Gcaud9520.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9520.t1
Unique Name	Gcaud9520.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	159

Homology

[Close]

BLAST of Gcaud9520.t1 vs. uniprot
Match: A0A2V3IZ45_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ45_9FLOR)

HSP 1 Score: 101 bits (251), Expect = 2.720e-24
Identity = 66/157 (42.04%), Postives = 87/157 (55.41%), Query Frame = 0

Query:   13 SLQGGLSIEAVTFEVDDKPRSNRLMCVVTPAEPERAYLGDGNK-----------SGSSSEKQSDDTSEVDAKSTGDIKVVVVDVESNESKKASPWASFALGALVGVLPPVLLVRVFAKSWVDKWFPTVDGRWFRYGRSLGLLLLVLFCILVAVLRIH 158
            SLQ   ++E+V+FEVDD+PR++       P +P   Y    ++           S S S   SDD    + K T  I +          KK      FA+G LVGV PP++LVR+ AK WVD   P +D R+FRYGRS+GL LLV+FCILVAVLR+ 
Sbjct:    6 SLQLMHALESVSFEVDDRPRTSGSQ---PPRKPPPVYKPSADEDVATRSSSDPASASGSAHVSDDAKLREVK-TDRIPIQRKGGSDERGKKREALMCFAMGVLVGVFPPIILVRLCAKQWVDSHLPPLDSRFFRYGRSMGLFLLVIFCILVAVLRLR 158

The following BLAST results are available for this feature:

BLAST of Gcaud9520.t1 vs. uniprot

BLAST of Gcaud9520.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IZ45_9FLOR	2.720e-24	42.04	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..72
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 96..118
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 158..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 119..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..95
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 139..157
None	No IPR available	TMHMM	TMhelix		coord: 133..155
None	No IPR available	TMHMM	TMhelix		coord: 96..118

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:51815..52291 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9520.t1	Gcaud9520.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_69_length_56878_cov_4.412084 51815..52291 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9520.t1 ID=Gcaud9520.t1|Name=Gcaud9520.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=159bp
MAEYEAGSPSAISLQGGLSIEAVTFEVDDKPRSNRLMCVVTPAEPERAYL
GDGNKSGSSSEKQSDDTSEVDAKSTGDIKVVVVDVESNESKKASPWASFA
LGALVGVLPPVLLVRVFAKSWVDKWFPTVDGRWFRYGRSLGLLLLVLFCI
LVAVLRIH*