Gcaud9465.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9465.t1
Unique NameGcaud9465.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length31
Homology
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BLAST of Gcaud9465.t1 vs. uniprot
Match: R7QR20_CHOCR (Uncharacterized protein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QR20_CHOCR)

HSP 1 Score: 58.9 bits (141), Expect = 1.440e-10
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0 
Query:    1 MPALETDLLNPDRAVEANKHKLKRLVQSPNS 31
            MPALETDLLNPD AVE  KHKLKRLVQSPNS
Sbjct:    1 MPALETDLLNPDHAVEMKKHKLKRLVQSPNS 31
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BLAST of Gcaud9465.t1 vs. uniprot
Match: A0A1X6P2N4_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2N4_PORUM)

HSP 1 Score: 55.8 bits (133), Expect = 2.370e-9
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 
Query:    1 MPALETDLLNPDRAVEANKHKLKRLVQSPNS 31
            MPALE DLL+PD AVEA KHKLKRLVQSPNS
Sbjct:    1 MPALECDLLHPDPAVEAKKHKLKRLVQSPNS 31
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BLAST of Gcaud9465.t1 vs. uniprot
Match: M2VUX8_GALSU (40S ribosomal protein S27 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VUX8_GALSU)

HSP 1 Score: 48.9 bits (115), Expect = 1.280e-6
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0 
Query:    1 MPALETDLLNPDRAVEANKHKLKRLVQSPNS 31
            MP L+ DLL+PD AVEA KHKL+RL+ SPNS
Sbjct:    1 MPVLQGDLLHPDPAVEARKHKLRRLIPSPNS 31
The following BLAST results are available for this feature:
BLAST of Gcaud9465.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QR20_CHOCR1.440e-1090.32Uncharacterized protein n=2 Tax=Rhodymeniophycidae... [more]
A0A1X6P2N4_PORUM2.370e-987.10Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
M2VUX8_GALSU1.280e-670.9740S ribosomal protein S27 n=1 Tax=Galdieria sulphu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023407Ribosomal protein S27, zinc-binding domain superfamilyGENE3D2.20.25.100coord: 1..31
e-value: 3.2E-8
score: 35.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3036_length_4165_cov_2.529701contigNODE_3036_length_4165_cov_2.529701:1179..1387 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9465.t1Gcaud9465.t1Gracilaria caudata M_176_S67 malemRNANODE_3036_length_4165_cov_2.529701 1179..1387 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9465.t1 ID=Gcaud9465.t1|Name=Gcaud9465.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=31bp
MPALETDLLNPDRAVEANKHKLKRLVQSPNS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023407Ribosomal_S27_Zn-bd_dom_sf