Gcaud9449.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9449.t1
Unique NameGcaud9449.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length202
Homology
BLAST of Gcaud9449.t1 vs. uniprot
Match: A0A2V3IHV3_9FLOR (Ras-related protein RABC1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHV3_9FLOR)

HSP 1 Score: 359 bits (921), Expect = 9.260e-125
Identity = 179/201 (89.05%), Postives = 194/201 (96.52%), Query Frame = 0
Query:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAATNIRPSADNTTSSYAESCSC 201
            MEFDETFKIL+VGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLT+AYYRGAHGVILVYDVSKRETF++LKE+WLKEVAMYSTRP+AVKM+VGNK+DIE+RQVSREEG+EFARQQSTLFVESSAKTATGVQQTFEELLRKILETP+LC S+S+   NIRP+A N +SSYAE CSC
Sbjct:    1 MEFDETFKILVVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTNAYYRGAHGVILVYDVSKRETFDSLKEIWLKEVAMYSTRPSAVKMIVGNKIDIEKRQVSREEGVEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPELCVSESSQGGNIRPTAGNASSSYAEGCSC 201          
BLAST of Gcaud9449.t1 vs. uniprot
Match: R7QD81_CHOCR (Rab family GTPase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD81_CHOCR)

HSP 1 Score: 352 bits (902), Expect = 7.030e-122
Identity = 185/201 (92.04%), Postives = 189/201 (94.03%), Query Frame = 0
Query:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAATNIRPSADNTTSSYAESCSC 201
            MEFDETFKILLVGDSGVGKSSILLRFTDDVFE MQPTIGVDFKVKA KVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALK+VWLKEV+MYSTR AAVKMVVGNKVDIE RQVSREEGL FARQQSTLFVESSAKTA+GVQQTFEELLRKILETPQLC SDSAA  NI+PSA    SSYAESCSC
Sbjct:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEAMQPTIGVDFKVKAMKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKDVWLKEVSMYSTRSAAVKMVVGNKVDIEDRQVSREEGLAFARQQSTLFVESSAKTASGVQQTFEELLRKILETPQLCTSDSAAG-NIQPSASGQGSSYAESCSC 200          
BLAST of Gcaud9449.t1 vs. uniprot
Match: A0A1X6P3G8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3G8_PORUM)

HSP 1 Score: 262 bits (670), Expect = 1.910e-86
Identity = 128/178 (71.91%), Postives = 150/178 (84.27%), Query Frame = 0
Query:    3 FDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAA 180
            +DE FK+LL GDSGVGKSSILLRFTDDVF+ + PTIGVDFKVKA +VD RRVK+T WDTAGQERFRTLTSAYYRGAHGV+LVYDVSKRETF+ L  VWL EV  YSTRP  +KM+VGNK+D+  R+VS  +G   AR+   LF+ESSA+TA GV+Q FEEL+RK+L+TPQLCAS SA+
Sbjct:    4 YDEQFKVLLCGDSGVGKSSILLRFTDDVFDDVAPTIGVDFKVKALEVDGRRVKITAWDTAGQERFRTLTSAYYRGAHGVVLVYDVSKRETFDNLASVWLPEVNQYSTRPEVIKMIVGNKLDLANREVSSADGDALARRNGCLFIESSARTAAGVRQCFEELVRKVLDTPQLCASSSAS 181          
BLAST of Gcaud9449.t1 vs. uniprot
Match: D8RPN0_SELML (Rab family GTPase n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPN0_SELML)

HSP 1 Score: 239 bits (611), Expect = 2.320e-77
Identity = 125/202 (61.88%), Postives = 154/202 (76.24%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAATNI-RPSADNTTSSYAESCSC 201
            EFD  FKILL+GDSGVGKSS+LLRFT D F+ + PTIGVDFK+K   ++ +R+K+TIWDTAGQERFRTLTS+YYRGA GVILVYDV++R+TF  L++VWLKEV +YST    VK++VGNKVD + +R VS+ EG+ FAR+   LF+ESSAKT   VQQ FEEL+RKILETP L A   +   NI RP  +      A SC+C
Sbjct:   14 EFDHLFKILLIGDSGVGKSSLLLRFTADTFDDLSPTIGVDFKLKLMTLEGKRLKLTIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLQDVWLKEVELYSTNQDCVKLLVGNKVDRDSERAVSQHEGIAFARKYGCLFLESSAKTRINVQQCFEELVRKILETPSLVAEAKSVKKNILRPGNEPPPPENAGSCAC 215          
BLAST of Gcaud9449.t1 vs. uniprot
Match: A0A388JM55_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JM55_CHABU)

HSP 1 Score: 239 bits (610), Expect = 2.450e-77
Identity = 121/202 (59.90%), Postives = 155/202 (76.73%), Query Frame = 0
Query:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQ-RQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAATNIRPSADNTTSSYAESCSC 201
            +EFD  FK+LL+GDSGVGKSS+LLRFT + F+ + PTIGVDFK+K   ++ +R+K+TIWDTAGQERFRTLTS+YYRGA G+IL YDV++R+TF  L +VWLKEV  YST P  VKM+VGNK+D E+ R V++++ + FARQ   LF+E SAK++ GVQQ FEEL+RKILETP L   D+A A  +RP AD +    A  C C
Sbjct:    7 VEFDHLFKLLLIGDSGVGKSSLLLRFTTNTFDDLSPTIGVDFKLKMLNLNGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILTYDVTRRDTFTNLADVWLKEVERYSTNPDCVKMLVGNKIDKEEERVVTKQDAIAFARQYGCLFIECSAKSSVGVQQCFEELVRKILETPSLVL-DTAPAGTVRPGADQSVD-VASGCRC 206          
BLAST of Gcaud9449.t1 vs. uniprot
Match: A0A5B8N2B8_9CHLO (Small rab-related GTPase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N2B8_9CHLO)

HSP 1 Score: 238 bits (608), Expect = 5.820e-77
Identity = 118/183 (64.48%), Postives = 146/183 (79.78%), Query Frame = 0
Query:    3 FDETFKILLVGDSGVGKSSILLRFT-DDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAATNI 184
            FD  FKILLVGDSGVGKSSIL+RFT +D FE M PTIGVDFK+K   +D +R+K+TIWDTAGQERFRTLTS+YYRGA G+I  YDV ++ETF +L+E+W+ EV MYST P A+KMVVGNKVD++ RQV++EEG  FARQ   LF+E+SAK    + Q FEEL+RK+LETPQL    ++A+  I
Sbjct:   14 FDHLFKILLVGDSGVGKSSILMRFTTEDCFEDMSPTIGVDFKLKMLDLDGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIFAYDVCRKETFRSLQELWMNEVDMYSTIPDAIKMVVGNKVDLQDRQVTKEEGKNFARQHGCLFIETSAKENIKIAQCFEELVRKMLETPQLVEDYNSASKGI 196          
BLAST of Gcaud9449.t1 vs. uniprot
Match: A0A1Y1II07_KLENI (Rab family GTPase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II07_KLENI)

HSP 1 Score: 238 bits (606), Expect = 1.630e-76
Identity = 120/201 (59.70%), Postives = 153/201 (76.12%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAATNIRPSADNTTSSYAESCSC 201
            EFD  FK+LL+GDSGVGKSS+LLRFT D F+ + PTIGVDFK+K   +  +R+K+TIWDTAGQERFRTLTS+YYRGA G+IL YDV++RETF  L ++WLKEV +YST P  +KM+VGNKVD E +RQV++EEG  FARQ   LF+E+SAKT  GVQ  F+EL++KIL+TP L      +  ++R +AD   SS    C+C
Sbjct:   23 EFDHLFKLLLIGDSGVGKSSLLLRFTADTFDDLSPTIGVDFKLKMLTLGGKRIKLTIWDTAGQERFRTLTSSYYRGAQGIILAYDVTRRETFTDLSDIWLKEVELYSTNPDCIKMLVGNKVDRESERQVTKEEGKAFARQHGCLFLEASAKTRRGVQDCFQELVQKILDTPGLVDVGRPSGDHLRLNADQQASS--SGCAC 221          
BLAST of Gcaud9449.t1 vs. uniprot
Match: A9RLA5_PHYPA (Rab18/RabC-family small GTPase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9RLA5_PHYPA)

HSP 1 Score: 233 bits (593), Expect = 1.110e-74
Identity = 112/185 (60.54%), Postives = 146/185 (78.92%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQ--RQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAATNI 184
            EFD  FKILL+GDSGVGKSS+L+RFT D F+ + PTIGVDFKVK   +  +++K+TIWDTAGQERFRTLTS+YYRGA G+ILVYDVS+R TF  L ++WLKEV  YST P  +KM++GNKVD+E+  R V+++EG+ FARQ   LF+E+SAKT+  VQ+ F+EL++KIL+TP L A  +    N+
Sbjct:    7 EFDHLFKILLIGDSGVGKSSLLVRFTADTFDDLSPTIGVDFKVKMMTLGGKKLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVSRRATFTNLSDIWLKEVDRYSTNPDCIKMLIGNKVDLEEHERVVTKKEGIAFARQHGCLFLEASAKTSVNVQRCFDELVQKILDTPSLTADTAQLKKNV 191          
BLAST of Gcaud9449.t1 vs. uniprot
Match: A0A804HYL4_MUSAM (Uncharacterized protein n=4 Tax=Petrosaviidae TaxID=1437197 RepID=A0A804HYL4_MUSAM)

HSP 1 Score: 232 bits (592), Expect = 1.520e-74
Identity = 120/199 (60.30%), Postives = 151/199 (75.88%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSAAAT-NI----RPSADNTTSS 194
            EFD  FK+LL+GDSGVGKSS+LLRFT D FE + PTIGVDFKVK   +  +R+K+ IWDTAGQERFRTLTS+YYRGA GVI+VYDV++R+TF  L ++W KE+ +YST    +KM+VGNKVD E +R V+++EG++FAR+   LF+E SAKT   V+Q FEEL+ KILETP LCA  S+    NI     P AD +TSS
Sbjct:   10 EFDYLFKLLLIGDSGVGKSSLLLRFTSDSFEDLSPTIGVDFKVKIVNIGGKRLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRDTFTNLSDIWAKEIELYSTNQDCIKMLVGNKVDKEGERAVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLCAEGSSGLKKNIFKQKPPQADASTSS 208          
BLAST of Gcaud9449.t1 vs. uniprot
Match: UPI001C4ACF40 (ras-related protein RABC1-like isoform X1 n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4ACF40)

HSP 1 Score: 231 bits (589), Expect = 4.480e-74
Identity = 119/200 (59.50%), Postives = 150/200 (75.00%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCA--SDSAAATNI----RPSADNTTSS 194
            EFD  FK+LL+GDSGVGKSS+LLRFT D FE + PTIGVDFKVK   +  +R+K+ +WDTAGQERFRTLTS+YYRGA G+I+VYDV++R+TF  L ++W KE+ +YST    +KM+VGNKVD E +R V+++EG+ FAR+   LF+E SAKT   V+Q FEEL+ KILETP LCA  S S   TNI     P  D +TSS
Sbjct:   10 EFDYLFKLLLIGDSGVGKSSLLLRFTSDSFEDLSPTIGVDFKVKIVNIGGKRLKLAVWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWTKEIDLYSTNQDCIKMLVGNKVDKENERVVTKKEGINFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLCAEGSSSVKKTNIFKQKPPQEDASTSS 209          
The following BLAST results are available for this feature:
BLAST of Gcaud9449.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHV3_9FLOR9.260e-12589.05Ras-related protein RABC1 n=1 Tax=Gracilariopsis c... [more]
R7QD81_CHOCR7.030e-12292.04Rab family GTPase n=1 Tax=Chondrus crispus TaxID=2... [more]
A0A1X6P3G8_PORUM1.910e-8671.91Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
D8RPN0_SELML2.320e-7761.88Rab family GTPase n=1 Tax=Selaginella moellendorff... [more]
A0A388JM55_CHABU2.450e-7759.90Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A5B8N2B8_9CHLO5.820e-7764.48Small rab-related GTPase n=1 Tax=Chloropicon primu... [more]
A0A1Y1II07_KLENI1.630e-7659.70Rab family GTPase n=1 Tax=Klebsormidium nitens Tax... [more]
A9RLA5_PHYPA1.110e-7460.54Rab18/RabC-family small GTPase n=3 Tax=Physcomitri... [more]
A0A804HYL4_MUSAM1.520e-7460.30Uncharacterized protein n=4 Tax=Petrosaviidae TaxI... [more]
UPI001C4ACF404.480e-7459.50ras-related protein RABC1-like isoform X1 n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 7..28
score: 51.95
coord: 29..45
score: 28.33
coord: 47..69
score: 47.97
coord: 145..167
score: 39.43
coord: 111..124
score: 38.88
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 12..200
e-value: 1.7E-5
score: 28.8
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 7..170
e-value: 2.3E-95
score: 332.8
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 4..170
e-value: 1.2E-26
score: 104.5
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 3..171
e-value: 1.1E-4
score: 18.5
NoneNo IPR availablePANTHERPTHR47977:SF19RAS-RELATED PROTEIN RABC1-LIKEcoord: 2..192
NoneNo IPR availablePANTHERPTHR47977LD21953P-RELATEDcoord: 2..192
NoneNo IPR availablePROSITEPS51420RHOcoord: 1..167
score: 9.042864
NoneNo IPR availablePROSITEPS51417ARFcoord: 1..167
score: 9.548956
NoneNo IPR availablePROSITEPS51419RABcoord: 2..201
score: 33.140671
NoneNo IPR availableCDDcd01863Rab18coord: 7..167
e-value: 4.67392E-94
score: 269.566
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 9..170
e-value: 8.7E-13
score: 43.8
IPR001806Small GTPasePFAMPF00071Rascoord: 8..168
e-value: 3.6E-55
score: 186.0
IPR001806Small GTPasePROSITEPS51421RAScoord: 2..201
score: 15.664105
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..198
e-value: 1.6E-64
score: 219.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..171
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 5..163
e-value: 2.6E-30
score: 103.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_258_length_33686_cov_5.184015contigNODE_258_length_33686_cov_5.184015:10694..11515 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9449.t1Gcaud9449.t1Gracilaria caudata M_176_S67 malemRNANODE_258_length_33686_cov_5.184015 10694..11515 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9449.t1 ID=Gcaud9449.t1|Name=Gcaud9449.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVD
NRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVW
LKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSA
KTATGVQQTFEELLRKILETPQLCASDSAAATNIRPSADNTTSSYAESCS
C*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom