++
Sbjct:    1 MPKSKRNRVLTLSKTRSK--GHELKSGLLQEIRDSVDKYANLFVYSIDNMRNAKLKDLRTEWKDSRFFFGKNRVMQLALGRSESDEYKTGLHYVSEQLNGAVGLFFTNEPTEKVEKWFDNFSENDYARSGFISTEEIVCSEGPLTQFTHNMEPQLRKLGLPTALKKGEVTLREDYTVCTEGDVLSPEQARILKLLDIKMASFKVNLICVW-SNDGSFVQM 217          
BLAST of Gcaud9528.t1 vs. uniprot
Match: A0A8I6RK59_CIMLE (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RK59_CIMLE)

HSP 1 Score: 226 bits (575), Expect = 3.420e-71
Identity = 110/213 (51.64%), Postives = 153/213 (71.83%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKS 213
            M +SKR++ V+LTKT K   G + K  L+E IR  ++Q+++I+VFS +NMRN KLK LR  WNDSRFFFG+ K+  + LGR  E+E  D L ++S +L G  GLLFTNR +++V KFF +Y E ++ARSGFVATE V + +GPL  F  + E  LR++ LP  LKKGV+TLL D  VCN+GDVLTPE+A++L+ +  RMA+F++ L+C + K 
Sbjct:    1 MPKSKRDKKVSLTKTTKK--GLQAKHSLVEQIRKSVEQYKNIFVFSVENMRNGKLKNLRGDWNDSRFFFGKNKVMTLGLGRKKEDEVEDNLHKLSAKLKGQCGLLFTNRSNDDVTKFFDTYLEKDYARSGFVATETVVVPEGPLPEFPHSMEPQLRQLGLPTSLKKGVVTLLTDHKVCNEGDVLTPEQARILKLLDNRMAQFKISLICMWSKG 211          
BLAST of Gcaud9528.t1 vs. uniprot
Match: UPI0009A2C76E (mRNA turnover protein 4 homolog isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2C76E)

HSP 1 Score: 223 bits (569), Expect = 2.680e-70
Identity = 110/220 (50.00%), Postives = 156/220 (70.91%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEEL 220
            M RS+R++ V+LTKT K   G + KQ+L+E +R  +D +++++VFS +NMRN KLK++RS+W  SRFFFG+ K+  +ALG+ P +EY DGL +VSKQL G VGLLFTNR   EV+++F  Y E +FAR+G VAT  V L  GPL  F  + E  LR++ LP  LKKGV+TLL D+ VC +G  LTPE+A++L+ +G+ MA F+V + C +   +  FE+L
Sbjct:    1 MPRSRRDKRVSLTKTTKK--GLQVKQNLIEELRKCVDTYKNLFVFSVENMRNNKLKDMRSAWKHSRFFFGKNKVMMVALGKEPADEYKDGLHKVSKQLQGEVGLLFTNRTKVEVIEWFEQYTESDFARAGNVATMAVTLDAGPLPQFTHSLEPQLRQLGLPTSLKKGVVTLLSDYDVCKEGASLTPEQARLLKLLGVEMATFKVTINCMWNSENGEFEQL 218          
BLAST of Gcaud9528.t1 vs. uniprot
Match: K4GJE7_CALMI (Ribosome assembly factor mrt4 n=3 Tax=Callorhinchus milii TaxID=7868 RepID=K4GJE7_CALMI)

HSP 1 Score: 223 bits (568), Expect = 3.930e-70
Identity = 107/223 (47.98%), Postives = 157/223 (70.40%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEELQQM 223
            M RS+R++ V+LTKT K   G + KQ+L+E +R  +D ++H+++FS  NMRN KLK++R++W  SRFFFG+ K+  +ALG+ P +EY +GL +VSK+L G VGLLFT+R  EEV+++F  + E++FARSG  AT  V L  GPL  F  + E  LR++ LP  LKKGV+ LL D+ VC  GD+LTPE+A++L+ +G+ MA+F+V + C +      FE+L  M
Sbjct:    1 MPRSRRDKKVSLTKTAKK--GLEVKQNLIEELRKCVDTYKHLFIFSIKNMRNNKLKDIRNAWKHSRFFFGKNKVMALALGKGPADEYKEGLHKVSKELSGEVGLLFTSRTKEEVIEWFDQFSENDFARSGNQATMAVTLDAGPLSQFTHSMEPQLRQLGLPTSLKKGVVVLLSDYDVCKAGDILTPEQARLLKLLGLEMAEFKVTISCMWNSETGVFEKLAAM 221          
BLAST of Gcaud9528.t1 vs. uniprot
Match: A0A401PAH6_SCYTO (Ribosome assembly factor mrt4 n=5 Tax=Galeoidea TaxID=119195 RepID=A0A401PAH6_SCYTO)

HSP 1 Score: 222 bits (565), Expect = 1.160e-69
Identity = 110/220 (50.00%), Postives = 154/220 (70.00%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEEL 220
            M RS+R++ V+LTKT K   G + KQ+L+E +R  +D +++++VFS +NMRN KLK++RS+W  SRFFFG+ K+  +ALGR P +EY DGL +VSKQL G VGLLFTNR   EV+++F  Y E  FAR+G +AT  V L  GPL  F  + E  LR++ LP  LKKGV+TLL D+ VC +G  LTPE+A++L+ +G+ MA F+V + C +      FE+L
Sbjct:    1 MPRSRRDKRVSLTKTTKK--GLQIKQNLIEELRKCVDTYKNVFVFSIENMRNNKLKDMRSAWKHSRFFFGKNKVMMVALGREPADEYKDGLHKVSKQLQGEVGLLFTNRTKTEVIEWFDRYTESNFARAGNIATMAVTLDAGPLPQFTHSLEPQLRQLGLPTTLKKGVVTLLSDYDVCKEGASLTPEQARLLKLLGVEMADFKVTINCMWNSETGEFEQL 218          
BLAST of Gcaud9528.t1 vs. uniprot
Match: R7QI94_CHOCR (Ribosome assembly factor mrt4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI94_CHOCR)

HSP 1 Score: 219 bits (559), Expect = 1.340e-69
Identity = 106/174 (60.92%), Postives = 131/174 (75.29%), Query Frame = 0
Query:   50 MRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEELQQM 223
            MRN  LK+LR+ W DSRFF GR KI Q+ALGR   EEYADGLRQV+ QL GNVGLLFTNR H+EV+ FF  +  D++ARSGF ATEKV+L +G LE F  +QE +LR + +P+ LKKG + L  DFTVC  G+ LTPE+AK+LEF+G+RMAKFRV L C+YRK D  F+ L  +
Sbjct:    1 MRNTILKKLRTEWRDSRFFMGRNKIMQVALGRDEAEEYADGLRQVATQLTGNVGLLFTNRKHKEVVSFFRKFEADDYARSGFEATEKVELAKGELEMFETSQEHSLRLLGMPIVLKKGKVCLSRDFTVCEGGETLTPEKAKILEFLGVRMAKFRVVLRCYYRKKDGHFKLLDDV 174          
BLAST of Gcaud9528.t1 vs. uniprot
Match: W5MAE0_LEPOC (Ribosome assembly factor mrt4 n=4 Tax=Lepisosteidae TaxID=7915 RepID=W5MAE0_LEPOC)

HSP 1 Score: 221 bits (563), Expect = 3.090e-69
Identity = 107/218 (49.08%), Postives = 155/218 (71.10%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFE 218
            M +SKR++ ++LTKT K   G + KQ+L+E +R  +D + H+++FS  NMRN+KLK++R++W  SRFFFG+ K+  IALG+ P +EY D L +VSK L G VGLLFTN+  EEV ++F  + E +FAR+G  AT  V L +GPL+ F+ + E  LR++ LP  LKKGV+TLL+D+ VC +GD LTPE+A VL+ +GI++A+FRV + C +      FE
Sbjct:    3 MPKSKRDKKISLTKTTKK--GLESKQNLIEELRKCVDMYSHLFIFSVANMRNSKLKDIRTAWKHSRFFFGKNKVMMIALGKGPADEYKDNLHKVSKFLRGEVGLLFTNKTKEEVQEYFSHFKEIDFARAGNKATMAVTLDEGPLDQFSHSMEPQLRQLGLPTALKKGVVTLLKDYDVCKEGDTLTPEQATVLKLLGIKLAEFRVTIKCMWNSETGDFE 218          
BLAST of Gcaud9528.t1 vs. uniprot
Match: A0A3Q2YE24_HIPCM (Ribosome assembly factor mrt4 n=2 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2YE24_HIPCM)

HSP 1 Score: 219 bits (558), Expect = 1.330e-68
Identity = 109/221 (49.32%), Postives = 155/221 (70.14%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNMRNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPNQEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMAKFRVRLLCHYRKSDAAFEELQ 221
            M +SKR++ ++LTKT K   G + KQ L+E +R  +D ++++++FS  NMRN KLK++R++W  SRFFFG+ K+  IA+G+   +EY D L QVSK L G VG+LFTN+  EEV ++F  Y E ++ARSG  A   V L +GPLE F  + E  LR++ LP  LKKGV+TLL+D+TVC  GDVLTPE+A++L+ +GI MA+FRV + C +     AFE L+
Sbjct:    1 MPKSKRDKKISLTKTAKK--GLESKQKLIEELRKCVDTYKYLFIFSVANMRNNKLKDIRTAWKHSRFFFGKNKVMIIAIGKGETDEYRDNLCQVSKHLRGEVGVLFTNKTKEEVQEYFSHYRETDYARSGNRAQMDVTLDEGPLEQFTHSMEPQLRQLGLPTTLKKGVVTLLKDYTVCKAGDVLTPEQARILKLLGIEMAEFRVTIKCMWSSETGAFEILE 219          
The following BLAST results are available for this feature:
BLAST of Gcaud9528.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J232_9FLOR1.900e-13384.09Ribosome assembly factor mrt4 n=1 Tax=Gracilariops... [more]
A0A7S1ETJ0_9RHOD2.950e-7252.73Ribosome assembly factor mrt4 n=1 Tax=Timspurckia ... [more]
Q4KTI9_SUBDO9.260e-7249.55Ribosome assembly factor mrt4 n=1 Tax=Suberites do... [more]
A0A8I6RK59_CIMLE3.420e-7151.64Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]
UPI0009A2C76E2.680e-7050.00mRNA turnover protein 4 homolog isoform X1 n=2 Tax... [more]
K4GJE7_CALMI3.930e-7047.98Ribosome assembly factor mrt4 n=3 Tax=Callorhinchu... [more]
A0A401PAH6_SCYTO1.160e-6950.00Ribosome assembly factor mrt4 n=5 Tax=Galeoidea Ta... [more]
R7QI94_CHOCR1.340e-6960.92Ribosome assembly factor mrt4 n=1 Tax=Chondrus cri... [more]
W5MAE0_LEPOC3.090e-6949.08Ribosome assembly factor mrt4 n=4 Tax=Lepisosteida... [more]
A0A3Q2YE24_HIPCM1.330e-6849.32Ribosome assembly factor mrt4 n=2 Tax=Syngnathidae... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR04316450S ribosomal protein L10, insertion domain superfamilyGENE3D3.90.105.20coord: 126..199
e-value: 1.4E-69
score: 235.4
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 22..121
e-value: 8.1E-19
score: 67.6
IPR043141Ribosomal protein L10-like domain superfamilyGENE3D3.30.70.1730coord: 32..213
e-value: 1.4E-69
score: 235.4
IPR043141Ribosomal protein L10-like domain superfamilySUPERFAMILY160369Ribosomal protein L10-likecoord: 22..143
IPR04063760S ribosomal protein L10P, insertion domainPFAMPF17777RL10P_insertcoord: 127..197
e-value: 4.8E-18
score: 65.0
NoneNo IPR availablePANTHERPTHR45841MRNA TURNOVER PROTEIN 4 MRTO4coord: 1..222
IPR033867Ribosome assembly factor Mrt4CDDcd05796Ribosomal_P0_likecoord: 23..185
e-value: 1.30924E-79
score: 234.009

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_886_length_16552_cov_4.439098contigNODE_886_length_16552_cov_4.439098:15625..16305 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9528.t1Gcaud9528.t1Gracilaria caudata M_176_S67 malemRNANODE_886_length_16552_cov_4.439098 15625..16305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9528.t1 ID=Gcaud9528.t1|Name=Gcaud9528.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRHDIDQFEHIYVFSTDNM
RNAKLKELRSSWNDSRFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVG
NVGLLFTNRDHEEVLKFFGSYCEDEFARSGFVATEKVQLKQGPLEGFAPN
QEQNLRKVELPVGLKKGVITLLEDFTVCNKGDVLTPERAKVLEFVGIRMA
KFRVRLLCHYRKSDAAFEELQQMRAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043164RL10_insert_sf
IPR001790Ribosomal_L10P
IPR043141Ribosomal_L10-like_sf
IPR040637RL10P_insert
IPR033867Mrt4