Gcaud9401.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9401.t1
Unique NameGcaud9401.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length439
Homology
BLAST of Gcaud9401.t1 vs. uniprot
Match: A0A2V3IUG2_9FLOR (MYND-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG2_9FLOR)

HSP 1 Score: 660 bits (1704), Expect = 3.410e-236
Identity = 317/439 (72.21%), Postives = 370/439 (84.28%), Query Frame = 0
Query:    1 MPTIALSPRHAALVERARKLDAPPSKLAYQIVAAQMRVWTSDQSGVVCRPWYILCVELYPRGSVVNQKLMQPPSSAPSANHMLSFLLEHIVNPPQPQPPACPTQVSFVDDAVTVALAPHLRRLNIQVQTLSLADGLSDYVKRFSDRMIADDRAMRSESAERPGLLSVPHVTPELLRQLMSCAASMYKAQPWQNIPEHVALRVLLPADDATKPRERFFLTVLGSDEKVMGFALMPSLHDLRRKYRRTVLHRTAQIEAEPDL-RIAPDVLVCANCGRRVVEHSDHDGHRYIYRCARCKRLLYCDETCQRRDWSRNHRLECEHAANDAEYVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEKFKWPFVQQHSPPLYPVAFASVQGAAARVTLPTQHEIEIMVDVARTLTECVTTPPKDGVIHFSSGVSLSVAENLADSLP 438
            MP IALS R+++L++RA KL  P +KLAYQIVAAQ+RVWT+D +G  CRPWYI C+ELYPRG+V+NQ +M+P S  PS   MLSFLL HIV+PP+ QP A PTQVSF+D +VT ALAPHLRRLNI+V TL+LADGLSDYVKRFSD+MI+DDRA RS+++ERPGLLSVPHV+  L+ +L + A  MY AQPW+NI EH+ALRVLLPAD + K R+RFFLTVLGSDEK+MGFALMPSLHDLR KYRR VLHRT  +E + +  RIAPDVLVCA+CGRRV E    DG R+++RCA CKRLLYCDETCQRRDW++ HR ECE AA DAEYVFRRDEW WLKREL CLFVDPT+VPFDDLDGFE FKWPFV++ SPPLYP+ FASVQG   RV LPT+ EIE+M+D+ARTLTECV  PPKDGVIH +SGVS+SVAENLADSLP
Sbjct:    1 MPPIALSSRNSSLIKRAHKLPPPNAKLAYQIVAAQLRVWTADHTGRACRPWYIFCLELYPRGTVINQTIMRPASQPPSPTDMLSFLLSHIVDPPKNQPVALPTQVSFIDQSVTEALAPHLRRLNIEVATLTLADGLSDYVKRFSDKMISDDRATRSDTSERPGLLSVPHVSASLISKLTTAACKMYAAQPWRNIAEHLALRVLLPAD-SEKRRQRFFLTVLGSDEKIMGFALMPSLHDLRSKYRRAVLHRTDGLEDDGEQGRIAPDVLVCASCGRRVEEQLAEDGRRFVHRCAACKRLLYCDETCQRRDWAQRHRSECETAAADAEYVFRRDEWGWLKRELVCLFVDPTSVPFDDLDGFELFKWPFVREQSPPLYPLTFASVQGFTTRVALPTKKEIEVMIDIARTLTECVRPPPKDGVIHLASGVSISVAENLADSLP 438          
BLAST of Gcaud9401.t1 vs. uniprot
Match: R7QKP3_CHOCR (MYND-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKP3_CHOCR)

HSP 1 Score: 449 bits (1154), Expect = 2.650e-152
Identity = 217/446 (48.65%), Postives = 304/446 (68.16%), Query Frame = 0
Query:   14 VERARKLDAPPSKLAYQIVAAQMRVWTSDQSGVVCRPWYILCVELYPRGSVVNQKLMQPPSSAPSANHMLSFLLEHIVNPPQPQPPACPTQVSFVDDAVTVALAPHLRRLNIQVQTLSLADGLSDYVKRFSDRMIADDRAMRSESAERPGLLSVPHVTPELLRQLMSCAASMYKAQPWQNIPEHVALRVLLPADD-ATKPRERFFLTVLGSDEKVMGFALMPSLHDLRRKYRRTVLHRTAQIEAEPD-----------------LRIAPDVLVCANCGRRVVEHSDHDGHRYIYRCARCKRLLYCDETCQRRDWSRNHRLECEHAANDAEYVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEKFKWPFVQQHSPPLYPVAFASVQGAAA---RVTLPTQHEIEIMVDVARTLTECVTTPPKDGVIHFSSGVSLSVAENLADSLP 438
            +E A++++ P ++LAYQ++A Q+RVW +DQ+ V CRPWYIL  ELYPRG V+NQ++  P +  P    +L FL +HI+ PP+ +  A PT VSF++DAVT AL P L +L I+  TL +ADG+++Y K FS++MI  ++A R ++AERPG+LSV  +TP +  ++ + A  M++A+PW  I EH+AL + LP  D     R+R+++TVLGS   V GFALMPSL  LR KYRR V ++   +E   D                  R   DVL+C  CG+RV E ++ DG +Y+ RC  C+RLLYC+E CQ+ DW   H+ EC+ A +DAEYVF+RDEWAWL+RELA LF+DPTA+PFDDLD  E +KW ++++ SPPL+P+ F +V+G A+   R+  PT  E   M  +A+ LTECV+ PP DG +H +SGVS+SVAENL +SLP
Sbjct:   14 LEAAQRVEPPSTRLAYQVLAIQLRVWLADQNDVACRPWYILIAELYPRGKVINQRVHSPAAQKPGPAALLHFLADHILCPPEGEA-ARPTHVSFIEDAVTDALKPTLTKLRIEAGTLIVADGIAEYTKLFSNKMINMNKATRGDAAERPGILSVRGLTPSVAGEMCAAAKEMFRARPWSRIAEHIALEIRLPTPDPGHNYRDRYYVTVLGSAGNVQGFALMPSLTKLREKYRRAVRNKGEALEEVSDDEEGDGAFEGARKGHSVSRTMDDVLLCGACGKRVGEATEGDGAKYVDRCGGCRRLLYCNERCQKLDWRERHKDECQQATSDAEYVFKRDEWAWLQRELALLFLDPTAIPFDDLDAAETYKWDYIEEVSPPLHPLPFVTVEGTASGTNRMDRPTVKEFGFMTLIAKALTECVSPPPDDGTLHLASGVSISVAENLKESLP 458          
BLAST of Gcaud9401.t1 vs. uniprot
Match: A0A6T6B3W4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6B3W4_9RHOD)

HSP 1 Score: 227 bits (578), Expect = 3.620e-67
Identity = 132/369 (35.77%), Postives = 203/369 (55.01%), Query Frame = 0
Query:   42 DQSGVVCRPWYILCVELYPRGSVVNQKLMQPPSSAPSANHMLSFLLEHIVNPPQPQPPACPTQVSFVDDAVTVALAPHLRRLNIQVQTLSLADGLSDYVKRFSDRMIADDRAMRSESAERPGLLSVPHVTPELLRQLMSCAASMYKAQPWQNIPEHVALRVLLPADDATKPRERFFLTVLGSDEKVMGFALMPSLHDLRRKYRRTV-LHRTAQIEAEPDLRIAPDVLVCANCGRRVVEHSDHDGHRYIYRCARCKRLLYCDETCQRRDWSRNHRLECEHAAN-DAEYVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEKFKWPFVQQHSPPLYPVAFASVQGAAARVTLPTQHEIEIMVDVARTLTE 408
            D++  V RP+ IL +ELYPRG V+  +  +P  S P    +L+ +L+ I++P    P   P QV+FVD  +T AL P L+ L I+  +LS ADG+S++++ FS R++  + A  S+S+  PGLLSVP VT  L+ ++M+   +M + QPW+ IPE+V L             ER  +TVLGS  +  GFA+  S    + KYR+ + L  T   +  P +R     ++C +CG      ++ +     +RCA C+ + YC+E CQ RDW+  H  EC+     D ++V R     W  REL  LF++ +AVPFDDLD  EK+ WP  +     L P    +  G   R+  PT  E+ ++  +A  ++E
Sbjct:    3 DENSRVVRPYLILVMELYPRGCVIRNRYAKPAGSYPDPQAILNLILDEILDPMADNPQNRPMQVAFVDSNLTDALRPVLKTLEIETTSLSRADGVSEFLQAFSQRIVEKENAAISDSSNHPGLLSVPLVTASLVHRVMTACLNMQERQPWKIIPENVGLFCYYSG-------ERVVVTVLGSAGRSQGFAVTRSPRAAKHKYRKAMGLDLT---DYGPTMR-----MLCGSCG------TEPEAGSNSHRCAGCRSIFYCNENCQSRDWTAMHWNECDKLKRGDLDFVSRA---CWALRELVVLFMEESAVPFDDLDALEKYNWPTGEPPQSHLIPFVNITNLGFEPRIERPTPEELTMIRCIADGISE 347          
BLAST of Gcaud9401.t1 vs. uniprot
Match: A0A1X6NLF1_PORUM (MYND-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLF1_PORUM)

HSP 1 Score: 220 bits (560), Expect = 2.010e-62
Identity = 160/472 (33.90%), Postives = 224/472 (47.46%), Query Frame = 0
Query:   25 SKLAYQIVAAQMRVWTSDQS-GVVCRPWYILCVELYPRGSV-VNQKLMQPPSSAPSANHMLSFLLEHIVNPPQPQPPAC-PTQVSFVDDAVTVALAPHLRRLNIQVQTLSLADGLSDYVKRFSDRMIADDRAMRSESAERPGLLSVPHVTPELLRQLMSCAASMYKAQPWQNIPEHVALRVLLPADDATKPRERFFLTVLGSDEKVMGFALMPSLHDLRRKYRRTVLHRTAQIE--AEPDLRIAPDVLVCANCGRRVVEHS-----------------------DHDGHRYIYRCARCKRLLYCDETCQRRDWSRNHRLECEHAANDAEYVFR---RDEWAWLKRELACLFVDPTAVPFDDLDGF-EKFKWPFVQQHSPP-------LYPVAFASVQGA-------------AARVTL------PTQHEIEIMVDVARTLTECVTTPPKDGVIHFSSGVSLSVAENLADSLP 438
            SK  +QIV+  +RVW +D + G V RP+Y+L +ELYP GSV    ++ + P+  P    +L F L  +  P     P   P  V+F+D+A T    P L    ++ QTL+LA+G+S+YV   S++M+  D A   + +  PGLL  P VT ++LR + + AA+M  A+PW+ +PE +ALRV             +F++V GSD    GF   PSL  L+ K+ R     T  +    E       +V++CA CGRR+ E                         D      + RC+RC  + YC   CQ RDW+  H  EC     DAE   R   R E  W++RELA +  DPTAVPFDDLD   E            P       LYPV F +V GA             AA +T       P   E+E++  VAR L E VT PP  GV   + G+      +++   P
Sbjct:   65 SKRVWQIVSLPLRVWATDPATGAVIRPFYMLALELYPSGSVSACGRVRERPAEHPPPLELLRFALASMAEPAGDNGPRVRPDVVTFLDEATTALATPPLAAAGMEAQTLTLAEGVSEYVASLSNKMVEKDTAAVGDVSGHPGLLRSPGVTVDVLRSMHASAAAMAAARPWRYLPERLALRV------TALDGRVYFVSVFGSDGDATGFVAAPSLVALQAKFTRATGMGTPVLADGVEVPSVYGGEVVLCAACGRRLAEKGRPRPRPPCAGATGRSADGAAAGDDGVSGTPVNRCSRCHAVYYCGRPCQVRDWAARHHAEC----TDAEAGPRLAARPEGVWVRRELALILCDPTAVPFDDLDAIAEHGLGGMAGDPDKPKPDAGGVLYPVPFVTVAGAGXXXXXXXAAGSDAAGLTAKPGVERPGLQELELLDAVARALAE-VTEPPARGVEVAAHGLRFCTERDMSAPPP 525          
BLAST of Gcaud9401.t1 vs. uniprot
Match: A0A7S0BIP4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIP4_9RHOD)

HSP 1 Score: 168 bits (425), Expect = 3.180e-45
Identity = 104/320 (32.50%), Postives = 164/320 (51.25%), Query Frame = 0
Query:  102 PTQVSFVDDAVTVALAPHLRRLNIQVQTLSLADGLSDYVKRFSDRMIADDRAMRSESAERPGLLSVPHVTPELLRQLMSCAASMYKAQPWQNIPEHVALRVLLPADDATKPRERFFLTVLGSDEKVMGFALMPSLHDLRRKYRRTVLHRTAQIEAEPDLRIAPDVLVCANCGRRVVEHSDHDGHRYIYRCARCKRLLYCDETCQRRDWSRNHRLECEHAANDAEYVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEKFKWPFVQQHSPPLYPVAFASVQGAAA---RVTLPTQHEIEIMVDVARTLTECVTTPPKDGV 418
            P Q+SF+D+ +       L  + I+V  L+ A G+ DY+ +FS+++I   RA R ++AERPG+   P +    L +  S     Y ++PW+ I E  A+       +  K  ER ++TVLGS ++  G A+M S+  LRRKY R     +   + E D+      ++CANCG+        +     +RC  C+ L YCD+ CQR +W + H+ EC+   +  E+V R     W KRE   +F+DP+AVPFDDL+  E  ++   Q      +P+ F S+QG+     RV  P   E+E +  +   L +      K+ V
Sbjct:    3 PVQISFIDEKLLEYCRKPLVSIGIEVVKLTEATGVEDYITKFSNKLIERGRASRGDAAERPGVHKGPGIQRHALEKYFSACKDFYSSKPWRRIDEVCAIEA-----EWLKGGERRYVTVLGSSDRTYGVAVMGSIQALRRKYIRA----SGTYDIEKDIEAN---MLCANCGK--------EPETETFRCVGCRTLFYCDQECQRTNW-KQHQYECK-VPSKLEHVTRE---VWNKREQTMVFLDPSAVPFDDLEYAEVNEFWDAQSSK---FPLVFVSIQGSPMLPPRVVRPNPQELEWITKLISALLQTEKIGTKEAV 294          
BLAST of Gcaud9401.t1 vs. uniprot
Match: A0A7J7IEA1_9RHOD (MYND-type domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IEA1_9RHOD)

HSP 1 Score: 81.3 bits (199), Expect = 2.130e-13
Identity = 68/231 (29.44%), Postives = 97/231 (41.99%), Query Frame = 0
Query:  217 FLTVLGSDEKVMGFALMPSLHDLRRKYRRTVLHR--------TAQIEAEPDLRIAP-----------------DVLVCANCGRRVVEHSDHDGHRYIYRCARCKRLLYCDETCQRRDWSRNHRLECEHAAN-----------DAEYVFRRDEWAWLKRELACLFVDPTAVPFDDLDGFEKFKWPFVQQHSPPLYPVAFASVQGAAAR---VTLPTQHEIEIMVDVARTLTE 408
            FL VLG +    G   +PS+   R++Y  ++  R        TA    E D   AP                 DV++CA+ GR +          Y YRC+RCKR  Y D   Q+ DW R H  ECE  AN           DA  +       W   EL  L+++ +A+ FDDLD  E+  WP   + S   +PV F ++ G +     V  P   E+  M+ +   + E
Sbjct:    5 FLVVLGGNAP--GLVGLPSVRAARKRYAASIRQRIQANTKTGTAAQHNESDEPTAPLYTPSEVVASLSEDDIPDVVLCAHTGRVI-------PGPYAYRCSRCKRAYYVDNEAQKADWQR-HAPECEAIANAKTSASESSILDAHDLSLITRNFWRYAELVHLYMEESALCFDDLDAIEENGWPIAARGS-NAWPVPFVTIGGGSLPRPLVERPNLEELSWMIALMEWILE 224          
The following BLAST results are available for this feature:
BLAST of Gcaud9401.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IUG2_9FLOR3.410e-23672.21MYND-type domain-containing protein n=1 Tax=Gracil... [more]
R7QKP3_CHOCR2.650e-15248.65MYND-type domain-containing protein n=1 Tax=Chondr... [more]
A0A6T6B3W4_9RHOD3.620e-6735.77Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NLF1_PORUM2.010e-6233.90MYND-type domain-containing protein n=1 Tax=Porphy... [more]
A0A7S0BIP4_9RHOD3.180e-4532.50Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7J7IEA1_9RHOD2.130e-1329.44MYND-type domain-containing protein n=1 Tax=Cyanid... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.2220coord: 261..323
e-value: 1.7E-10
score: 42.4
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 266..321
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 269..317
e-value: 4.2E-9
score: 36.3
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 269..317
score: 12.086625

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_776_length_18230_cov_3.942224contigNODE_776_length_18230_cov_3.942224:15114..16430 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9401.t1Gcaud9401.t1Gracilaria caudata M_176_S67 malemRNANODE_776_length_18230_cov_3.942224 15114..16430 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9401.t1 ID=Gcaud9401.t1|Name=Gcaud9401.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MPTIALSPRHAALVERARKLDAPPSKLAYQIVAAQMRVWTSDQSGVVCRP
WYILCVELYPRGSVVNQKLMQPPSSAPSANHMLSFLLEHIVNPPQPQPPA
CPTQVSFVDDAVTVALAPHLRRLNIQVQTLSLADGLSDYVKRFSDRMIAD
DRAMRSESAERPGLLSVPHVTPELLRQLMSCAASMYKAQPWQNIPEHVAL
RVLLPADDATKPRERFFLTVLGSDEKVMGFALMPSLHDLRRKYRRTVLHR
TAQIEAEPDLRIAPDVLVCANCGRRVVEHSDHDGHRYIYRCARCKRLLYC
DETCQRRDWSRNHRLECEHAANDAEYVFRRDEWAWLKRELACLFVDPTAV
PFDDLDGFEKFKWPFVQQHSPPLYPVAFASVQGAAARVTLPTQHEIEIMV
DVARTLTECVTTPPKDGVIHFSSGVSLSVAENLADSLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND