Gcaud9396.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9396.t2
Unique NameGcaud9396.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length486
Homology
BLAST of Gcaud9396.t2 vs. uniprot
Match: A0A2V3IX35_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX35_9FLOR)

HSP 1 Score: 459 bits (1182), Expect = 1.620e-146
Identity = 244/468 (52.14%), Postives = 323/468 (69.02%), Query Frame = 0
Query:    1 LSSIKPTGSPERVLTTHKRERS-VIVLWNTQTGSQEKVYDAVESKPNCVDIYSKGQYFASGHDNGFIHLWNWKDDRPILTFKNEGSERGAQNGVSLSDANDEKDSDLSTQMSSRTISISFFERENDLSLASVS---SDRAG---GVEYIRIWVLPPKKFLDGSSQAFVSCKRAAVWTCRLVRQVFCSVDGHLFTGGDDGVARMWEREEYDTWKEYTIEKDINEDS--KMSSTFICCGKQTRLIATYVTKSPYVVVWDTKNKELRRKIMTRTGVYKPYIPLEPHSVDVADMNQYQMLKPDKGTGEFWSKFGEGGSSGQSGSKYQKGSRKLWENPGYFFRQHTQDSNSVIRPGELQPWLQLKLERGDMQGLDVCFDQPVTSGVTGLFVNAPNSGG--DIGGGAS--EDGKASGTKVLQRRGMAIKLEDKRTELFEVEGGATVGRASGGVDANVAKTMADKGGSKAAASST 455
            LSSIKPT  P+ VLTTHK E+  +I LW+TQTGS+E++Y +V SKPNC+D+ SK ++FASGHDNGFIHLWNWKDD+PILTF++EG+ +G+Q  VSLS+AN ++D D   Q+++ TISISFFER+NDL LASVS   +DR+      E IRIW+LPP++ L    Q+FVSCKR AVW    VR+V+ S DG+LFTGGDDGVARMWE+E+ DTWK+YT+EKD+  +    M+S FI CGKQT+ +ATYVTKSPYVVVWDT +KEL RKIM RTG Y+PY PL  HSVDV+DM + Q +K  K   +F + +G+ G+     S+++KGSR LW+NP  +F   + D   V R GELQPWL + +     + L VCFDQPV    +G FV      G  DI  G    +D   +  K  +RRG+ +KLE+   E FE++G A    + G  +  V K    +G +K+ +++T
Sbjct:  760 LSSIKPTTKPQLVLTTHKLEKEPLIALWDTQTGSRERMYSSVSSKPNCIDVSSKMEFFASGHDNGFIHLWNWKDDKPILTFRDEGTGKGSQQVVSLSEANSQRDPDGKGQVNTGTISISFFERDNDLLLASVSWNPADRSKIRKTPELIRIWLLPPRRILADDVQSFVSCKRTAVWQSPRVREVYWSTDGNLFTGGDDGVARMWEQEDDDTWKQYTMEKDVKSERPLNMASAFISCGKQTKFVATYVTKSPYVVVWDTTDKELCRKIMKRTGFYRPYFPLLWHSVDVSDMQELQSVKSSKNVNDF-ADYGKVGTDAVVESRHEKGSRTLWQNPKLYFS--SPDEKGVKRLGELQPWLTMAVGAAGKEDLRVCFDQPVRHCYSGTFVIDKGGAGLQDITSGVDPEDDKNEAKGKQAERRGIVVKLENGCVEFFELQGNANARLSPGSGEPEVDKITPGEGNTKSNSTTT 1224          
BLAST of Gcaud9396.t2 vs. uniprot
Match: R7QKS7_CHOCR (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKS7_CHOCR)

HSP 1 Score: 232 bits (591), Expect = 1.840e-63
Identity = 160/450 (35.56%), Postives = 236/450 (52.44%), Query Frame = 0
Query:    1 LSSIKPTGSPERVLTTHKR------ERSVIVLWNTQTGSQEKVYDAVESKPNCVDIYSKGQYFASGHDNGFIHLW--NWKDDRPILTFKNEGS--ERGAQNGVSLSDANDEKDSDLSTQMSSRTISISFFERENDLSLASVSSDRAGGVEYIRIWVLPPKKFLDGSSQAFVSCKRAAVWTCRLVRQVFCSVDGHLFTGGDDGVARMW-EREEYDTWKEYTIEKDINED-SKMSSTFICCGKQTRLIATYVTKSPYVVVWDTKNKE--LRRKIMTRTGVYKPYIPLEPHSVDVADMNQYQMLKPDKGTGEFWSKFGEGGSSGQSGSKYQKGSRKLWENPGYFFRQHTQD-SNSVIRPGELQPWLQLKLERGDMQGLDVCFDQPVTSGVTGLFVNAPNS-GGDIG------GGASEDGKASGTKVLQ----RRGMAIKLEDKRTELFEVEGG 424
            ++S+ PT     +LTT +           I LWNT TG + + +D V S+  C D+   G+YFASGH+NG+IHLW  +  +  P+L+FKNEG+  E G Q+ V+L   N  +     +  + +TIS+SF+ +E    LA+VS++     E IR+W LPP   +    ++FV+  R AV  C  VRQV  S  G  F+ GDDG+ARMW +REE   W ++ + +   E  S +SS  +  G+ T+L+ATYVTKSPYV VWD    +     ++  R  +Y+ Y+ + P S D  D+     L+         S  G GG  G + ++ ++   K         R H  D  N+    GE+ P L++K E    +GL+VCF+QPV  GV+G F       GG IG        A   G+ +G +  +    RRGM   L+D    +FE+EGG
Sbjct:  516 VTSMMPTVRTRELLTTSRSGGDESMHTGTIALWNTDTGERVRTFDCVTSQATCTDVSLDGEYFASGHNNGYIHLWTLHGSETEPVLSFKNEGAVAENGQQH-VALDKVNRTR-----SNGTLKTISLSFYGKEEQRWLAAVSAN-----EIIRVWELPPGSIIRKGKESFVTTIRRAVLRCPRVRQVQWSKCGWFFSAGDDGIARMWMQREEGGRWVDHALGRKKRERASDISSVLVSSGRGTKLVATYVTKSPYVTVWDLSGFDGGNASQVARRQRLYRSYMCMVPDSEDARDIEHLTALRKTSTGVSGKSGVGNGGLEGMADAEIRRELEK---------RFHKLDIKNATKLVGEMHPRLKMKPEEW-RRGLEVCFEQPVIVGVSGTFRRGEREDGGKIGVDPAAVHAAGIPGELAGERGGEYEEGRRGMVAALQDGAIAMFELEGG 944          
The following BLAST results are available for this feature:
BLAST of Gcaud9396.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX35_9FLOR1.620e-14652.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QKS7_CHOCR1.840e-6335.56WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 164..198
e-value: 3.5
score: 13.5
coord: 31..70
e-value: 0.0042
score: 26.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..266
e-value: 5.8E-19
score: 69.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..472
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 22..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_776_length_18230_cov_3.942224contigNODE_776_length_18230_cov_3.942224:1387..2844 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9396.t2Gcaud9396.t2Gracilaria caudata M_176_S67 malemRNANODE_776_length_18230_cov_3.942224 1387..2844 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9396.t2 ID=Gcaud9396.t2|Name=Gcaud9396.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=486bp
LSSIKPTGSPERVLTTHKRERSVIVLWNTQTGSQEKVYDAVESKPNCVDI
YSKGQYFASGHDNGFIHLWNWKDDRPILTFKNEGSERGAQNGVSLSDAND
EKDSDLSTQMSSRTISISFFERENDLSLASVSSDRAGGVEYIRIWVLPPK
KFLDGSSQAFVSCKRAAVWTCRLVRQVFCSVDGHLFTGGDDGVARMWERE
EYDTWKEYTIEKDINEDSKMSSTFICCGKQTRLIATYVTKSPYVVVWDTK
NKELRRKIMTRTGVYKPYIPLEPHSVDVADMNQYQMLKPDKGTGEFWSKF
GEGGSSGQSGSKYQKGSRKLWENPGYFFRQHTQDSNSVIRPGELQPWLQL
KLERGDMQGLDVCFDQPVTSGVTGLFVNAPNSGGDIGGGASEDGKASGTK
VLQRRGMAIKLEDKRTELFEVEGGATVGRASGGVDANVAKTMADKGGSKA
AASSTQVVANEKEGSGKAKEAANATATANDVASVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf