Gcaud9409.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9409.t1
Unique NameGcaud9409.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Homology
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BLAST of Gcaud9409.t1 vs. uniprot
Match: A0A2V3IN17_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN17_9FLOR)

HSP 1 Score: 156 bits (394), Expect = 2.400e-45
Identity = 87/179 (48.60%), Postives = 110/179 (61.45%), Query Frame = 0 
Query:    1 MPEPQSAHREASQSVFQNVTSPWMQSANVEQLVEEPEEFPLEDYKDQIFELDESVEVKDARKEEAXXXXXXXXXXXXXXXXXXXXXLEDESFKLCRMYFVVGCFGLPLLLFVNVIHFAEEFSSETGSFRIRKYLWLSLIVALLETFLWILWFTVFHIVNDGTFDTLSIYYSNLTVGYLV 179
            M EP     + ++SVF    +PWM+SA V+       +       D I +L   + VKDA KE+                      +E++ FK CRMYF+VGCFGLPLLLFVNVIHF E+F++E+GSFRIR YLWLS+IV LL++FLWILWFT F IV+  TFD LSIY S +  GYLV
Sbjct:    1 MEEPGPPSAQTTRSVFHEGVTPWMRSARVQA----QNDAQRASGGDGIHQLPAPILVKDAYKEDLQHTEHARKLELEQEEARIVDQIEEQRFKHCRMYFIVGCFGLPLLLFVNVIHFCEDFNAESGSFRIRTYLWLSVIVGLLQSFLWILWFTAFRIVDSITFDLLSIYNSTVPFGYLV 175
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BLAST of Gcaud9409.t1 vs. uniprot
Match: R7QFX2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFX2_CHOCR)

HSP 1 Score: 85.1 bits (209), Expect = 5.040e-17
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 0 
Query:   88 EDESFKLCRMYFVVGCFGLPLLLFVNVIHFAEEFSSETGSFRIRKYLWLSLIVALLETFLWILWFTVFHIVNDGTFDTL-SIYYSNLTVGYLV 179
            E+E+   CR++F +GCFGLPLL FV+V ++  +   +  +F+I+KY++LSL+V +++ F+WILW  VF ++ D   D+L SI   N    Y+V
Sbjct:  141 EEENLPRCRLFFYIGCFGLPLLHFVSVYYYLRQLRDQDPNFKIKKYVYLSLLVGIIQVFVWILWIVVFQLLRDD--DSLKSINILNFNEDYIV 231
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BLAST of Gcaud9409.t1 vs. uniprot
Match: A0A2G8K6C6_STIJA (Gamma-secretase subunit PEN-2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K6C6_STIJA)

HSP 1 Score: 59.3 bits (142), Expect = 1.980e-8
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0 
Query:   88 EDESFKLCRMYFVVGCFGLPLLLFVNVIHFAEE-FSSET--GSFRIRKYLWLSLIVALLETFLWILWFTVFHI 157
              E  +LCR YF++GCF LP + F+N + F +E F   T     +IRKYL  SLI A+L T + I W T+F +
Sbjct:    9 NPEKLELCRKYFIIGCFALPFMWFINFVWFFKEGFMRPTYDEQKQIRKYLIWSLIGAILWTIVIITWVTIFQL 81
The following BLAST results are available for this feature:
BLAST of Gcaud9409.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IN17_9FLOR2.400e-4548.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QFX2_CHOCR5.040e-1741.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2G8K6C6_STIJA1.980e-843.84Gamma-secretase subunit PEN-2 n=1 Tax=Stichopus ja... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..96
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 119..132
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 159..179
NoneNo IPR availableTMHMMTMhelixcoord: 133..155
NoneNo IPR availableTMHMMTMhelixcoord: 96..118
IPR019379Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunitPFAMPF10251PEN-2coord: 88..163
e-value: 6.4E-13
score: 48.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_265_length_33019_cov_4.613399contigNODE_265_length_33019_cov_4.613399:4782..5321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9409.t1Gcaud9409.t1Gracilaria caudata M_176_S67 malemRNANODE_265_length_33019_cov_4.613399 4782..5321 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9409.t1 ID=Gcaud9409.t1|Name=Gcaud9409.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MPEPQSAHREASQSVFQNVTSPWMQSANVEQLVEEPEEFPLEDYKDQIFE
LDESVEVKDARKEEARDAERERQIELEKEQDLVLDKLEDESFKLCRMYFV
VGCFGLPLLLFVNVIHFAEEFSSETGSFRIRKYLWLSLIVALLETFLWIL
WFTVFHIVNDGTFDTLSIYYSNLTVGYLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019379Gamma_Secretase_Asp_P_PEN2