Gcaud9516.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9516.t1
Unique NameGcaud9516.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length388
Homology
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A2V3IXI7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXI7_9FLOR)

HSP 1 Score: 321 bits (823), Expect = 7.420e-104
Identity = 188/409 (45.97%), Postives = 256/409 (62.59%), Query Frame = 0
Query:    3 AFSAPVPVVLSRTQKAACERSRSLLPARCS--PALSLSTPEPHTSARRPVRDKRRSRKGINAPQNSRRVPTYKKLQSRERREPNLEHESEQNESKKWK---------KRKIKVN--------------YSDIFVGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRLWGRAANGRQLTETNEVSIVSLQPETYELRNREVPRPTRRSWEPENIADDEDETKEEVQEXXXXXXXXXXXXXXFDDEEFSFAEEPFALFEEK--GGSGRNRIRGLEEVAHMFTEDTQFVSE 384
            AFSAP+ +  +  Q    + S     +RC+  P  +LS  +P T +++ VR++R      NAP+  +RVPTY+K+Q+R R+ P   H  EQ + K  +         + +I+ N              +SDI +G++L GVVRN VPHGAYV+V AE+DGL+H+RDM+VDFVH P+D VR GD VTVWVK+V+ +K++LGLTMVKPHLGFESRIK+ +I  GGRYQGVIER+TNYGAYVDIGAERQAFLHV ALWG   RETLD+LRLG+K+WVHV E+D  ++HIRLW R  +   LT T E+  + +  E   + +  VP PT R+W+     D +    EE  E              ++++EFSFAE+     +E   G    ++   L EVAHMF E T+F+ +
Sbjct:    6 AFSAPLSLFPNAAQTTPFDSS-----SRCTHRPQTALSVSQPSTPSKKSVRNRRTDESRKNAPR-GKRVPTYRKMQNRHRQGPAF-HRREQQDRKLSEIADGAQSETQSQIQENPNKTDEQPPLPKRPFSDIRLGERLFGVVRNTVPHGAYVDVGAEKDGLVHVRDMAVDFVHTPTDIVRSGDTVTVWVKFVNASKRVLGLTMVKPHLGFESRIKMKDIVEGGRYQGVIERITNYGAYVDIGAERQAFLHVAALWGALPRETLDFLRLGQKIWVHVAEVDTQRNHIRLWARGKDDLPLTYTTEILTIPVHSEQ-RVEDAPVPTPTLRAWDVNKTGDSDVNQVEEGSEEDDSVQHE------YEEDEFSFAEDDSEWLDESITGKRKPHQTDNLREVAHMFDEATEFIDD 400          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A1X6P2E1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2E1_PORUM)

HSP 1 Score: 149 bits (377), Expect = 5.870e-38
Identity = 72/168 (42.86%), Postives = 107/168 (63.69%), Query Frame = 0
Query:  109 IFVGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFES--------RIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRLWGR 268
            +  G++L G V N+V HGAYV+V A  DGL+HLRDMSV+FVH P D +  GD V V+VKY +     L L++++P     +        R ++ ++ +G R  G + RV+N+GAYVD+GA    F+HV+ L+G   R TL+ LRLG+++WV V  +D+ +S I+L  R
Sbjct:  120 LVAGQRLDGTVTNLVKHGAYVDVGATTDGLVHLRDMSVEFVHEPEDILAPGDTVEVYVKYAEEVTGRLALSLLRPRPSVATPLPQAARGRTRLVDVAVGSRVLGTVRRVSNFGAYVDVGAAMDGFVHVSLLYGRRPRRTLEELRLGQELWVVVDAVDVARSAIKLRAR 287          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A5J4YU14_PORPP (30S ribosomal protein S1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU14_PORPP)

HSP 1 Score: 130 bits (328), Expect = 1.760e-31
Identity = 64/160 (40.00%), Postives = 100/160 (62.50%), Query Frame = 0
Query:  111 VGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRLWGRAA 270
            +G+K++G V  +VP GA+V++ A + GL+H+RDMS +FV  P D V     V V++KY+D  ++ L L+++ P         +    LG   +G ++RVTNYG ++D+GA   AFLHV+ +WG   RET++ +R GE V   V  +D TKS +R+  RA+
Sbjct:  101 MGQKVTGKVFRLVPFGAFVDIGATKAGLLHVRDMSTEFVDRPEDVVSNKQVVEVYIKYLDVEQQKLALSLL-PRTATSRDKNLANFALGEEVKGTVQRVTNYGVFLDVGASCDAFLHVSDIWGRRPRETMESMRFGETVRAWVSHIDETKSFLRVSARAS 259          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A7S0MIS4_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MIS4_9CRYP)

HSP 1 Score: 124 bits (311), Expect = 2.360e-29
Identity = 68/169 (40.24%), Postives = 103/169 (60.95%), Query Frame = 0
Query:   99 KRKIKVNYSDIFVGK-KLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTAL---WGDSQRETLDYLRLGEKVWVHVVELDITKSHI 263
            KRKI     D+  G+  + G+VRN+   GA+V+V AERDG +H+ D+S +F+H PSDF+R G  +  WVKYVD A+  LGLTM+ P    E+ ++  EI +G      I R+T++G +VDI A+   F+H T L      + R +LD L +G+ + V V E+D+ +  +
Sbjct:   75 KRKIMNPLKDLQYGQGPIKGIVRNVESFGAFVDVGAERDGFVHVSDISTEFIHQPSDFLRSGKQIDCWVKYVDEAQGKLGLTMI-PRKHGETPLE--EIAVGSELGAKILRITSFGIFVDINAQADGFMHSTKLPRRRNSASRVSLDELSIGQTLGVRVTEVDLVRRRV 240          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A0M8KAN0_9CHLR (Small subunit ribosomal protein S1 n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAN0_9CHLR)

HSP 1 Score: 120 bits (300), Expect = 1.780e-27
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 0
Query:  100 RKIKVNYSDIFVGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFES-------RIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRL 265
            R+I V+  ++  G +L G+VR+   +GA+V++ AE DGL+H+ ++   FV    D V EGD VTVWVK +D  +K + LTM+ P+   ES       ++++ ++E G  + G++  + ++GA+VDIGAE    +H++ L  +      D + +G++V V ++ +D  +  I L
Sbjct:   70 REITVHMDELTPGMELKGIVRSTQDYGAFVDIGAETDGLVHISELKDGFVEKVEDVVSEGDEVTVWVKEIDLERKRISLTMIDPNAPRESQREADDGKLRLRDLEEGQEFTGIVTSIVDFGAFVDIGAETDGLVHISELSEERVNRVEDVVEVGQEVKVRIIGIDRKRKRISL 242          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A7C7VSR6_9CHLR (S1 RNA-binding domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7VSR6_9CHLR)

HSP 1 Score: 117 bits (293), Expect = 3.950e-27
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 0
Query:  107 SDIFVGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRL 265
            SD+    KL G +R +  +GA+V++  ERDGLIH+  +S   V   SD V+EGD VTVWV  VDP +  +GLTMV+P      +++  E++ G  Y G I R+  YG +VDIGA R   LHV  + G   R   +  R G++V V ++ LD  K  I L
Sbjct:   23 SDLRPKMKLEGTIRRVELYGAFVDIGLERDGLIHISQLSNRRVDRVSDVVKEGDRVTVWVARVDPEQGRIGLTMVEP-----PKVEWRELKEGQSYTGRIVRMERYGVFVDIGAGRPGLLHVREMGGRVFRHPSELFREGDEVEVRILSLDRRKKRIDL 176          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A1F8RFG0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_16_63_12 TaxID=1797657 RepID=A0A1F8RFG0_9CHLR)

HSP 1 Score: 108 bits (270), Expect = 7.320e-24
Identity = 62/176 (35.23%), Postives = 101/176 (57.39%), Query Frame = 0
Query:  114 KLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRLWGRAAN--GRQLTETNEVSIVSLQ 287
            KL+G V+ +   GA+V+V   RDGL+H+  +  + V+  +D V+EGDAVTVWV+ VDP    + LTM++P       +K  ++     Y G + +V  +GA+VDIGAER   +H++ L      +  + ++LG+ V V V+ +D  K  I+L  +A    G +  E  E S+ ++Q
Sbjct:   25 KLTGTVKKVELFGAFVDVGVGRDGLLHISALGPNPVNNVTDVVKEGDAVTVWVRKVDPQAGRIDLTMIEPLAVDWQELKPHQV-----YTGKVVKVERFGAFVDIGAERPGMVHISELASYRVEDVSEIVKLGDTVQVKVLAVDSRKKQIKLSIKAIEEAGPEEIEAPEESLTAMQ 195          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.200e-23
Identity = 69/189 (36.51%), Postives = 109/189 (57.67%), Query Frame = 0
Query:   98 KKRKIKVNYSDIFVGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDM-SVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTM--------------VKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRE------TLDYLRLGEKVWVHVVELDITKSHIRL 265
            KKR +    S++  G +L+G VRN+   GA+V+V AE+DGL+H++DM S  +V    +  + GD V+V VK+VD  K++LGLTM              V   L    R  +  +E   +  GV+ERVT++GA+VDIGAE QAFLH+     D  R       T  + R G+++ ++V E+++ K+ +++
Sbjct:  132 KKRVVSKPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKELDDQGMPMIPEEVASALANLDRQSLKNLEEDDQVWGVVERVTSFGAFVDIGAEVQAFLHIL----DYPRRVKAASATKSFHR-GQRLRLYVKEVELDKNRVKV 315          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A524PD43_9CHLR (S1 RNA-binding domain-containing protein (Fragment) n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524PD43_9CHLR)

HSP 1 Score: 106 bits (264), Expect = 3.420e-23
Identity = 53/149 (35.57%), Postives = 90/149 (60.40%), Query Frame = 0
Query:  117 GVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRL 265
            GVV  I   GA+V++  E  GLIH+  +    V+   D ++EGD V VW++ +D + K + LT++KP       ++   +++G   QG + R+ N+GA+VDIGAER   +HV+ +  +  ++  D +++G++V V +VE+D  K  IRL
Sbjct:    2 GVVTKIEIFGAFVDIGTEVPGLIHISQLKRGHVNRVGDEIKEGDEVEVWIQKIDQSAKRIELTLIKP-----VSLQWQNLKVGTTLQGEVVRIENFGAFVDIGAERSGLVHVSEMGEEYVKDPRDLVKIGDEVNVTIVEIDRKKKQIRL 145          
BLAST of Gcaud9516.t1 vs. uniprot
Match: A0A2N2PSQ9_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2N2PSQ9_9CHLR)

HSP 1 Score: 106 bits (265), Expect = 1.220e-22
Identity = 52/155 (33.55%), Postives = 90/155 (58.06%), Query Frame = 0
Query:  111 VGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVHFPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGGRYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVWVHVVELDITKSHIRL 265
            VG+++ G+V+ +   GA++++   RDGL+H+ +M+V  V  PSD V++GD V VW+K ++  K  + L+M++P       + V E+E G    G + R+  YGA+VDIG  R   LHV  +      +  D + +G+++ V +V LD  +  + L
Sbjct:   59 VGQQVEGLVKQVTDFGAFIDIGVGRDGLVHVSEMAVGRVTKPSDIVKQGDKVPVWIKELNREKNRISLSMIEP-----GSLTVRELEEGMVVTGKVTRLERYGAFVDIGVGRDGMLHVKEMGHGYVEKPEDVVNMGDEIQVQIVGLDRRRGRVDL 208          
The following BLAST results are available for this feature:
BLAST of Gcaud9516.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXI7_9FLOR7.420e-10445.97Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P2E1_PORUM5.870e-3842.86Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YU14_PORPP1.760e-3140.0030S ribosomal protein S1 n=1 Tax=Porphyridium purp... [more]
A0A7S0MIS4_9CRYP2.360e-2940.24Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A0M8KAN0_9CHLR1.780e-2733.53Small subunit ribosomal protein S1 n=2 Tax=Ardenti... [more]
A0A7C7VSR6_9CHLR3.950e-2741.51S1 RNA-binding domain-containing protein n=1 Tax=A... [more]
A0A1F8RFG0_9CHLR7.320e-2435.23Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7S2V5P7_9STRA2.200e-2336.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A524PD43_9CHLR3.420e-2335.57S1 RNA-binding domain-containing protein (Fragment... [more]
A0A2N2PSQ9_9CHLR1.220e-2233.55Uncharacterized protein n=2 Tax=Chloroflexi TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 312..332
NoneNo IPR availableGENE3D2.40.50.140coord: 93..183
e-value: 8.7E-16
score: 59.6
coord: 188..271
e-value: 1.0E-11
score: 46.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..93
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 79..183
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 191..307
NoneNo IPR availablePANTHERPTHR10724:SF10S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1coord: 191..307
coord: 79..183
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 197..268
e-value: 2.3E-5
score: 33.8
coord: 110..181
e-value: 4.5E-12
score: 56.1
IPR003029S1 domainPFAMPF00575S1coord: 197..265
e-value: 1.1E-7
score: 32.1
coord: 110..174
e-value: 5.3E-9
score: 36.3
IPR003029S1 domainPROSITEPS50126S1coord: 112..181
score: 15.318932
IPR003029S1 domainPROSITEPS50126S1coord: 199..268
score: 14.126505
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 194..265
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 98..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_69_length_56878_cov_4.412084contigNODE_69_length_56878_cov_4.412084:41508..42671 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9516.t1Gcaud9516.t1Gracilaria caudata M_176_S67 malemRNANODE_69_length_56878_cov_4.412084 41508..42671 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9516.t1 ID=Gcaud9516.t1|Name=Gcaud9516.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=388bp
MQAFSAPVPVVLSRTQKAACERSRSLLPARCSPALSLSTPEPHTSARRPV
RDKRRSRKGINAPQNSRRVPTYKKLQSRERREPNLEHESEQNESKKWKKR
KIKVNYSDIFVGKKLSGVVRNIVPHGAYVNVDAERDGLIHLRDMSVDFVH
FPSDFVREGDAVTVWVKYVDPAKKILGLTMVKPHLGFESRIKVTEIELGG
RYQGVIERVTNYGAYVDIGAERQAFLHVTALWGDSQRETLDYLRLGEKVW
VHVVELDITKSHIRLWGRAANGRQLTETNEVSIVSLQPETYELRNREVPR
PTRRSWEPENIADDEDETKEEVQEENVVEEEEVEAEDIFDDEEFSFAEEP
FALFEEKGGSGRNRIRGLEEVAHMFTEDTQFVSEEES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR003029S1_domain
IPR012340NA-bd_OB-fold