Gcaud9392.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9392.t1
Unique Name	Gcaud9392.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	239

Homology

[Close]

BLAST of Gcaud9392.t1 vs. uniprot
Match: A0A2V3IX42_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX42_9FLOR)

HSP 1 Score: 137 bits (345), Expect = 2.040e-36
Identity = 114/257 (44.36%), Postives = 143/257 (55.64%), Query Frame = 0

Query:    1 MPLRAVFPALTALVLLSLSHSGTAVPTIRSPLSRGIFDFFTSSSEQTSLPPTST------------------DTTVADLTDSPLDSAPEDEAALFEQPSPSLSPSPSSTPLSSLSSITLPSATPQETVFATETPLPDEDTEAQIAEQTPEATTSPSPIFVIEGATNP-EQLFAPETDPMSDDKAVDNRSSGATQIASTASTGISVVALVAVAVAVLAPALLIYYGIRRRRAAGFNAMPPTQTDTSTYRPASQFSVGE 238
            M  RA+  ALTAL+LLSLS SG +VPT+    SRG+FD F+SS+ + +  PT++                   T VADL+D PLD+ PEDEA                 P SS+                               +      T  SPI   + + +P +QL  P+    SD KA D RSSGA+Q+ STAS+GISV+ALVAVAVA+LAPAL IY+GIRRRRAAGFNAMPPT +D STY+P SQFSVG+
Sbjct:    1 MHFRALTIALTALLLLSLSQSGHSVPTVPLTASRGLFDIFSSSTAEPT--PTASVXXXXXXXXXXXXXXXXXXTAVADLSDQPLDTDPEDEA-----------------PESSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ------TPVSPIIPYDDSQDPFDQLLIPDGSD-SDAKAADPRSSGASQVLSTASSGISVLALVAVAVAILAPALFIYWGIRRRRAAGFNAMPPTTSDNSTYQPTSQFSVGQ 231

The following BLAST results are available for this feature:

BLAST of Gcaud9392.t1 vs. uniprot

BLAST of Gcaud9392.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IX42_9FLOR	2.040e-36	44.36	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 184..207
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..24
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..183
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 208..238
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..16
None	No IPR available	TMHMM	TMhelix		coord: 184..206

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_559_length_22118_cov_3.843737	contig	NODE_559_length_22118_cov_3.843737:15526..16242 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9392.t1	Gcaud9392.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_559_length_22118_cov_3.843737 15526..16242 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9392.t1 ID=Gcaud9392.t1|Name=Gcaud9392.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=239bp
MPLRAVFPALTALVLLSLSHSGTAVPTIRSPLSRGIFDFFTSSSEQTSLP
PTSTDTTVADLTDSPLDSAPEDEAALFEQPSPSLSPSPSSTPLSSLSSIT
LPSATPQETVFATETPLPDEDTEAQIAEQTPEATTSPSPIFVIEGATNPE
QLFAPETDPMSDDKAVDNRSSGATQIASTASTGISVVALVAVAVAVLAPA
LLIYYGIRRRRAAGFNAMPPTQTDTSTYRPASQFSVGE*